EH117794

Overview
NameEH117794
Unique NameEH117794
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length298
Libraries
Library NameType
Different expression profile of FJWC and FJ72-1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7543 contig Csv1_Contig7543:522..819. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EH117794 vs. ExPASy Swiss-Prot
Match: PGLR5_ARATH (Probable polygalacturonase At1g80170 OS=Arabidopsis thaliana GN=At1g80170 PE=2 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 2.665e-32
Identity = 63/90 (70.00%), Postives = 76/90 (84.44%), Query Frame = -2
Query:   13 NITNPCRHAPTAITFHKCKNLKVQSLRVVNSQQMHIAFTNCLRVVISNLEVIAPAESPNTDGIHISASRGVEVKNSIVGTGDDCISIVVN 282
            N +NPCR APTA+TFHKCKN++V++L V++SQQMHIA T+C RV IS L+VIAPA SPNTDGIHIS SRG+ + N+ V TGDDCISIV N
Sbjct:  168 NHSNPCRGAPTALTFHKCKNMRVENLNVIDSQQMHIALTSCRRVTISGLKVIAPATSPNTDGIHISVSRGIVIDNTTVSTGDDCISIVKN 257          
BLAST of EH117794 vs. ExPASy Swiss-Prot
Match: PGLR_SOLLC (Polygalacturonase-2 OS=Solanum lycopersicum GN=PG2 PE=1 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 1.199e-24
Identity = 50/88 (56.82%), Postives = 69/88 (78.41%), Query Frame = -2
Query:   19 NITNPCRHAPTAITFHKCKNLKVQSLRVVNSQQMHIAFTNCLRVVISNLEVIAPAESPNTDGIHISASRGVEVKNSIVGTGDDCISIV 282
            N + PCR APTA+TF  CKNLKV +L+  N+QQ+HI F +C  VV SNL + A A+SPNTDG+H+S ++ +++ ++I+GTGDDCISIV
Sbjct:  189 NKSLPCRDAPTALTFWNCKNLKVNNLKSKNAQQIHIKFESCTNVVASNLMINASAKSPNTDGVHVSNTQYIQISDTIIGTGDDCISIV 276          
BLAST of EH117794 vs. ExPASy Swiss-Prot
Match: PGLR_PERAE (Polygalacturonase OS=Persea americana PE=2 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 1.015e-23
Identity = 48/83 (57.83%), Postives = 62/83 (74.70%), Query Frame = -2
Query:   22 PCRHAPTAITFHKCKNLKVQSLRVVNSQQMHIAFTNCLRVVISNLEVIAPAESPNTDGIHISASRGVEVKNSIVGTGDDCISI 270
            PC+ APTA+TF  CKNL V  L + +SQ+MH++F  C  V+ SNL V AP  SPNTDGIHI+ ++ + V NS++GTGDDCISI
Sbjct:  201 PCKSAPTALTFRSCKNLIVSDLSIKDSQKMHLSFDKCQDVIASNLMVTAPEHSPNTDGIHITGTQRIHVMNSVIGTGDDCISI 283          
BLAST of EH117794 vs. ExPASy Swiss-Prot
Match: PGLR_ACTDE (Polygalacturonase OS=Actinidia deliciosa PE=2 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 1.326e-23
Identity = 45/89 (50.56%), Postives = 69/89 (77.53%), Query Frame = -2
Query:   19 SNITNPCRHAPTAITFHKCKNLKVQSLRVVNSQQMHIAFTNCLRVVISNLEVIAPAESPNTDGIHISASRGVEVKNSIVGTGDDCISIV 285
            +N   PC+ APTA+TF+K K++ V++L++ N+QQ+H++F NC+ V  SNL V AP  SPNTDGIH++ ++ + + + ++GTGDDCISIV
Sbjct:  201 TNKALPCKDAPTALTFYKSKHVIVKNLKIENAQQIHVSFDNCVNVQASNLMVTAPENSPNTDGIHVTGTQNIHISSCVIGTGDDCISIV 289          
BLAST of EH117794 vs. ExPASy Swiss-Prot
Match: QRT2_ARATH (Polygalacturonase QRT2 OS=Arabidopsis thaliana GN=QRT2 PE=1 SV=2)

HSP 1 Score: 105.916 bits (263), Expect = 6.579e-23
Identity = 47/84 (55.95%), Postives = 65/84 (77.38%), Query Frame = -2
Query:   19 PCRHAPTAITFHKCKNLKVQSLRVVNSQQMHIAFTNCLRVVISNLEVIAPAESPNTDGIHISASRGVEVKNSIVGTGDDCISIV 270
            PC  APTA+TF +C NL+V ++R+ N+QQMH+ F +C  V   NL V +PA+SPNTDGIH+S ++ + +++SIV TGDDCISIV
Sbjct:  188 PCLGAPTAVTFVECNNLRVSNIRLENAQQMHLTFQDCKNVKALNLMVTSPADSPNTDGIHVSGTQNILIQDSIVRTGDDCISIV 271          
BLAST of EH117794 vs. ExPASy Swiss-Prot
Match: ADPG1_ARATH (Polygalacturonase ADPG1 OS=Arabidopsis thaliana GN=ADPG1 PE=2 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 1.914e-22
Identity = 46/85 (54.12%), Postives = 64/85 (75.29%), Query Frame = -2
Query:   22 TNPCRHAPTAITFHKCKNLKVQSLRVVNSQQMHIAFTNCLRVVISNLEVIAPAESPNTDGIHISASRGVEVKNSIVGTGDDCISI 276
            + PC  APTA+T +  KNL V++LRV N+QQ+ I+   C +V +SN+E+ AP +SPNTDGIHI+ ++ + V NS +GTGDDCISI
Sbjct:  185 SKPCTKAPTALTLYNLKNLNVKNLRVKNAQQIQISIEKCNKVEVSNVEITAPGDSPNTDGIHITNTQNIRVSNSDIGTGDDCISI 269          
BLAST of EH117794 vs. ExPASy Swiss-Prot
Match: PGLR_MALDO (Polygalacturonase OS=Malus domestica PE=2 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 5.569e-22
Identity = 44/85 (51.76%), Postives = 66/85 (77.65%), Query Frame = -2
Query:   19 PC-RHAPTAITFHKCKNLKVQSLRVVNSQQMHIAFTNCLRVVISNLEVIAPAESPNTDGIHISASRGVEVKNSIVGTGDDCISIV 270
            PC  +APTA+TF++C NL V++L + ++QQ+H+ F NC+ V  S L V AP +SPNTDGIH++ ++ + + +S++GTGDDCISIV
Sbjct:  214 PCGTYAPTAVTFNRCNNLVVKNLNIQDAQQIHVIFQNCINVQASCLTVTAPEDSPNTDGIHVTNTQNITISSSVIGTGDDCISIV 298          
BLAST of EH117794 vs. ExPASy Swiss-Prot
Match: ADPG2_ARATH (Polygalacturonase ADPG2 OS=Arabidopsis thaliana GN=ADPG2 PE=2 SV=2)

HSP 1 Score: 102.064 bits (253), Expect = 9.499e-22
Identity = 47/87 (54.02%), Postives = 64/87 (73.56%), Query Frame = -2
Query:   22 NITNPCRHAPTAITFHKCKNLKVQSLRVVNSQQMHIAFTNCLRVVISNLEVIAPAESPNTDGIHISASRGVEVKNSIVGTGDDCISI 282
            N   PC  APTA+TF+  K+L V++L+V N+QQ+ I+   C  V +SN+ V APA+SPNTDGIHI+ ++ + V  SI+GTGDDCISI
Sbjct:  183 NKAKPCTKAPTALTFYNSKSLIVKNLKVRNAQQIQISIEKCSNVQVSNVVVTAPADSPNTDGIHITNTQNIRVSESIIGTGDDCISI 269          
BLAST of EH117794 vs. ExPASy Swiss-Prot
Match: PGLR4_ARATH (Polygalacturonase At1g48100 OS=Arabidopsis thaliana GN=At1g48100 PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 7.045e-17
Identity = 40/88 (45.45%), Postives = 58/88 (65.91%), Query Frame = -2
Query:   22 SNITNPCRHAPTAITFHKCKNLKVQSLRVVNSQQMHIAFTNCLRVVISNLEVIAPAESPNTDGIHISASRGVEVKNSIVGTGDDCISI 285
            S+ + PC  +PT I F    N++V+ LR+ NS Q H+ F  C  V+I+ +++ +P  SPNTDGIH+  +R V + NS+V  GDDCISI
Sbjct:  201 SSSSGPCA-SPTMIRFFMSNNIEVKGLRIQNSPQFHMKFDGCQGVLINEIQISSPKLSPNTDGIHLGNTRSVGIYNSVVSNGDDCISI 287          
BLAST of EH117794 vs. ExPASy Swiss-Prot
Match: PGLR2_CRYJA (Polygalacturonase OS=Cryptomeria japonica PE=1 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 8.612e-15
Identity = 36/81 (44.44%), Postives = 52/81 (64.20%), Query Frame = -2
Query:   22 RHAPTAITFHKCKNLKVQSLRVVNSQQMHIAFTNCLRVVISNLEVIAPAESPNTDGIHISASRGVEVKNSIVGTGDDCISI 264
            R  PTAI F     L +Q L+++NS + H+ F NC  V I  + + AP +SPNTDGI I AS+   ++ + +GTGDDC++I
Sbjct:  180 RDRPTAIKFDFSTGLIIQGLKLMNSPEFHLVFGNCEGVKIIGISITAPRDSPNTDGIDIFASKNFHLQKNTIGTGDDCVAI 260          
The following BLAST results are available for this feature:
BLAST of EH117794 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 25
Match NameE-valueIdentityDescription
PGLR5_ARATH2.665e-3270.00Probable polygalacturonase At1g80170 OS=Arabidopsi... [more]
PGLR_SOLLC1.199e-2456.82Polygalacturonase-2 OS=Solanum lycopersicum GN=PG2... [more]
PGLR_PERAE1.015e-2357.83Polygalacturonase OS=Persea americana PE=2 SV=1[more]
PGLR_ACTDE1.326e-2350.56Polygalacturonase OS=Actinidia deliciosa PE=2 SV=1[more]
QRT2_ARATH6.579e-2355.95Polygalacturonase QRT2 OS=Arabidopsis thaliana GN=... [more]
ADPG1_ARATH1.914e-2254.12Polygalacturonase ADPG1 OS=Arabidopsis thaliana GN... [more]
PGLR_MALDO5.569e-2251.76Polygalacturonase OS=Malus domestica PE=2 SV=1[more]
ADPG2_ARATH9.499e-2254.02Polygalacturonase ADPG2 OS=Arabidopsis thaliana GN... [more]
PGLR4_ARATH7.045e-1745.45Polygalacturonase At1g48100 OS=Arabidopsis thalian... [more]
PGLR2_CRYJA8.612e-1544.44Polygalacturonase OS=Cryptomeria japonica PE=1 SV=... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionfjfw23 Different expression profile of FJWC and FJ72-1 Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EH117794 ID=EH117794; Name=EH117794; organism=Citrus sinensis; type=EST; length=298bp
GACTGCGTACCAATTCACAACTATAGATATGCAGTCATCTCCTGTTCCAA
CTATGCTATTCTTGACTTCAACACCACGAGATGCACTGATGTGTATCCCA
TCCGTATTAGGACTTTCAGCAGGTGCAATCACTTCGAGATTGGATATCAC
AACCCGTAGACAATTAGTGAATGCAATGTGCATTTGTTGACTGTTGACTA
CCCTAAGGCTCTGAACTTTCAAATTCTTGCACTTATGAAAAGTAATAGCC
GTTGGAGCATGTCGACATGGATTTGTTATGTTACTCAGGACTCATCGT
back to top