EG358378

Overview
NameEG358378
Unique NameEG358378
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length236
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5764 contig Csv1_Contig5764:357..591. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EG358378 vs. ExPASy Swiss-Prot
Match: RD23C_ARATH (Putative DNA repair protein RAD23-3 OS=Arabidopsis thaliana GN=RAD23-3 PE=2 SV=2)

HSP 1 Score: 124.405 bits (311), Expect = 1.784e-28
Identity = 61/78 (78.21%), Postives = 67/78 (85.90%), Query Frame = 3
Query:    3 GQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASA-GGQAGXPP 233
            GQAASNL AGSNLE+T+QQILDMGGG+WDRETV+ ALRAA+NNPERAVEYLY+GIPEQ  VPPVAR  A  GQ   PP
Sbjct:  175 GQAASNLAAGSNLESTIQQILDMGGGTWDRETVVLALRAAFNNPERAVEYLYTGIPEQAEVPPVARPPASAGQPANPP 252          
BLAST of EG358378 vs. ExPASy Swiss-Prot
Match: RD23D_ARATH (Putative DNA repair protein RAD23-4 OS=Arabidopsis thaliana GN=RAD23-4 PE=2 SV=2)

HSP 1 Score: 123.635 bits (309), Expect = 3.043e-28
Identity = 59/77 (76.62%), Postives = 67/77 (87.01%), Query Frame = 3
Query:    3 GQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGXPP 233
            GQAASNLVAG+ LE+TVQQILDMGGGSWDR+TV+RALRAA+NNPERAVEYLYSGIP Q  +PPVA+A A G+    P
Sbjct:  136 GQAASNLVAGTTLESTVQQILDMGGGSWDRDTVVRALRAAFNNPERAVEYLYSGIPAQAEIPPVAQAPATGEQAANP 212          
BLAST of EG358378 vs. ExPASy Swiss-Prot
Match: RD23A_ARATH (Putative DNA repair protein RAD23-1 OS=Arabidopsis thaliana GN=RAD23-1 PE=2 SV=3)

HSP 1 Score: 103.99 bits (258), Expect = 2.495e-22
Identity = 52/77 (67.53%), Postives = 59/77 (76.62%), Query Frame = 3
Query:    3 GQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVP-PVARASAGGQAGXP 230
            GQAAS LV+GS+LE  VQQI++MGGGSWD+ETV RALRAAYNNPERAV+YLYSGIP+   V  PV  A   G    P
Sbjct:  136 GQAASTLVSGSSLEQMVQQIMEMGGGSWDKETVTRALRAAYNNPERAVDYLYSGIPQTAEVAVPVPEAQIAGSGAAP 212          
BLAST of EG358378 vs. ExPASy Swiss-Prot
Match: RD23B_ARATH (Putative DNA repair protein RAD23-2 OS=Arabidopsis thaliana GN=RAD23-2 PE=2 SV=2)

HSP 1 Score: 103.605 bits (257), Expect = 3.259e-22
Identity = 50/79 (63.29%), Postives = 62/79 (78.48%), Query Frame = 3
Query:    3 GQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPP--VARASAGGQAGXPP 233
            GQAAS LV+GS++E  VQQI++MGGGSWD+ETV RALRAAYNNPERAV+YLYSGIPE   +P   ++   +G +   PP
Sbjct:  134 GQAASTLVSGSSIEQMVQQIMEMGGGSWDKETVTRALRAAYNNPERAVDYLYSGIPETVTIPATNLSGVGSGRELTAPP 212          
BLAST of EG358378 vs. ExPASy Swiss-Prot
Match: RAD23_ORYSJ (Probable DNA repair protein RAD23 OS=Oryza sativa subsp. japonica GN=RAD23 PE=1 SV=2)

HSP 1 Score: 102.449 bits (254), Expect = 7.260e-22
Identity = 47/62 (75.81%), Postives = 54/62 (87.10%), Query Frame = 3
Query:    3 GQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVP 188
            GQA SNLVAGSNLEAT+Q IL+MGGG WDR+ V+ AL AA+NNPERAVEYLYSG+PEQ  +P
Sbjct:  146 GQATSNLVAGSNLEATIQSILEMGGGIWDRDIVLHALSAAFNNPERAVEYLYSGVPEQMDIP 207          
The following BLAST results are available for this feature:
BLAST of EG358378 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
RD23C_ARATH1.784e-2878.21Putative DNA repair protein RAD23-3 OS=Arabidopsis... [more]
RD23D_ARATH3.043e-2876.62Putative DNA repair protein RAD23-4 OS=Arabidopsis... [more]
RD23A_ARATH2.495e-2267.53Putative DNA repair protein RAD23-1 OS=Arabidopsis... [more]
RD23B_ARATH3.259e-2263.29Putative DNA repair protein RAD23-2 OS=Arabidopsis... [more]
RAD23_ORYSJ7.260e-2275.81Probable DNA repair protein RAD23 OS=Oryza sativa ... [more]
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Properties
Property NameValue
Genbank description3g6 Citrus sinensis flesh suppression subtractive hybridization (SSH) cDNA library Blonde cadenera cultivar Citrus sinensis cDNA clone Cl0003g6, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EG358378 ID=EG358378; Name=EG358378; organism=Citrus sinensis; type=EST; length=236bp
ACGGCCAAGCTGCATCAAATCTTGTTGCAGGAAGTAATTTAGAAGCTACT
GTCCAACAGATTCTTGATATGGGTGGAGGGAGTTGGGACCGAGAAACTGT
TATTCGTGCTTTACGTGCTGCATATAACAACCCTGAAAGAGCTGTTGAAT
ATCTGTATTCTGGAATACCTGAGCAGACTGCAGTTCCACCTGTTGCTCGC
GCTTCTGCTGGTGGGCAGGCAGGNAANCCNCCCTGC
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