CX672132

Overview
NameCX672132
Unique NameCX672132
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length629
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5102 contig Csv1_Contig5102:305..933. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX672132 vs. ExPASy Swiss-Prot
Match: PR1B4_ARATH (PRA1 family protein B4 OS=Arabidopsis thaliana GN=PRA1B4 PE=1 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 7.808e-23
Identity = 48/78 (61.54%), Postives = 58/78 (74.36%), Query Frame = 1
Query:   91 AWIFLYLFRPSDQPVVLFGRTFSDREXXXXXXXXXXXXXXXXXXGSLLISALMVGAAIVCAHGAFRVPEDLFLDEQEP 324
            +W+FLYLFRP+DQP+VLFGRTFSDRE                  GS+L+SA+M+G A++CAHGAFR PEDLFLDEQEP
Sbjct:  118 SWLFLYLFRPTDQPIVLFGRTFSDRETLGCLILFSIFVIFLTDVGSVLVSAMMIGVALICAHGAFRAPEDLFLDEQEP 195          
BLAST of CX672132 vs. ExPASy Swiss-Prot
Match: PR1B1_ARATH (PRA1 family protein B1 OS=Arabidopsis thaliana GN=PRA1B1 PE=1 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 7.808e-23
Identity = 52/81 (64.20%), Postives = 57/81 (70.37%), Query Frame = 1
Query:   88 GAWIFLYLFRPSDQPVVLFGRTFSDREXXXXXXXXXXXXXXXXXXGSLLISALMVGAAIVCAHGAFRVPEDLFLDEQEPIN 330
            G W+FLYLFRPSDQP+V+FGRTFSDRE                  GSLL SALM+G AIVC HGAF VP+DLFLDEQEP N
Sbjct:  107 GGWMFLYLFRPSDQPLVVFGRTFSDRETLLALVLSTIVVVFMTSVGSLLTSALMIGVAIVCVHGAFVVPDDLFLDEQEPAN 187          
BLAST of CX672132 vs. ExPASy Swiss-Prot
Match: PR1B3_ARATH (PRA1 family protein B3 OS=Arabidopsis thaliana GN=PRA1B3 PE=1 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 2.272e-22
Identity = 52/80 (65.00%), Postives = 56/80 (70.00%), Query Frame = 1
Query:   91 AWIFLYLFRPSDQPVVLFGRTFSDREXXXXXXXXXXXXXXXXXXGSLLISALMVGAAIVCAHGAFRVPEDLFLDEQEPIN 330
            AWIFLYLFRPSDQP+V+ GRTFSDRE                  GSLL SALM+G  IVC HGAFRVPEDLFLD+QEP N
Sbjct:  111 AWIFLYLFRPSDQPLVVLGRTFSDRETLGVLVILTIVVVFLTSVGSLLTSALMIGFGIVCLHGAFRVPEDLFLDDQEPAN 190          
BLAST of CX672132 vs. ExPASy Swiss-Prot
Match: PR1B2_ARATH (PRA1 family protein B2 OS=Arabidopsis thaliana GN=PRA1B2 PE=1 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 6.610e-22
Identity = 51/81 (62.96%), Postives = 57/81 (70.37%), Query Frame = 1
Query:   88 GAWIFLYLFRPSDQPVVLFGRTFSDREXXXXXXXXXXXXXXXXXXGSLLISALMVGAAIVCAHGAFRVPEDLFLDEQEPIN 330
            G+W+FLYLFR SDQP+VLFGR+FSDRE                  GSLL SAL +G AIVC HGAFRVP+DLFLDEQEP N
Sbjct:  109 GSWMFLYLFRSSDQPLVLFGRSFSDRETLLGLVLTTIVVVFMTSVGSLLTSALTIGIAIVCLHGAFRVPDDLFLDEQEPAN 189          
BLAST of CX672132 vs. ExPASy Swiss-Prot
Match: PR1B5_ARATH (PRA1 family protein B5 OS=Arabidopsis thaliana GN=PRA1B5 PE=1 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.524e-18
Identity = 42/77 (54.55%), Postives = 54/77 (70.13%), Query Frame = 1
Query:   91 AWIFLYLFRPSDQPVVLFGRTFSDREXXXXXXXXXXXXXXXXXXGSLLISALMVGAAIVCAHGAFRVPEDLFLDEQE 321
            +W+FLYLFRPSD+P++LFGR+FS+ E                  GS+LISALM+G A +C HGAFR P+DLFLDEQ+
Sbjct:  118 SWLFLYLFRPSDRPLILFGRSFSEYETLGGLILSTIAVIFFTSVGSVLISALMIGIATICVHGAFRAPDDLFLDEQD 194          
BLAST of CX672132 vs. ExPASy Swiss-Prot
Match: PR1B6_ARATH (PRA1 family protein B6 OS=Arabidopsis thaliana GN=PRA1B6 PE=1 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.577e-15
Identity = 42/79 (53.16%), Postives = 49/79 (62.03%), Query Frame = 1
Query:   91 AWIFLYLFRPSDQPVVLFGRTFSDREXXXXXXXXXXXXXXXXXXGSLLISALMVGAAIVCAHGAFRVPEDLFLDEQEPI 327
            +W+FLY FRP+DQP+V+ GRTFSD E                  GSLL+S L VG   V  HGAFR PEDLFL+EQE I
Sbjct:  108 SWLFLYFFRPADQPLVIGGRTFSDLETLGILCLSTVVVMFMTSVGSLLMSTLAVGIMGVAIHGAFRAPEDLFLEEQEAI 186          
The following BLAST results are available for this feature:
BLAST of CX672132 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
PR1B4_ARATH7.808e-2361.54PRA1 family protein B4 OS=Arabidopsis thaliana GN=... [more]
PR1B1_ARATH7.808e-2364.20PRA1 family protein B1 OS=Arabidopsis thaliana GN=... [more]
PR1B3_ARATH2.272e-2265.00PRA1 family protein B3 OS=Arabidopsis thaliana GN=... [more]
PR1B2_ARATH6.610e-2262.96PRA1 family protein B2 OS=Arabidopsis thaliana GN=... [more]
PR1B5_ARATH1.524e-1854.55PRA1 family protein B5 OS=Arabidopsis thaliana GN=... [more]
PR1B6_ARATH1.577e-1553.16PRA1 family protein B6 OS=Arabidopsis thaliana GN=... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS10_15B08_g Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-15B08-D15-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX672132 ID=CX672132; Name=CX672132; organism=Citrus sinensis; type=EST; length=629bp
GTCAATTATGTAACTTTACTCGGCCTCGTACTCGCATTCTCTCTCCTGTC
CCATCCTTTCTCTCTCCTCGTCCTGCTCTGCCTCCTAGGCGCTTGGATCT
TCCTCTACCTCTTCCGCCCTTCCGATCAACCCGTGGTCCTCTTTGGCCGT
ACGTTTTCCGATCGCGAAACGCTCGGCGCTCTTGTCGTTTTGACTATCGT
TGTCGTGTTCTTGACCAGCGTCGGATCCTTGTTGATCTCAGCGTTGATGG
TCGGAGCTGCGATCGTGTGTGCGCATGGTGCGTTTAGGGTTCCTGAGGAT
CTGTTTTTGGACGAGCAAGAGCCCATCAATTCCGGATTCCTGTCGTTCCT
CGGTGGCGCCGCATCCGCCGCTGCCCCCTCGGTTGCGGCACATGTCTGAA
ATGACTCGCTGGATCGTCAATGATCAAGCGTATGATTAATTCATGATTCT
TTTTAGGGAAAGGAATTAATTTAGGGTTTTTGTTTCCTACTCTTAAATGT
AACATTTTGGATCTTTATGTTTGATTTGTATGATTTCAATTTTGTTACAT
GCTACATGTTCAATATTTTTAGTGTAATCGCGAATTCAATGTGGATCGTT
CATTTTGTGGACCAAAAAAAAAAAAAAAA
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