EG358366

Overview
NameEG358366
Unique NameEG358366
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length474
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EG358366_ssr47 microsatellite EG358366_ssr47:47..60. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig6871 contig Csv1_Contig6871:1..473. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EG358366 vs. ExPASy Swiss-Prot
Match: NDUA2_BOVIN (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 2 OS=Bos taurus GN=NDUFA2 PE=1 SV=2)

HSP 1 Score: 82.4185 bits (202), Expect = 1.084e-15
Identity = 39/87 (44.83%), Postives = 57/87 (65.52%), Query Frame = 3
Query:   69 RGQLSRSMKELRILLCQXXXXXXXXXXFVERNYKELKTLNPKLPILIRECSGIEPQLWARYDMGVEKGIGLDGLNEAQIAKALKDLV 329
            RG+L   ++E+RI LCQ          F+E+ Y ELK  NP LPILIRECS ++P+LWARY  G EK + L+  +  Q+ +AL++++
Sbjct:   11 RGKLG--LREIRIHLCQRSPGSQGVRDFIEKRYVELKKANPDLPILIRECSDVQPKLWARYAFGQEKNVSLNNFSADQVTRALENVL 95          
BLAST of EG358366 vs. ExPASy Swiss-Prot
Match: NDUA2_PONPY (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 2 OS=Pongo pygmaeus GN=NDUFA2 PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 2.414e-15
Identity = 36/81 (44.44%), Postives = 54/81 (66.67%), Query Frame = 3
Query:   90 MKELRILLCQXXXXXXXXXXFVERNYKELKTLNPKLPILIRECSGIEPQLWARYDMGVEKGIGLDGLNEAQIAKALKDLVR 332
            ++E+RI LCQ          F+E+ Y ELK  NP LPILIRECS ++P+LWARY  G EK + L+  +  Q+ +AL+++++
Sbjct:   16 LREIRIHLCQRSPGSQGVRDFIEKRYVELKKANPDLPILIRECSDVQPKLWARYAFGQEKNVPLNNFSADQVTRALENVLK 96          
BLAST of EG358366 vs. ExPASy Swiss-Prot
Match: NDUA2_PONAB (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 2 OS=Pongo abelii GN=NDUFA2 PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 2.414e-15
Identity = 36/81 (44.44%), Postives = 54/81 (66.67%), Query Frame = 3
Query:   90 MKELRILLCQXXXXXXXXXXFVERNYKELKTLNPKLPILIRECSGIEPQLWARYDMGVEKGIGLDGLNEAQIAKALKDLVR 332
            ++E+RI LCQ          F+E+ Y ELK  NP LPILIRECS ++P+LWARY  G EK + L+  +  Q+ +AL+++++
Sbjct:   16 LREIRIHLCQRSPGSQGVRDFIEKRYVELKKANPDLPILIRECSDVQPKLWARYAFGQEKNVPLNNFSADQVTRALENVLK 96          
BLAST of EG358366 vs. ExPASy Swiss-Prot
Match: NDUA2_MACFA (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 2 OS=Macaca fascicularis GN=NDUFA2 PE=3 SV=3)

HSP 1 Score: 80.4925 bits (197), Expect = 4.118e-15
Identity = 36/80 (45.00%), Postives = 53/80 (66.25%), Query Frame = 3
Query:   90 MKELRILLCQXXXXXXXXXXFVERNYKELKTLNPKLPILIRECSGIEPQLWARYDMGVEKGIGLDGLNEAQIAKALKDLV 329
            ++E+RI LCQ          F+E+ Y ELK  NP LPILIRECS ++P+LWARY  G EK + L+  +  Q+ +AL++++
Sbjct:   16 LREIRIHLCQRSPGSQGVRDFIEKRYVELKKANPDLPILIRECSDVQPKLWARYAFGQEKNVPLNNFSADQVTRALENVL 95          
BLAST of EG358366 vs. ExPASy Swiss-Prot
Match: NDUA2_HUMAN (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 2 OS=Homo sapiens GN=NDUFA2 PE=1 SV=3)

HSP 1 Score: 78.1814 bits (191), Expect = 2.044e-14
Identity = 35/80 (43.75%), Postives = 52/80 (65.00%), Query Frame = 3
Query:   90 MKELRILLCQXXXXXXXXXXFVERNYKELKTLNPKLPILIRECSGIEPQLWARYDMGVEKGIGLDGLNEAQIAKALKDLV 329
            ++E+RI LCQ          F+E+ Y ELK  NP LPILIRECS ++P+LWARY  G E  + L+  +  Q+ +AL++++
Sbjct:   16 LREIRIHLCQRSPGSQGVRDFIEKRYVELKKANPDLPILIRECSDVQPKLWARYAFGQETNVPLNNFSADQVTRALENVL 95          
BLAST of EG358366 vs. ExPASy Swiss-Prot
Match: NDUA2_GORGO (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 2 OS=Gorilla gorilla gorilla GN=NDUFA2 PE=3 SV=3)

HSP 1 Score: 75.0998 bits (183), Expect = 1.730e-13
Identity = 34/80 (42.50%), Postives = 51/80 (63.75%), Query Frame = 3
Query:   90 MKELRILLCQXXXXXXXXXXFVERNYKELKTLNPKLPILIRECSGIEPQLWARYDMGVEKGIGLDGLNEAQIAKALKDLV 329
            ++E+RI LCQ          F+E+ Y ELK  N  LPILIRECS ++P+LWARY  G E  + L+  +  Q+ +AL++++
Sbjct:   16 LREIRIHLCQRSPGSRGVRDFIEKRYVELKKANSDLPILIRECSDVQPKLWARYAFGQETNVPLNNFSADQVTRALENVL 95          
BLAST of EG358366 vs. ExPASy Swiss-Prot
Match: NDUA2_MOUSE (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 2 OS=Mus musculus GN=Ndufa2 PE=1 SV=3)

HSP 1 Score: 74.7146 bits (182), Expect = 2.260e-13
Identity = 32/80 (40.00%), Postives = 53/80 (66.25%), Query Frame = 3
Query:   90 MKELRILLCQXXXXXXXXXXFVERNYKELKTLNPKLPILIRECSGIEPQLWARYDMGVEKGIGLDGLNEAQIAKALKDLV 329
            ++E+R+ LCQ          F+ + Y ELK  +P LPILIRECS ++P+LWARY  G EK + L+ L+  ++ +A+++++
Sbjct:   16 LREIRVHLCQRSPGSQGVRDFIVQRYVELKKAHPNLPILIRECSEVQPKLWARYAFGQEKTVSLNNLSADEVTRAMQNVL 95          
BLAST of EG358366 vs. ExPASy Swiss-Prot
Match: NDUA2_NEUCR (NADH-ubiquinone oxidoreductase 10.5 kDa subunit OS=Neurospora crassa GN=nuo-10.5 PE=4 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 2.498e-12
Identity = 35/91 (38.46%), Postives = 54/91 (59.34%), Query Frame = 3
Query:   60 MAWRGQLSRSMKELRILLCQXXXXXXXXXXFVERNYKELKTLNPKLPILIRECSGIEPQLWARYDMGVEKGIGLDGLNEAQIAKALKDLVR 332
            M+ R   ++ +KE+R L CQ          F+ RNY  +K  NP  PILIR+ SG  P+++AR++ G EK   L+GL++ QI + +  LV+
Sbjct:    1 MSGRFAFNKGLKEVRFLFCQTGEHSAATRSFLLRNYPAMKKDNPATPILIRDASGTLPKVYARFEFGKEKSQSLEGLSDQQIEETVSSLVK 91          
The following BLAST results are available for this feature:
BLAST of EG358366 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
NDUA2_BOVIN1.084e-1544.83NADH dehydrogenase [ubiquinone] 1 alpha subcomplex... [more]
NDUA2_PONPY2.414e-1544.44NADH dehydrogenase [ubiquinone] 1 alpha subcomplex... [more]
NDUA2_PONAB2.414e-1544.44NADH dehydrogenase [ubiquinone] 1 alpha subcomplex... [more]
NDUA2_MACFA4.118e-1545.00NADH dehydrogenase [ubiquinone] 1 alpha subcomplex... [more]
NDUA2_HUMAN2.044e-1443.75NADH dehydrogenase [ubiquinone] 1 alpha subcomplex... [more]
NDUA2_GORGO1.730e-1342.50NADH dehydrogenase [ubiquinone] 1 alpha subcomplex... [more]
NDUA2_MOUSE2.260e-1340.00NADH dehydrogenase [ubiquinone] 1 alpha subcomplex... [more]
NDUA2_NEUCR2.498e-1238.46NADH-ubiquinone oxidoreductase 10.5 kDa subunit OS... [more]
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Properties
Property NameValue
Genbank description4c9 Citrus sinensis flesh suppression subtractive hybridization (SSH) cDNA library Blonde cadenera cultivar Citrus sinensis cDNA clone Cl0004c9, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EG358366 ID=EG358366; Name=EG358366; organism=Citrus sinensis; type=EST; length=474bp
ACGCGGGAATTTATTCATCCGTTTCAAGACGGAAGCGAGAGCGAGCGAGA
GAGAGAGAGATGGCATGGAGAGGACAATTATCTCGGAGCATGAAGGAACT
GAGGATCTTACTCTGCCAGACTTCTCCTTCAAGCTCCTCCACTAGATCAT
TTGTAGAGAGGAACTACAAGGAGTTGAAGACTTTAAACCCCAAACTTCCT
ATCTTGATTCGTGAGTGCAGTGGGATTGAGCCCCAGTTATGGGCTAGATA
TGATATGGGTGTTGAGAAGGGCATTGGTTTGGATGGTCTGAATGAGGCAC
AGATCGCAAAGGCACTCAAAGACCTTGTCAGAGCTGGGGAAGCGCCTTAA
GCGTTGATATTGCTACTCTATGATCCATATGAGATGACATAGATGTGTTA
GAAAAATCTTCCTATGACAGTCTGCTCTATTATTTAGCAATCATTTTTGA
TGTACGTCGAGCGCGACCACGCTA
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