EY664810

Overview
NameEY664810
Unique NameEY664810
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length684
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7710 contig Csv1_Contig7710:685..1368. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY664810 vs. ExPASy Swiss-Prot
Match: THF1_ORYSJ (Protein THYLAKOID FORMATION1, chloroplastic OS=Oryza sativa subsp. japonica GN=THF1 PE=2 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 1.114e-28
Identity = 65/105 (61.90%), Postives = 74/105 (70.48%), Query Frame = 3
Query:   60 QVEGILNDIAERASGKGNFSYSRFFAVGLFRLLELANATEPTFL*KLCAVLNVNKRSVDRDLDVYRNXXXXXXXXXXXXXEYVDXXXXXXXXXTEPQKANEAIKK 374
            ++E IL DI+ERA GKG+FSYSRFFAVGLFRLLELANATEPT L KLCA LN+NKRSVDRDLDVYRN             EYV+         +E  K+NEA+ K
Sbjct:  173 EIEAILKDISERAQGKGSFSYSRFFAVGLFRLLELANATEPTILDKLCAALNINKRSVDRDLDVYRNILSKLVQAKELLKEYVEREKKKREERSETPKSNEAVTK 277          
BLAST of EY664810 vs. ExPASy Swiss-Prot
Match: THF1_ARATH (Protein THYLAKOID FORMATION 1, chloroplastic OS=Arabidopsis thaliana GN=THF1 PE=1 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 1.901e-28
Identity = 65/112 (58.04%), Postives = 75/112 (66.96%), Query Frame = 3
Query:   63 VEGILNDIAERASGKGNFSYSRFFAVGLFRLLELANATEPTFL*KLCAVLNVNKRSVDRDLDVYRNXXXXXXXXXXXXXEYVDXXXXXXXXXTEPQKANEAIKKCLGEYLYS 398
            +E +L DIA RA  K  FSYSRFFAVGLFRLLELA+AT+PT L KLCA LN+NK+SVDRDLDVYRN             EYV+          + QKANE I KCLG+ LY+
Sbjct:  180 IEAVLKDIAGRAGSKEGFSYSRFFAVGLFRLLELASATDPTVLDKLCASLNINKKSVDRDLDVYRNLLSKLVQAKELLKEYVEREKKKQGERAQSQKANETISKCLGDTLYN 291          
BLAST of EY664810 vs. ExPASy Swiss-Prot
Match: THF1_SOLTU (Protein THYLAKOID FORMATION1, chloroplastic OS=Solanum tuberosum GN=THF1 PE=2 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 4.682e-27
Identity = 64/113 (56.64%), Postives = 73/113 (64.60%), Query Frame = 3
Query:   60 QVEGILNDIAERASGKGNFSYSRFFAVGLFRLLELANATEPTFL*KLCAVLNVNKRSVDRDLDVYRNXXXXXXXXXXXXXEYVDXXXXXXXXXTEPQKANEAIKKCLGEYLYS 398
            ++E I  DIA+RA  K  F YSR FAVGLFRLLELAN T+PT L KLCA LNVNK+SVDRDLDVYRN             EYV+          E QKANE + KCLG+Y Y+
Sbjct:  180 EIENIFKDIAQRAGTKDGFCYSRLFAVGLFRLLELANVTDPTILEKLCAALNVNKKSVDRDLDVYRNLLSKLVQAKELLKEYVE-REKKKRGERETQKANETVTKCLGDYQYA 291          
The following BLAST results are available for this feature:
BLAST of EY664810 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
THF1_ORYSJ1.114e-2861.90Protein THYLAKOID FORMATION1, chloroplastic OS=Ory... [more]
THF1_ARATH1.901e-2858.04Protein THYLAKOID FORMATION 1, chloroplastic OS=Ar... [more]
THF1_SOLTU4.682e-2756.64Protein THYLAKOID FORMATION1, chloroplastic OS=Sol... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C1-101-070-G02-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY664810 ID=EY664810; Name=EY664810; organism=Citrus sinensis; type=EST; length=684bp
TCCATGCAGACCCACTCGTCCGGCCAGTTCCCTANTTGAGTTCCCATCTA
AATAAGGACCAAGTTGAGGGGATATTGAACGACATTGCAGAAAGAGCCAG
CGGCAAGGGGAATTTCAGCTACAGCCGTTTCTTTGCTGTTGGGCTGTTTC
GCCTTCTTGAACTGGCAAATGCAACTGAACCCACATTTTTATAAAAGCTT
TGTGCAGTCTTAAATGTTAACAAAAGAAGTGTGGATCGTGACCTTGATGT
ATATCGCAATTTATTATCCAAGCTGCTTCAAGCTAAAGAGTTGCTGAAGG
AGTATGTGGATAGGGAAAAGAAGAAGAGAGAAGAAAGGACAGAACCGCAA
AAGGCTAATGAAGCCATTAAAAAATGTCTGGGAGAATACCTATATTCCCA
TCAGTAATTCAACCTGTGAAGGAAGCCGGCAATGCTAATCATCTCTTGTG
AAGTTTCCATCCCGTTTTTGTCTGCTTTGCGGTNGAGGTGGAGCCTCAAT
GCTCCATGTACCATGTTTTAAGCTTACAGGCTTGCATGTTTCAGGGGTCT
GTTTTTAATACCGGGATTTGCATACATCCAGTCTTCACCATGCTAATACA
CAAANTTCTTCTGTTTTTGCCAAATGGATNTTTCTATTCATAATTCTACC
CGCACATTCATACAAAATAAAAAAAAAAAAAAAA
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