EH117778

Overview
NameEH117778
Unique NameEH117778
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length274
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig4023 contig Csv1_Contig4023:298..571. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EH117778 vs. ExPASy Swiss-Prot
Match: RL131_ARATH (60S ribosomal protein L13-1 OS=Arabidopsis thaliana GN=RPL13B PE=1 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 4.523e-32
Identity = 67/82 (81.71%), Postives = 73/82 (89.02%), Query Frame = -3
Query:   18 IHKKLAPTIGVSVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEELATATQVQGPYMPIAPEKPTVEPV 263
            I KKLAPTIG++VDHRRKNRSLEGLQ+NVQRLKTYK KLV+FPRRARK KAGDS PEELA ATQVQG Y+PI  EKPT+E V
Sbjct:   84 IPKKLAPTIGIAVDHRRKNRSLEGLQTNVQRLKTYKTKLVIFPRRARKVKAGDSTPEELANATQVQGDYLPIVREKPTMELV 165          
BLAST of EH117778 vs. ExPASy Swiss-Prot
Match: RL133_ARATH (60S ribosomal protein L13-3 OS=Arabidopsis thaliana GN=RPL13D PE=2 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 3.829e-31
Identity = 68/82 (82.93%), Postives = 72/82 (87.80%), Query Frame = -3
Query:   18 IHKKLAPTIGVSVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEELATATQVQGPYMPIAPEKPTVEPV 263
            I KKLAPTIG+SVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRR+R+ KAGDS PEELA ATQVQG YMPIA  K  +E V
Sbjct:   84 IPKKLAPTIGISVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRSRQVKAGDSTPEELANATQVQGDYMPIASVKAAMELV 165          
BLAST of EH117778 vs. ExPASy Swiss-Prot
Match: RL132_BRANA (60S ribosomal protein L13-2 OS=Brassica napus PE=2 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 8.529e-31
Identity = 67/82 (81.71%), Postives = 71/82 (86.59%), Query Frame = -3
Query:   18 IHKKLAPTIGVSVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEELATATQVQGPYMPIAPEKPTVEPV 263
            I KKLAPTIG+S+DHRRKNRSLEGLQSNVQRLKTYKAKLV+FPRRARK KAGDS  EELA ATQVQG YMPI  EK  +E V
Sbjct:   84 IPKKLAPTIGISLDHRRKNRSLEGLQSNVQRLKTYKAKLVIFPRRARKVKAGDSTAEELANATQVQGDYMPIVREKQAMELV 165          
BLAST of EH117778 vs. ExPASy Swiss-Prot
Match: RL131_BRANA (60S ribosomal protein L13-1 OS=Brassica napus PE=2 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 1.455e-30
Identity = 67/82 (81.71%), Postives = 70/82 (85.37%), Query Frame = -3
Query:   18 IHKKLAPTIGVSVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEELATATQVQGPYMPIAPEKPTVEPV 263
            I KKLAPTIG++VDHRRKNRSLEGLQSNVQRLKTYKAKLV+FPRRARK KAGDS  EELA ATQVQG YMPI  EK   E V
Sbjct:   84 IPKKLAPTIGIAVDHRRKNRSLEGLQSNVQRLKTYKAKLVIFPRRARKVKAGDSTAEELANATQVQGDYMPIVREKHATELV 165          
BLAST of EH117778 vs. ExPASy Swiss-Prot
Match: RL132_ARATH (Putative 60S ribosomal protein L13-2 OS=Arabidopsis thaliana GN=RPL13C PE=3 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 5.721e-27
Identity = 61/82 (74.39%), Postives = 67/82 (81.71%), Query Frame = -3
Query:   18 IHKKLAPTIGVSVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEELATATQVQGPYMPIAPEKPTVEPV 263
            I KKLAPTIG+SVDH RKNRSLEG Q+NVQRLKTYKAKLV+FPR AR  K GDSA +ELA ATQVQ  +MPI  E PT+E V
Sbjct:   84 IPKKLAPTIGISVDHHRKNRSLEGFQTNVQRLKTYKAKLVIFPRCARTVKVGDSAQQELANATQVQVDHMPIVREMPTMELV 165          
BLAST of EH117778 vs. ExPASy Swiss-Prot
Match: RL13_DANRE (60S ribosomal protein L13 OS=Danio rerio GN=rpl13 PE=2 SV=3)

HSP 1 Score: 96.6709 bits (239), Expect = 3.971e-20
Identity = 47/72 (65.28%), Postives = 57/72 (79.17%), Query Frame = -3
Query:   48 IHKKLAPTIGVSVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEELATATQVQGPYMPI 263
            I+KK+A TIG+SVD RR+NRS E LQ+NVQRLK Y+ KL++FPR+A K K GDS  EEL  ATQ+ GP MPI
Sbjct:   86 INKKVARTIGISVDSRRRNRSTESLQANVQRLKEYRTKLIIFPRKAAKPKKGDSTEEELKMATQLTGPVMPI 157          
BLAST of EH117778 vs. ExPASy Swiss-Prot
Match: RL13_TOBAC (60S ribosomal protein L13 OS=Nicotiana tabacum GN=RPL13 PE=2 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 1.509e-19
Identity = 48/76 (63.16%), Postives = 57/76 (75.00%), Query Frame = -3
Query:   36 IHKKLAPTIGVSVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEELATATQVQGPYMPIAPEK 263
            I KKLAPTIG++VDHRR+NRSLEGLQ+NVQRL+  + +LVVFPRRA + +     P    TATQV G YMPI  EK
Sbjct:   80 IPKKLAPTIGIAVDHRRRNRSLEGLQTNVQRLEDLQGQLVVFPRRASRSRLVILPPRNCLTATQVHGAYMPIEREK 155          
BLAST of EH117778 vs. ExPASy Swiss-Prot
Match: RL13_RAT (60S ribosomal protein L13 OS=Rattus norvegicus GN=Rpl13 PE=1 SV=2)

HSP 1 Score: 93.9745 bits (232), Expect = 2.574e-19
Identity = 45/72 (62.50%), Postives = 57/72 (79.17%), Query Frame = -3
Query:   48 IHKKLAPTIGVSVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEELATATQVQGPYMPI 263
            IHKK+A TIG+SVD RR+N+S E LQ+NVQRLK Y++KL++FPR+    K GDS+ EEL  ATQ+ GP MPI
Sbjct:   86 IHKKMARTIGISVDPRRRNKSTESLQANVQRLKEYRSKLILFPRKPSAPKKGDSSAEELKLATQLTGPVMPI 157          
BLAST of EH117778 vs. ExPASy Swiss-Prot
Match: RL13_MOUSE (60S ribosomal protein L13 OS=Mus musculus GN=Rpl13 PE=2 SV=3)

HSP 1 Score: 93.5893 bits (231), Expect = 3.362e-19
Identity = 45/72 (62.50%), Postives = 57/72 (79.17%), Query Frame = -3
Query:   48 IHKKLAPTIGVSVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEELATATQVQGPYMPI 263
            IHKK+A TIG+SVD RR+N+S E LQ+NVQRLK Y++KL++FPR+    K GDS+ EEL  ATQ+ GP MPI
Sbjct:   86 IHKKVARTIGISVDPRRRNKSTESLQANVQRLKEYRSKLILFPRKPSAPKKGDSSAEELKLATQLTGPVMPI 157          
BLAST of EH117778 vs. ExPASy Swiss-Prot
Match: RL13_HUMAN (60S ribosomal protein L13 OS=Homo sapiens GN=RPL13 PE=1 SV=4)

HSP 1 Score: 93.2041 bits (230), Expect = 4.391e-19
Identity = 44/72 (61.11%), Postives = 57/72 (79.17%), Query Frame = -3
Query:   48 IHKKLAPTIGVSVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEELATATQVQGPYMPI 263
            IHKK+A TIG+SVD RR+N+S E LQ+NVQRLK Y++KL++FPR+    K GDS+ EEL  ATQ+ GP MP+
Sbjct:   86 IHKKVARTIGISVDPRRRNKSTESLQANVQRLKEYRSKLILFPRKPSAPKKGDSSAEELKLATQLTGPVMPV 157          
The following BLAST results are available for this feature:
BLAST of EH117778 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 21
Match NameE-valueIdentityDescription
RL131_ARATH4.523e-3281.7160S ribosomal protein L13-1 OS=Arabidopsis thalian... [more]
RL133_ARATH3.829e-3182.9360S ribosomal protein L13-3 OS=Arabidopsis thalian... [more]
RL132_BRANA8.529e-3181.7160S ribosomal protein L13-2 OS=Brassica napus PE=2... [more]
RL131_BRANA1.455e-3081.7160S ribosomal protein L13-1 OS=Brassica napus PE=2... [more]
RL132_ARATH5.721e-2774.39Putative 60S ribosomal protein L13-2 OS=Arabidopsi... [more]
RL13_DANRE3.971e-2065.2860S ribosomal protein L13 OS=Danio rerio GN=rpl13 ... [more]
RL13_TOBAC1.509e-1963.1660S ribosomal protein L13 OS=Nicotiana tabacum GN=... [more]
RL13_RAT2.574e-1962.5060S ribosomal protein L13 OS=Rattus norvegicus GN=... [more]
RL13_MOUSE3.362e-1962.5060S ribosomal protein L13 OS=Mus musculus GN=Rpl13... [more]
RL13_HUMAN4.391e-1961.1160S ribosomal protein L13 OS=Homo sapiens GN=RPL13... [more]

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Libraries
Library NameType
Different expression profile of FJWC and FJ72-1cdna_library
Properties
Property NameValue
Genbank descriptionfjfw38 Different expression profile of FJWC and FJ72-1 Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EH117778 ID=EH117778|Name=EH117778|organism=Citrus sinensis|type=EST|length=274bp
GACGATGAGTCCTGAGTAACAGGCTCGACAGTAGGCTTCTCAGGAGCAAT
GGGCATGTAAGGTCCTTGTACTTGAGTTGCTGTTGCCAATTCCTCAGGGG
CAGAATCACCAGCCTTGAACTTGCGAGCACGTCTTGGGAAAACAACCAAC
TTAGCCTTGTAAGTCTTGAGCCTCTGAACATTAGATTGAAGACCCTCAAG
AGAACGGTTCTTGCGTCGATGATCGACTGAAACACCAATTGTCGGAGCCA
GTTTCTTGTGAATTGGTACGCAGT
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