EY664786

Overview
NameEY664786
Unique NameEY664786
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length893
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY664786 vs. ExPASy Swiss-Prot
Match: TIG_SYNJA (Trigger factor OS=Synechococcus sp. (strain JA-3-3Ab) GN=tig PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.588e-13
Identity = 41/170 (24.12%), Postives = 86/170 (50.59%), Query Frame = 2
Query:   38 TIEQVKETLLQKCREVEQTAKDQATDNAILDQLYKMVEIDIPQSLFEEQGRQLYGAQLLQMQAVMKLNEQQLAALSS---PKAVKEFLENQRENITNVIKQNLAVGDIFKRENLQFSTEDLVKEVENSIAELKQQKQEYDEDCVREQVQDILEGAKVLEWLREHAEIQYI 538
            T+ +++E L ++  +      ++  + AIL+ + +  E+D+P++L E++  QL    L  +Q    +   ++    S   P+ + + +E  R    N +++ LA+  I ++E +     +L  EVE  +A   QQ Q+ D + VR+ V + L   KV+ WL+    + ++
Sbjct:  270 TVAELREHLQKRLEQDALRQSEENLETAILNAILETTEVDLPETLVEQETTQLLARSLQSLQQQQGVTPGEIRKFLSQLPPETLNQLMERHRPEAINRLRRTLALSAIVRQEQIAVGPNELEVEVEEVMAAYAQQGQKLDRERVRQAVHEDLLANKVMAWLKSQTTVNWV 439          
BLAST of EY664786 vs. ExPASy Swiss-Prot
Match: TIG_NOSP7 (Trigger factor OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) GN=tig PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 5.107e-12
Identity = 42/169 (24.85%), Postives = 92/169 (54.44%), Query Frame = 2
Query:   38 TIEQVKETLLQKCREVEQTAKDQATDNAILDQLYKMVEIDIPQSLFEEQGRQLYGAQLLQMQAVMKLNEQQLAA--LSSPKAVKEFLENQRENITNVIKQNLAVGDIFKRENLQFSTEDLVKEVENSIAELKQQKQEYDEDCVREQVQDILEGAKVLEWLREHAEIQYI 538
            T+E+++ +L+++ ++            A+L +L K VE+D+P +L E++         +  Q  M+L++Q L    L +   + +  E  R      IK++L++ ++ KRE+++ + E++   V+  + +  ++K E DED +R  V++ L   K ++WL EH+ ++ +
Sbjct:  279 TLEELRASLVERYQKEADDKTKTNKQEALLTELLKHVEVDLPLTLVEQE------VDAMLTQTAMRLSQQGLDVRKLFTQDIIPQLRERSRTEAIERIKRSLSLREVGKRESIEVTPEEIGVRVKELLEQYPEEK-EVDEDRLRSIVENELLTEKTIDWLLEHSSVELV 440          
BLAST of EY664786 vs. ExPASy Swiss-Prot
Match: TIG_SYNJB (Trigger factor OS=Synechococcus sp. GN=tig PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 6.670e-12
Identity = 39/169 (23.08%), Postives = 87/169 (51.48%), Query Frame = 2
Query:   38 TIEQVKETLLQKCREVEQTAKDQATDNAILDQLYKMVEIDIPQSLFEEQGRQLYGAQL--LQMQAVMKLNEQQLAALSSPKAVKEFLENQRENITNVIKQNLAVGDIFKRENLQFSTEDLVKEVENSIAELKQQKQEYDEDCVREQVQDILEGAKVLEWLREHAEIQYI 538
            T+ +++E L ++  +      ++  + AIL+ + +  E+D+P++L E++  QL    L  L+ + +     ++  +   P+ + +  E  R    + +++ LA+  I ++E +   + +L  EVE  +A   QQ Q+ D + VR+ V + L   KV+ WL+    + ++
Sbjct:  270 TVAELREHLQKRLEQDALRQSEENLETAILNAILETTEVDLPETLIEQETTQLLAQSLQALRQEGIKPGELRKFLSELPPETLNQLKERHRPEAIDRLRRTLALSAIVRQEQIAVGSTELDVEVEEVMAAYAQQGQKLDRERVRQAVYESLLTNKVMAWLKSQTTVNWV 438          
BLAST of EY664786 vs. ExPASy Swiss-Prot
Match: TIG_CALS8 (Trigger factor OS=Caldicellulosiruptor saccharolyticus (strain ATCC 43494 / DSM 8903) GN=tig PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 1.138e-11
Identity = 51/168 (30.36%), Postives = 89/168 (52.98%), Query Frame = 2
Query:   38 TIEQVKETLLQKCREV-EQTAKDQATDNAILDQLYKMVEIDIPQSLFEEQGRQLYGAQLLQMQAVMKLNEQQLAALSSPKAVKEFLENQRENITNVIKQNLAVGDIFKRENLQFSTEDLVKEVENSIAELKQQKQEYDEDCVREQVQDILEGA---KVLEWLREHAEI 529
            T+E++K ++  + +E  ++ AKD+  D AIL+++ +  EIDIP+ + E Q        +  +Q      E+ L A+   K  KEF E  RE  T  I+ NL +  I K EN+Q + E+L KE+E        + ++  E    + ++ I EG    K ++++ E+A+I
Sbjct:  262 TLEELKASIRNRIKEKNDKRAKDEMID-AILEKIAQATEIDIPEPMIENQINYYVEDVVRNLQYFGMTYEKYLEAIG--KTDKEFREQFRERATKAIRNNLILEKIAKVENIQATDEELEKELERLAKMYNLEVEKLKERLSEDDIEYIKEGIILNKAIDFIYENAKI 426          
BLAST of EY664786 vs. ExPASy Swiss-Prot
Match: TIG_TRIEI (Trigger factor OS=Trichodesmium erythraeum (strain IMS101) GN=tig PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 9.632e-11
Identity = 40/169 (23.67%), Postives = 89/169 (52.66%), Query Frame = 2
Query:   38 TIEQVKETLLQKCREVEQTAKDQATDNAILDQLYKMVEIDIPQSLFEEQGRQLYGAQLLQMQAVMKLNEQ--QLAALSSPKAVKEFLENQRENITNVIKQNLAVGDIFKRENLQFSTEDLVKEVENSIAELKQQKQEYDEDCVREQVQDILEGAKVLEWLREHAEIQYI 538
            TI++++E L QK  + ++    Q  + AI+D+L   +E++IP++L + + +Q+        Q+ M L++    +    S + + E  E  R      +K++L +  + KRE++    E++  E +  + +LK+  +++D D +R+ V   L   K ++WL  +  ++ +
Sbjct:  276 TIDKLREFLEQKFTKEKEEKTKQNKEKAIIDELVTHLEVEIPETLIKNEVQQMLA------QSAMDLSQYGIDVKEFFSSEKLPEMQERTRPEAIERLKRDLVIATVAKRESITVDEEEIKAESQKVVKQLKE--KDFDSDRLRQVVTQELLKEKTIKWLEANGTVELV 436          
The following BLAST results are available for this feature:
BLAST of EY664786 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
TIG_SYNJA1.588e-1324.12Trigger factor OS=Synechococcus sp. (strain JA-3-3... [more]
TIG_NOSP75.107e-1224.85Trigger factor OS=Nostoc punctiforme (strain ATCC ... [more]
TIG_SYNJB6.670e-1223.08Trigger factor OS=Synechococcus sp. GN=tig PE=3 SV... [more]
TIG_CALS81.138e-1130.36Trigger factor OS=Caldicellulosiruptor saccharolyt... [more]
TIG_TRIEI9.632e-1123.67Trigger factor OS=Trichodesmium erythraeum (strain... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C1-101-070-D12-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY664786 ID=EY664786; Name=EY664786; organism=Citrus sinensis; type=EST; length=893bp
TGACTCCCTTGCTGGAAAGCTTCTTCCCGGGTGCACTACCATAGAGCAGG
TCAAGGAAACATTATTGCAGAAGTGTCGAGAAGTGGAGCAAACTGCAAAA
GACCAGGCGACTGATAATGCAATTCTAGACCAGCTTTACAAGATGGTGGA
AATTGATATTCCTCAATCCTTGTTTGAGGAACAAGGAAGGCAGCTTTATG
GGGCTCAACTTTTGCAGATGCAGGCAGTTATGAAATTGAACGAACAGCAG
TTGGCTGCTCTATCAAGCCCAAAAGCAGTAAAAGAGTTTCTGGAAAACCA
GAGGGAGAACATAACCAATGTGATAAAACAGAATCTAGCCGTCGGAGATA
TCTTTAAACGTGAAAATTTGCAGTTTTCGACTGAAGACTTAGTCAAAGAA
GTTGAAAACTCCATTGCTGAATTAAAACAACAGAAACAAGAATATGATGA
GGATTGCGTAAGAGAACAGGTGCAAGACATACTCGAAGGAGCTAAAGTTC
TCGAATGGTTGAGAGAACATGCAGAAATTCAGTACATAACCAGATGAGAA
CATAACCAATAATATGAAAAGGAGCTAGAGTTGGCAGGAGCCGGATACGA
ATTGCATTGCAGATGCATTGGTGTCTCTGCAAAATTTTGTATTGTAGAGA
CTCGTTGTATAGCAATTGTTGTACAAGATAGTTATCGACAGAAGTGTTTT
TGCTGTGTTGGGGTTTTAGAGAGGATGGTTCATGATCAGCCCAAAATGCA
ATTTTTGTCCATCTAATATGAATTAACTTTCTTNNNNNAAAAAAAAANNN
NNNNAANNNAAAAAAAAAAAAAANNNGGGGGCGGGCGCGCCTTATGTTTT
CTTTTGGTGAGATAATACAATCAATTTTTACTTAATAAAGAAA
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