EY664811

Overview
NameEY664811
Unique NameEY664811
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length592
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig8340 contig Csv1_Contig8340:480..1071. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY664811 vs. ExPASy Swiss-Prot
Match: GI1L3_ARATH (Probable gibberellin receptor GID1L3 OS=Arabidopsis thaliana GN=GID1L3 PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.073e-11
Identity = 48/132 (36.36%), Postives = 69/132 (52.27%), Query Frame = 3
Query:   18 FLTGDSAGGNLSYQVGLRASAIVDDLLPLTIKGLILIKPYFSGVKRTESELRLEKDPDFPLAINDMCWELALPLGADRDHEYCNPTVGGGSKLIEKMSSLGWRVMEYVGFADPMSDRQIEFLKLLDQKGVAV 413
            FL GDS+GGN+ + V +RA     D+L     G IL+ P F G +RTESE RL+      +   D  W   LP G DR+H  C+P  G  SK +E +S    + +  V   D + D Q+++ + L + G  V
Sbjct:  184 FLAGDSSGGNIVHNVAVRAVESRIDVL-----GNILLNPMFGGTERTESEKRLDGKYFVTVRDRDWYWRAFLPEGEDREHPACSP-FGPRSKSLEGLSFP--KSLVVVAGLDLIQDWQLKYAEGLKKAGQEV 307          
BLAST of EY664811 vs. ExPASy Swiss-Prot
Match: GID1_ORYSJ (Gibberellin receptor GID1 OS=Oryza sativa subsp. japonica GN=GID1 PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 6.033e-11
Identity = 47/130 (36.15%), Postives = 68/130 (52.31%), Query Frame = 3
Query:   18 FLTGDSAGGNLSYQVGLRASAIVDDLLPLTIKGLILIKPYFSGVKRTESELRLEKDPDFPLAINDMCWELALPLGADRDHEYCNPTVGGGSKLIEKMSSLGW-RVMEYVGFADPMSDRQIEFLKLLDQKG 404
            FL+GDS+GGN+++ V +RA+   D+   + + G IL+   F G +RTESE RL+      L   D  W+  LP  ADRDH  CNP    G +L      L + + +  V   D   DRQ+ +   L + G
Sbjct:  193 FLSGDSSGGNIAHHVAVRAA---DE--GVKVCGNILLNAMFGGTERTESERRLDGKYFVTLQDRDWYWKAYLPEDADRDHPACNPFGPNGRRL----GGLPFAKSLIIVSGLDLTCDRQLAYADALREDG 313          
BLAST of EY664811 vs. ExPASy Swiss-Prot
Match: GI1L1_ARATH (Probable gibberellin receptor GID1L1 OS=Arabidopsis thaliana GN=GID1L1 PE=1 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 7.879e-11
Identity = 39/93 (41.94%), Postives = 50/93 (53.76%), Query Frame = 3
Query:   18 FLTGDSAGGNLSYQVGLRASAIVDDLLPLTIKGLILIKPYFSGVKRTESELRLEKDPDFPLAINDMCWELALPLGADRDHEYCNPTVGGGSKL 296
            FL GDS+GGN+++ V LRA     D+L     G IL+ P F G +RTESE  L+      +   D  W+  LP G DR+H  CNP    G  L
Sbjct:  186 FLAGDSSGGNIAHNVALRAGESGIDVL-----GNILLNPMFGGNERTESEKSLDGKYFVTVRDRDWYWKAFLPEGEDREHPACNPFSPRGKSL 273          
The following BLAST results are available for this feature:
BLAST of EY664811 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
GI1L3_ARATH2.073e-1136.36Probable gibberellin receptor GID1L3 OS=Arabidopsi... [more]
GID1_ORYSJ6.033e-1136.15Gibberellin receptor GID1 OS=Oryza sativa subsp. j... [more]
GI1L1_ARATH7.879e-1141.94Probable gibberellin receptor GID1L1 OS=Arabidopsi... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C1-101-070-G03-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY664811 ID=EY664811; Name=EY664811; organism=Citrus sinensis; type=EST; length=592bp
CTGACTTTTTTTCCTGTTTCTTAACGGGAGATAGCGCTGGTGGTAACCTA
TCTTACCAGGTAGGATTACGTGCATCTGCTATAGTTGATGATTTGTTGCC
GCTGACAATCAAGGGCCTGATTTTGATCAAACCATACTTCAGTGGGGTCA
AGAGGACGGAATCAGAGTTGAGATTGGAGAAAGATCCTGATTTTCCGTTG
GCTATTAATGATATGTGTTGGGAGTTGGCACTGCCACTGGGTGCAGACCG
TGATCATGAGTATTGCAATCCGACGGTGGGAGGTGGATCAAAGCTGATTG
AGAAAATGAGCTCGCTCGGATGGAGGGTGATGGAGTACGTTGGCTTTGCT
GACCCAATGAGTGACCGTCAGATTGAGTTTCTAAAGCTTTTGGACCAAAA
GGGGGTGGCTGTGGTGGGCCATGTTGATGGTAGTGGCCACCGCACTAGAG
ACTTTGTCGGTCCTGCTCTGTGCGGTTATTTTAAAGACTTTGTTTTGTCC
TCCACGAAGACTGCTTAATTAGTGAGTGGGGTGGTGGGTCAGTGTAATTA
GGTATTTGATGTTTAATTAAAAANNAAAAAANNNNAAAAAAA
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