CX672135

Overview
NameCX672135
Unique NameCX672135
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length725
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1825 contig Csv1_Contig1825:37..763. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX672135 vs. ExPASy Swiss-Prot
Match: RS23_FRAAN (40S ribosomal protein S23 OS=Fragaria ananassa GN=RPS23 PE=2 SV=1)

HSP 1 Score: 231.491 bits (589), Expect = 3.065e-71
Identity = 111/113 (98.23%), Postives = 112/113 (99.12%), Query Frame = -2
Query:  326 MGKTRGMGAGRKLKSHRRRQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGD 664
            MGKTRGMGA RKLK+HRRRQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGD
Sbjct:    1 MGKTRGMGAARKLKNHRRRQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGD 113          

HSP 2 Score: 59.3066 bits (142), Expect = 3.065e-71
Identity = 29/30 (96.67%), Postives = 30/30 (100.00%), Query Frame = -3
Query:  241 EIPGVRFKVVKVSGVSLLALFKEKKEKPRS 330
            +IPGVRFKVVKVSGVSLLALFKEKKEKPRS
Sbjct:  113 DIPGVRFKVVKVSGVSLLALFKEKKEKPRS 142          
BLAST of CX672135 vs. ExPASy Swiss-Prot
Match: RS23_EUPES (40S ribosomal protein S23 OS=Euphorbia esula GN=RPS23 PE=2 SV=1)

HSP 1 Score: 228.409 bits (581), Expect = 2.565e-70
Identity = 110/113 (97.35%), Postives = 110/113 (97.35%), Query Frame = -2
Query:  326 MGKTRGMGAGRKLKSHRRRQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGD 664
            MGKT GMGA RKLKSHRR QRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGD
Sbjct:    1 MGKTHGMGAARKLKSHRRTQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGD 113          

HSP 2 Score: 59.3066 bits (142), Expect = 2.565e-70
Identity = 29/30 (96.67%), Postives = 30/30 (100.00%), Query Frame = -3
Query:  241 EIPGVRFKVVKVSGVSLLALFKEKKEKPRS 330
            +IPGVRFKVVKVSGVSLLALFKEKKEKPRS
Sbjct:  113 DIPGVRFKVVKVSGVSLLALFKEKKEKPRS 142          
BLAST of CX672135 vs. ExPASy Swiss-Prot
Match: RS232_ARATH (40S ribosomal protein S23-2 OS=Arabidopsis thaliana GN=RPS23B PE=2 SV=2)

HSP 1 Score: 222.246 bits (565), Expect = 1.795e-68
Identity = 108/113 (95.58%), Postives = 108/113 (95.58%), Query Frame = -2
Query:  326 MGKTRGMGAGRKLKSHRRRQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGD 664
            MGKTRGMGAGRKLK  R  QRWADK YKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGD
Sbjct:    1 MGKTRGMGAGRKLKRLRINQRWADKQYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGD 113          

HSP 2 Score: 59.3066 bits (142), Expect = 1.795e-68
Identity = 29/30 (96.67%), Postives = 30/30 (100.00%), Query Frame = -3
Query:  241 EIPGVRFKVVKVSGVSLLALFKEKKEKPRS 330
            +IPGVRFKVVKVSGVSLLALFKEKKEKPRS
Sbjct:  113 DIPGVRFKVVKVSGVSLLALFKEKKEKPRS 142          
BLAST of CX672135 vs. ExPASy Swiss-Prot
Match: RS231_ARATH (40S ribosomal protein S23-1 OS=Arabidopsis thaliana GN=RPS23A PE=2 SV=2)

HSP 1 Score: 213.386 bits (542), Expect = 8.053e-66
Identity = 105/113 (92.92%), Postives = 106/113 (93.81%), Query Frame = -2
Query:  326 MGKTRGMGAGRKLKSHRRRQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGD 664
            MGKTRGMGAGRKLK  R  QRWADK YKKS+ GNEWKKPFA SSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGD
Sbjct:    1 MGKTRGMGAGRKLKQLRITQRWADKHYKKSNRGNEWKKPFACSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGD 113          

HSP 2 Score: 59.3066 bits (142), Expect = 8.053e-66
Identity = 29/30 (96.67%), Postives = 30/30 (100.00%), Query Frame = -3
Query:  241 EIPGVRFKVVKVSGVSLLALFKEKKEKPRS 330
            +IPGVRFKVVKVSGVSLLALFKEKKEKPRS
Sbjct:  113 DIPGVRFKVVKVSGVSLLALFKEKKEKPRS 142          
BLAST of CX672135 vs. ExPASy Swiss-Prot
Match: RS23_LUMRU (40S ribosomal protein S23 OS=Lumbricus rubellus GN=RPS23 PE=2 SV=1)

HSP 1 Score: 196.052 bits (497), Expect = 1.468e-58
Identity = 92/114 (80.70%), Postives = 99/114 (86.84%), Query Frame = -2
Query:  326 MGKTRGMGAGRKLKSHRRRQRWADKSYKKSHLGNEWKK-PFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGD 664
            MGK RG+   RKLK+HRR QRW DK YKKSHLG  WK  PF G+SHAKGIVLEK+G+EAKQPNSAIRKC RVQLIKNGKKI AFVP DGCLN+IEENDEVL+AGFGRKGHAVGD
Sbjct:    1 MGKPRGLRTARKLKNHRREQRWHDKDYKKSHLGTRWKSNPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKITAFVPRDGCLNFIEENDEVLVAGFGRKGHAVGD 114          

HSP 2 Score: 52.373 bits (124), Expect = 1.468e-58
Identity = 24/30 (80.00%), Postives = 29/30 (96.67%), Query Frame = -3
Query:  241 EIPGVRFKVVKVSGVSLLALFKEKKEKPRS 330
            +IPGVRFKVVKV+ VSLLAL+K+KKE+PRS
Sbjct:  114 DIPGVRFKVVKVASVSLLALYKQKKERPRS 143          
BLAST of CX672135 vs. ExPASy Swiss-Prot
Match: RS23_DERVA (40S ribosomal protein S23 OS=Dermacentor variabilis GN=RpS23 PE=2 SV=1)

HSP 1 Score: 192.971 bits (489), Expect = 5.529e-58
Identity = 91/114 (79.82%), Postives = 98/114 (85.96%), Query Frame = -2
Query:  326 MGKTRGMGAGRKLKSHRRRQRWADKSYKKSHLGNEWK-KPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGD 664
            MGK RG+   RK +SHRR QRW DK YKK+HLG  WK  PF G+SHAKGIVLEK+G+EAKQPNSAIRKC RVQLIKNGKKI AFVP DGCLNYIEENDEVL+AGFGRKGHAVGD
Sbjct:    1 MGKPRGLRTARKHRSHRRDQRWHDKDYKKAHLGTRWKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKITAFVPRDGCLNYIEENDEVLVAGFGRKGHAVGD 114          

HSP 2 Score: 53.5286 bits (127), Expect = 5.529e-58
Identity = 25/30 (83.33%), Postives = 29/30 (96.67%), Query Frame = -3
Query:  241 EIPGVRFKVVKVSGVSLLALFKEKKEKPRS 330
            +IPGVRFKVVKV+ VSLLAL+KEKKE+PRS
Sbjct:  114 DIPGVRFKVVKVANVSLLALYKEKKERPRS 143          
BLAST of CX672135 vs. ExPASy Swiss-Prot
Match: RS23_SPOFR (40S ribosomal protein S23 OS=Spodoptera frugiperda GN=RpS23 PE=2 SV=1)

HSP 1 Score: 189.889 bits (481), Expect = 4.616e-57
Identity = 88/114 (77.19%), Postives = 98/114 (85.96%), Query Frame = -2
Query:  326 MGKTRGMGAGRKLKSHRRRQRWADKSYKKSHLGNEWK-KPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGD 664
            MGK RG+   RK  +HRR QRWADK YKK+H+G  WK  PF G+SHAKGIVLEK+G+EAKQPNSAIRKC RVQLIKNGKK+ AFVP DGCLN+IEENDEVL+AGFGRKGHAVGD
Sbjct:    1 MGKPRGIRTARKHVNHRREQRWADKDYKKAHMGTRWKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEENDEVLVAGFGRKGHAVGD 114          

HSP 2 Score: 53.5286 bits (127), Expect = 4.616e-57
Identity = 25/30 (83.33%), Postives = 29/30 (96.67%), Query Frame = -3
Query:  241 EIPGVRFKVVKVSGVSLLALFKEKKEKPRS 330
            +IPGVRFKVVKV+ VSLLAL+KEKKE+PRS
Sbjct:  114 DIPGVRFKVVKVANVSLLALYKEKKERPRS 143          
BLAST of CX672135 vs. ExPASy Swiss-Prot
Match: RS23_PAPDA (40S ribosomal protein S23 OS=Papilio dardanus GN=RpS23 PE=2 SV=1)

HSP 1 Score: 189.889 bits (481), Expect = 4.616e-57
Identity = 88/114 (77.19%), Postives = 98/114 (85.96%), Query Frame = -2
Query:  326 MGKTRGMGAGRKLKSHRRRQRWADKSYKKSHLGNEWK-KPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGD 664
            MGK RG+   RK  +HRR QRWADK YKK+H+G  WK  PF G+SHAKGIVLEK+G+EAKQPNSAIRKC RVQLIKNGKK+ AFVP DGCLN+IEENDEVL+AGFGRKGHAVGD
Sbjct:    1 MGKPRGIRTARKHVNHRREQRWADKDYKKAHMGTRWKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEENDEVLVAGFGRKGHAVGD 114          

HSP 2 Score: 53.5286 bits (127), Expect = 4.616e-57
Identity = 25/30 (83.33%), Postives = 29/30 (96.67%), Query Frame = -3
Query:  241 EIPGVRFKVVKVSGVSLLALFKEKKEKPRS 330
            +IPGVRFKVVKV+ VSLLAL+KEKKE+PRS
Sbjct:  114 DIPGVRFKVVKVANVSLLALYKEKKERPRS 143          
BLAST of CX672135 vs. ExPASy Swiss-Prot
Match: RS23_DROME (40S ribosomal protein S23 OS=Drosophila melanogaster GN=RpS23 PE=2 SV=1)

HSP 1 Score: 188.734 bits (478), Expect = 1.023e-56
Identity = 90/114 (78.95%), Postives = 97/114 (85.09%), Query Frame = -2
Query:  326 MGKTRGMGAGRKLKSHRRRQRWADKSYKKSHLGNEWK-KPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGD 664
            MGK RG+   RK  +HRR QRWADK YKK+HLG  WK  PF G+SHAKGIVLEK+G+EAKQPNSAIRKC RVQLIKNGKKI AFVP DG LNYIEENDEVL+AGFGRKGHAVGD
Sbjct:    1 MGKPRGLRTARKHVNHRRDQRWADKDYKKAHLGTRWKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKITAFVPRDGSLNYIEENDEVLVAGFGRKGHAVGD 114          

HSP 2 Score: 53.5286 bits (127), Expect = 1.023e-56
Identity = 25/30 (83.33%), Postives = 29/30 (96.67%), Query Frame = -3
Query:  241 EIPGVRFKVVKVSGVSLLALFKEKKEKPRS 330
            +IPGVRFKVVKV+ VSLLAL+KEKKE+PRS
Sbjct:  114 DIPGVRFKVVKVANVSLLALYKEKKERPRS 143          
BLAST of CX672135 vs. ExPASy Swiss-Prot
Match: RS23_BRUMA (40S ribosomal protein S23 OS=Brugia malayi GN=rps-23 PE=2 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 1.739e-56
Identity = 90/114 (78.95%), Postives = 100/114 (87.72%), Query Frame = -2
Query:  326 MGKTRGMGAGRKLKSHRRRQRWADKSYKKSHLGNEWK-KPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGD 664
            MGK +G+ A RKLK+HR+ QRW DK YKK+HLG  WK  PF  +SHAKGIVLEK+G+EAKQPNSAIRKC RVQLIKNGKKI AFVPNDGCLN+IEENDEVL+AGFGRKGHAVGD
Sbjct:    1 MGKPKGIRAARKLKTHRQAQRWNDKGYKKAHLGTRWKANPFGTASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKITAFVPNDGCLNFIEENDEVLVAGFGRKGHAVGD 114          

HSP 2 Score: 49.2914 bits (116), Expect = 1.739e-56
Identity = 22/30 (73.33%), Postives = 27/30 (90.00%), Query Frame = -3
Query:  241 EIPGVRFKVVKVSGVSLLALFKEKKEKPRS 330
            +IPGVRFK+VKV+  SL+ALFK KKE+PRS
Sbjct:  114 DIPGVRFKIVKVANTSLIALFKGKKERPRS 143          
The following BLAST results are available for this feature:
BLAST of CX672135 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 78
Match NameE-valueIdentityDescription
RS23_FRAAN3.065e-7198.2340S ribosomal protein S23 OS=Fragaria ananassa GN=... [more]
RS23_EUPES2.565e-7097.3540S ribosomal protein S23 OS=Euphorbia esula GN=RP... [more]
RS232_ARATH1.795e-6895.5840S ribosomal protein S23-2 OS=Arabidopsis thalian... [more]
RS231_ARATH8.053e-6692.9240S ribosomal protein S23-1 OS=Arabidopsis thalian... [more]
RS23_LUMRU1.468e-5880.7040S ribosomal protein S23 OS=Lumbricus rubellus GN... [more]
RS23_DERVA5.529e-5879.8240S ribosomal protein S23 OS=Dermacentor variabili... [more]
RS23_SPOFR4.616e-5777.1940S ribosomal protein S23 OS=Spodoptera frugiperda... [more]
RS23_PAPDA4.616e-5777.1940S ribosomal protein S23 OS=Papilio dardanus GN=R... [more]
RS23_DROME1.023e-5678.9540S ribosomal protein S23 OS=Drosophila melanogast... [more]
RS23_BRUMA1.739e-5678.9540S ribosomal protein S23 OS=Brugia malayi GN=rps-... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS10_15B11_b Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-15B11-D21-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX672135 ID=CX672135; Name=CX672135; organism=Citrus sinensis; type=EST; length=725bp
TCATAAGGAGATAGATCTTATACAGTAATGGTATTTTTCTAACAGAACAA
CGGCAGTCAACAAACCACTCAAGTAGAAGAGACAGATACTAATTTACTAA
TAGTCTCAACAGAGGGAAAAAAACCAAAAAGTTCTCTCAACAGCAGTACA
TGATAAAGGAAAACAGTAATCAACGGGGATTAATGAAAATAAAGTGCTAA
AAAAAGAAAACATGGTGAAGTATCTTGAATCAGGAGTTTAGGATCTTGGT
TTCTCCTTCTTCTCCTTGAAGAGGGCCAGAAGAGACACGCCTGAAACCTT
GACAACCTTAAATCTAACACCAGGAATCTCCCACAGCATGCCCCTTTCGA
CCAAATCCTGCAATAAGTACCTCGTCATTTTCTTCAATGTAGTTCAAACA
ACCATCGTTTGGTACGAAAGCTGCAATCTTCTTTCCATTCTTGATCAGCT
GAACTCGAGCACATTTTCTGATAGCGGAGTTGGGCTGCTTTGCCTCGATA
CCGATTTTCTCAAGAACAATGCCTTTTGCATGGGAAGAGCCAGCAAATGG
CTTCTTCCATTCATTGCCAAGGTGGGATTTCTTGTATGACTTATCAGCCC
ACCTTTGTCTTCTGCGGTGGCTCTTCAGCTTGCGACCCGCTCCCATTCCA
CGTGTCTTCCCCATGTTGGCGTTACGAAGAGGATTTTTGACTGTAACGAA
CGACTTTGGAGCTTGAGAGTTGCCT
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