CX672131

Overview
NameCX672131
Unique NameCX672131
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length633
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5102 contig Csv1_Contig5102:302..934. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX672131 vs. ExPASy Swiss-Prot
Match: PR1B4_ARATH (PRA1 family protein B4 OS=Arabidopsis thaliana GN=PRA1B4 PE=1 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 6.102e-23
Identity = 54/109 (49.54%), Postives = 66/109 (60.55%), Query Frame = -1
Query:  307 RVNYVTXXXXXXXXXXXXXXXXXXXXXXXLGAWIFLYLFRPSDQPVVLFGRTFSDREXXXXXXXXXXXXXXXXXVGSLLISALMVGAAIVCAHGAFRVPEDLFLDEQEP 633
            +VNY+T                       L +W+FLYLFRP+DQP+VLFGRTFSDRE                 VGS+L+SA+M+G A++CAHGAFR PEDLFLDEQEP
Sbjct:   87 KVNYLTVATAIVGFSLVTHPFSLVFLLCLLASWLFLYLFRPTDQPIVLFGRTFSDRETLGCLILFSIFVIFLTDVGSVLVSAMMIGVALICAHGAFRAPEDLFLDEQEP 195          
BLAST of CX672131 vs. ExPASy Swiss-Prot
Match: PR1B1_ARATH (PRA1 family protein B1 OS=Arabidopsis thaliana GN=PRA1B1 PE=1 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 7.969e-23
Identity = 53/81 (65.43%), Postives = 58/81 (71.60%), Query Frame = -1
Query:  301 GAWIFLYLFRPSDQPVVLFGRTFSDREXXXXXXXXXXXXXXXXXVGSLLISALMVGAAIVCAHGAFRVPEDLFLDEQEPIN 543
            G W+FLYLFRPSDQP+V+FGRTFSDRE                 VGSLL SALM+G AIVC HGAF VP+DLFLDEQEP N
Sbjct:  107 GGWMFLYLFRPSDQPLVVFGRTFSDRETLLALVLSTIVVVFMTSVGSLLTSALMIGVAIVCVHGAFVVPDDLFLDEQEPAN 187          
BLAST of CX672131 vs. ExPASy Swiss-Prot
Match: PR1B3_ARATH (PRA1 family protein B3 OS=Arabidopsis thaliana GN=PRA1B3 PE=1 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 1.775e-22
Identity = 58/111 (52.25%), Postives = 63/111 (56.76%), Query Frame = -1
Query:  301 RVNYVTXXXXXXXXXXXXXXXXXXXXXXXLGAWIFLYLFRPSDQPVVLFGRTFSDREXXXXXXXXXXXXXXXXXVGSLLISALMVGAAIVCAHGAFRVPEDLFLDEQEPIN 633
            +VNYVT                         AWIFLYLFRPSDQP+V+ GRTFSDRE                 VGSLL SALM+G  IVC HGAFRVPEDLFLD+QEP N
Sbjct:   80 KVNYVTIVSLVLALSLLSHPFSLLVLLCLFCAWIFLYLFRPSDQPLVVLGRTFSDRETLGVLVILTIVVVFLTSVGSLLTSALMIGFGIVCLHGAFRVPEDLFLDDQEPAN 190          
BLAST of CX672131 vs. ExPASy Swiss-Prot
Match: PR1B2_ARATH (PRA1 family protein B2 OS=Arabidopsis thaliana GN=PRA1B2 PE=1 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 6.746e-22
Identity = 52/81 (64.20%), Postives = 58/81 (71.60%), Query Frame = -1
Query:  301 GAWIFLYLFRPSDQPVVLFGRTFSDREXXXXXXXXXXXXXXXXXVGSLLISALMVGAAIVCAHGAFRVPEDLFLDEQEPIN 543
            G+W+FLYLFR SDQP+VLFGR+FSDRE                 VGSLL SAL +G AIVC HGAFRVP+DLFLDEQEP N
Sbjct:  109 GSWMFLYLFRSSDQPLVLFGRSFSDRETLLGLVLTTIVVVFMTSVGSLLTSALTIGIAIVCLHGAFRVPDDLFLDEQEPAN 189          
BLAST of CX672131 vs. ExPASy Swiss-Prot
Match: PR1B5_ARATH (PRA1 family protein B5 OS=Arabidopsis thaliana GN=PRA1B5 PE=1 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.191e-18
Identity = 48/108 (44.44%), Postives = 60/108 (55.56%), Query Frame = -1
Query:  310 RVNYVTXXXXXXXXXXXXXXXXXXXXXXXLGAWIFLYLFRPSDQPVVLFGRTFSDREXXXXXXXXXXXXXXXXXVGSLLISALMVGAAIVCAHGAFRVPEDLFLDEQE 633
            RVNYV                          +W+FLYLFRPSD+P++LFGR+FS+ E                 VGS+LISALM+G A +C HGAFR P+DLFLDEQ+
Sbjct:   87 RVNYVCIVALILGFSLLAHPFSLILLLCLAASWLFLYLFRPSDRPLILFGRSFSEYETLGGLILSTIAVIFFTSVGSVLISALMIGIATICVHGAFRAPDDLFLDEQD 194          
BLAST of CX672131 vs. ExPASy Swiss-Prot
Match: PR1B6_ARATH (PRA1 family protein B6 OS=Arabidopsis thaliana GN=PRA1B6 PE=1 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 9.435e-16
Identity = 47/110 (42.73%), Postives = 55/110 (50.00%), Query Frame = -1
Query:  304 RVNYVTXXXXXXXXXXXXXXXXXXXXXXXLGAWIFLYLFRPSDQPVVLFGRTFSDREXXXXXXXXXXXXXXXXXVGSLLISALMVGAAIVCAHGAFRVPEDLFLDEQEPI 633
            R NY+T                         +W+FLY FRP+DQP+V+ GRTFSD E                 VGSLL+S L VG   V  HGAFR PEDLFL+EQE I
Sbjct:   77 RANYITLVAILLAASLLTHPFALFLLASLAASWLFLYFFRPADQPLVIGGRTFSDLETLGILCLSTVVVMFMTSVGSLLMSTLAVGIMGVAIHGAFRAPEDLFLEEQEAI 186          
The following BLAST results are available for this feature:
BLAST of CX672131 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
PR1B4_ARATH6.102e-2349.54PRA1 family protein B4 OS=Arabidopsis thaliana GN=... [more]
PR1B1_ARATH7.969e-2365.43PRA1 family protein B1 OS=Arabidopsis thaliana GN=... [more]
PR1B3_ARATH1.775e-2252.25PRA1 family protein B3 OS=Arabidopsis thaliana GN=... [more]
PR1B2_ARATH6.746e-2264.20PRA1 family protein B2 OS=Arabidopsis thaliana GN=... [more]
PR1B5_ARATH1.191e-1844.44PRA1 family protein B5 OS=Arabidopsis thaliana GN=... [more]
PR1B6_ARATH9.435e-1642.73PRA1 family protein B6 OS=Arabidopsis thaliana GN=... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS10_15B08_b Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-15B08-D15-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX672131 ID=CX672131; Name=CX672131; organism=Citrus sinensis; type=EST; length=633bp
TTTTTTTTTTTTTTTTTGGTCCACAAAATGAACGATCCACATTGAATTCG
CGATTACACTAAAAATATTGAACATGTAGCATGTAACAAAATTGAAATCA
TACAAATCAAACATAAAGATCCAAAATGTTACATTTAAGAGTAGGAAACA
AAAACCCTAAATTAATTCCTTTCCCTAAAAAGAATCATGAATTAATCATA
CGCTTGATCATTGACGATCCAGCGAGTCATTTCAGACATGTGCCGCAACC
GAGGGGGCAGCGGCGGATGCGGCGCCACCGAGGAACGACAGGAATCCGGA
ATTGATGGGCTCTTGCTCGTCCAAAAACAGATCCTCAGGAACCCTAAACG
CACCATGCGCACACACGATCGCAGCTCCGACCATCAACGCTGAGATCAAC
AAGGATCCGACGCTGGTCAAGAACACGACAACGATAGTCAAAACGACAAG
AGCGCCGAGCGTTTCGCGATCGGAAAACGTACGGCCAAAGAGGACCACGG
GTTGATCGGAAGGGCGGAAGAGGTAGAGGAAGATCCAAGCGCCTAGGAGG
CAGAGCAGGACGAGGAGAGAGAAAGGATGGGACAGGAGAGAGAATGCGAG
TACGAGGCCGAGTAAAGTTACATAATTGACCCT
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