EY664660

Overview
NameEY664660
Unique NameEY664660
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length622
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7281 contig Csv1_Contig7281:1143..1764. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY664660 vs. ExPASy Swiss-Prot
Match: ACT3_SOYBN (Actin-3 OS=Glycine max GN=SAC3 PE=3 SV=2)

HSP 1 Score: 72.4034 bits (176), Expect = 2.087e-12
Identity = 33/35 (94.29%), Postives = 34/35 (97.14%), Query Frame = 1
Query:    7 VRGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 111
            + GSILASLSTFQQMWISKGEYDESGPSIVHRKCF
Sbjct:  342 IGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 376          
BLAST of EY664660 vs. ExPASy Swiss-Prot
Match: ACT3_ORYSJ (Actin-3 OS=Oryza sativa subsp. japonica GN=ACT3 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.087e-12
Identity = 33/35 (94.29%), Postives = 34/35 (97.14%), Query Frame = 1
Query:    7 VRGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 111
            + GSILASLSTFQQMWISKGEYDESGPSIVHRKCF
Sbjct:  343 IGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 377          
BLAST of EY664660 vs. ExPASy Swiss-Prot
Match: ACT3_ORYSI (Actin-3 OS=Oryza sativa subsp. indica GN=ACT3 PE=2 SV=2)

HSP 1 Score: 72.4034 bits (176), Expect = 2.087e-12
Identity = 33/35 (94.29%), Postives = 34/35 (97.14%), Query Frame = 1
Query:    7 VRGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 111
            + GSILASLSTFQQMWISKGEYDESGPSIVHRKCF
Sbjct:  343 IGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 377          
BLAST of EY664660 vs. ExPASy Swiss-Prot
Match: ACT2_DAUCA (Actin-2 OS=Daucus carota PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.087e-12
Identity = 33/35 (94.29%), Postives = 34/35 (97.14%), Query Frame = 1
Query:    7 VRGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 111
            + GSILASLSTFQQMWISKGEYDESGPSIVHRKCF
Sbjct:  347 IGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 381          
BLAST of EY664660 vs. ExPASy Swiss-Prot
Match: ACT13_SOLTU (Actin-101 OS=Solanum tuberosum GN=AC101 PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 4.650e-12
Identity = 32/35 (91.43%), Postives = 34/35 (97.14%), Query Frame = 1
Query:    7 VRGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 111
            + GSILASLSTFQQMWI+KGEYDESGPSIVHRKCF
Sbjct:  343 IGGSILASLSTFQQMWITKGEYDESGPSIVHRKCF 377          
BLAST of EY664660 vs. ExPASy Swiss-Prot
Match: ACT12_SOLTU (Actin-100 (Fragment) OS=Solanum tuberosum GN=AC100 PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 4.650e-12
Identity = 32/35 (91.43%), Postives = 34/35 (97.14%), Query Frame = 1
Query:    7 VRGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 111
            + GSILASLSTFQQMWI+KGEYDESGPSIVHRKCF
Sbjct:  323 IGGSILASLSTFQQMWITKGEYDESGPSIVHRKCF 357          
BLAST of EY664660 vs. ExPASy Swiss-Prot
Match: ACT_FUCVE (Actin OS=Fucus vesiculosus PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.036e-11
Identity = 32/35 (91.43%), Postives = 33/35 (94.29%), Query Frame = 1
Query:    7 VRGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 111
            + GSILASLSTFQQMWISK EYDESGPSIVHRKCF
Sbjct:  342 IGGSILASLSTFQQMWISKAEYDESGPSIVHRKCF 376          
BLAST of EY664660 vs. ExPASy Swiss-Prot
Match: ACT_FUCDI (Actin OS=Fucus distichus PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.036e-11
Identity = 32/35 (91.43%), Postives = 33/35 (94.29%), Query Frame = 1
Query:    7 VRGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 111
            + GSILASLSTFQQMWISK EYDESGPSIVHRKCF
Sbjct:  341 IGGSILASLSTFQQMWISKAEYDESGPSIVHRKCF 375          
BLAST of EY664660 vs. ExPASy Swiss-Prot
Match: ACT_COSCS (Actin (Fragment) OS=Costaria costata PE=3 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 1.036e-11
Identity = 32/35 (91.43%), Postives = 33/35 (94.29%), Query Frame = 1
Query:    7 VRGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 111
            + GSILASLSTFQQMWISK EYDESGPSIVHRKCF
Sbjct:  297 IGGSILASLSTFQQMWISKAEYDESGPSIVHRKCF 331          
BLAST of EY664660 vs. ExPASy Swiss-Prot
Match: ACT7_ARATH (Actin-7 OS=Arabidopsis thaliana GN=ACT7 PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.036e-11
Identity = 32/35 (91.43%), Postives = 33/35 (94.29%), Query Frame = 1
Query:    7 VRGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 111
            + GSILASLSTFQQMWISK EYDESGPSIVHRKCF
Sbjct:  343 IGGSILASLSTFQQMWISKSEYDESGPSIVHRKCF 377          
The following BLAST results are available for this feature:
BLAST of EY664660 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 246
Match NameE-valueIdentityDescription
ACT3_SOYBN2.087e-1294.29Actin-3 OS=Glycine max GN=SAC3 PE=3 SV=2[more]
ACT3_ORYSJ2.087e-1294.29Actin-3 OS=Oryza sativa subsp. japonica GN=ACT3 PE... [more]
ACT3_ORYSI2.087e-1294.29Actin-3 OS=Oryza sativa subsp. indica GN=ACT3 PE=2... [more]
ACT2_DAUCA2.087e-1294.29Actin-2 OS=Daucus carota PE=2 SV=1[more]
ACT13_SOLTU4.650e-1291.43Actin-101 OS=Solanum tuberosum GN=AC101 PE=3 SV=1[more]
ACT12_SOLTU4.650e-1291.43Actin-100 (Fragment) OS=Solanum tuberosum GN=AC100... [more]
ACT_FUCVE1.036e-1191.43Actin OS=Fucus vesiculosus PE=2 SV=1[more]
ACT_FUCDI1.036e-1191.43Actin OS=Fucus distichus PE=2 SV=1[more]
ACT_COSCS1.036e-1191.43Actin (Fragment) OS=Costaria costata PE=3 SV=2[more]
ACT7_ARATH1.036e-1191.43Actin-7 OS=Arabidopsis thaliana GN=ACT7 PE=1 SV=1[more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-069-A05-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY664660 ID=EY664660; Name=EY664660; organism=Citrus sinensis; type=EST; length=622bp
CCACGCGTCCGAGGATCAATCCTTGCATCCCTCAGCACCTTCCAGCAGAT
GTGGATCTCAAAGGGCGAGTATGATGAGTCTGGTCCATCCATTGTCCACA
GGAAATGCTTCTAAGTTCTTTAAGTGCTTGATGGGTGAGTTCTTTTTTTC
CATTTAGTTGGTTTTTTGTGTCTCGTTTCGCGAACTCAAGTTGGTTGACA
TGGAGAAGTGCTAAGGTTGGGGCCATTGAAGGAGGCATATCTCGATATTG
ATGTTATTATACAAGCTTCTTACAGCGTTTGAGGGGGGCTTATTTCTGTA
CTCAACCGTCTTCCTTGCCTTGCATTCATCTGGTGTTCAACCAAGTCTTT
TTTCTTTTTTTTCCTTTTTTTTTTTTAAAGTAGGATGTTTGTAGCTGGAG
ATGAAGAGTGGTTGTGATGCTTTTCTATTTCATTTTCTAAATTTTCATAT
TTGAAGGTTTTTTTTCTCCCCCTCTCAAAAGGAACATTAATGTTAATAGC
TATTGTATGAGAAAACTTTAATTAGTGTCAGCTTGCAGTCATAAATTTGG
TTATTAAAATATATTTAATACTTGTTTGAGAGCTTTCAATGATGAATCAA
TGTCTTATTTCANNNAAAAAAA
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