CX672118

Overview
NameCX672118
Unique NameCX672118
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length789
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX672118_ssr14 microsatellite CX672118_ssr14:14..25. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig2264 contig Csv1_Contig2264:37..826. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX672118 vs. ExPASy Swiss-Prot
Match: UBC2_MEDSA (Ubiquitin-conjugating enzyme E2 2 OS=Medicago sativa GN=UBC2 PE=2 SV=1)

HSP 1 Score: 312.768 bits (800), Expect = 1.402e-84
Identity = 147/152 (96.71%), Postives = 151/152 (99.34%), Query Frame = 3 
Query:  171 MSTPARKRLMRDFKRLQQDPPAGISGAPQDNSIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVREIVEQSWTAD 626
            MSTPARKRLMRDFKRLQ DPPAGISGAPQDN+IMLWNAVIFGPDDTPWDGGTFKL+LQF+EDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVRE+VEQSWTAD
Sbjct:    1 MSTPARKRLMRDFKRLQHDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLSLQFSEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVREVVEQSWTAD 152
[Close]
BLAST of CX672118 vs. ExPASy Swiss-Prot
Match: UBC2_ARATH (Ubiquitin-conjugating enzyme E2 2 OS=Arabidopsis thaliana GN=UBC2 PE=2 SV=1)

HSP 1 Score: 312.768 bits (800), Expect = 1.402e-84
Identity = 147/152 (96.71%), Postives = 152/152 (100.00%), Query Frame = 3 
Query:  171 MSTPARKRLMRDFKRLQQDPPAGISGAPQDNSIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVREIVEQSWTAD 626
            MSTPARKRLMRDFKRLQQDPPAGISGAPQDN+IMLWNAVIFGPDDTPWDGGTFKL+LQF+EDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSE+KREYNRRVRE+VEQSWTAD
Sbjct:    1 MSTPARKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLSLQFSEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSESKREYNRRVREVVEQSWTAD 152
[Close]
BLAST of CX672118 vs. ExPASy Swiss-Prot
Match: UBC2_WHEAT (Ubiquitin-conjugating enzyme E2 2 OS=Triticum aestivum GN=UBC2 PE=1 SV=1)

HSP 1 Score: 311.227 bits (796), Expect = 4.080e-84
Identity = 146/152 (96.05%), Postives = 150/152 (98.68%), Query Frame = 3 
Query:  171 MSTPARKRLMRDFKRLQQDPPAGISGAPQDNSIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVREIVEQSWTAD 626
            MSTPARKRLMRDFKRLQQDPPAGISGAP DN+I LWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARM+SENKREYNR+VRE+VEQSWTAD
Sbjct:    1 MSTPARKRLMRDFKRLQQDPPAGISGAPHDNNITLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMYSENKREYNRKVREVVEQSWTAD 152
[Close]
BLAST of CX672118 vs. ExPASy Swiss-Prot
Match: UBC1_ARATH (Ubiquitin-conjugating enzyme E2 1 OS=Arabidopsis thaliana GN=UBC1 PE=1 SV=1)

HSP 1 Score: 310.457 bits (794), Expect = 6.959e-84
Identity = 145/152 (95.39%), Postives = 152/152 (100.00%), Query Frame = 3 
Query:  171 MSTPARKRLMRDFKRLQQDPPAGISGAPQDNSIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVREIVEQSWTAD 626
            MSTPARKRLMRDFKRLQQDPPAGISGAPQDN+IMLWNAVIFGPDDTPWDGGTFKL+LQF+EDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARM+SE+KREYNRRVR++VEQSWTAD
Sbjct:    1 MSTPARKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLSLQFSEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMYSESKREYNRRVRDVVEQSWTAD 152
[Close]
BLAST of CX672118 vs. ExPASy Swiss-Prot
Match: UBC3_ARATH (Ubiquitin-conjugating enzyme E2 3 OS=Arabidopsis thaliana GN=UBC3 PE=2 SV=1)

HSP 1 Score: 281.952 bits (720), Expect = 2.650e-75
Identity = 131/149 (87.92%), Postives = 143/149 (95.97%), Query Frame = 3 
Query:  171 MSTPARKRLMRDFKRLQQDPPAGISGAPQDNSIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVREIVEQSW 617
            M+TPA+KRLM DFKRLQ+DPP GISGAPQDN+IM WNA+IFGP+DTPWDGGTFKLTL FTEDYPNKPP VRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAA+LTSIQSLLCDPNP+SPAN+EAAR+FSENKREYNR+V EIVEQS+
Sbjct:    1 MTTPAKKRLMWDFKRLQKDPPVGISGAPQDNNIMHWNALIFGPEDTPWDGGTFKLTLHFTEDYPNKPPIVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAVLTSIQSLLCDPNPDSPANAEAARLFSENKREYNRKVIEIVEQSY 149
[Close]
BLAST of CX672118 vs. ExPASy Swiss-Prot
Match: UBC2_DICDI (Ubiquitin-conjugating enzyme E2 2 OS=Dictyostelium discoideum GN=ubc2 PE=3 SV=2)

HSP 1 Score: 268.47 bits (685), Expect = 3.032e-71
Identity = 121/151 (80.13%), Postives = 142/151 (94.04%), Query Frame = 3 
Query:  171 MSTPARKRLMRDFKRLQQDPPAGISGAPQDNSIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVREIVEQSWTA 623
            MST AR+RLMRDFKRLQ DPPAGISGAP +N+I++W AVIFGPDD+ W+G TFKL+LQF+E+YPN  PTV+F+S+MFHPN+YADGSICLDILQNQWSPIYD+AAILTSIQSLLCDPNPNSPANSE+AR+F ENKREYNR+V+EIVEQSW++
Sbjct:    1 MSTAARRRLMRDFKRLQSDPPAGISGAPLENNILMWQAVIFGPDDSIWEGATFKLSLQFSEEYPNDAPTVKFLSKMFHPNVYADGSICLDILQNQWSPIYDIAAILTSIQSLLCDPNPNSPANSESARLFRENKREYNRKVKEIVEQSWSS 151
[Close]
BLAST of CX672118 vs. ExPASy Swiss-Prot
Match: UBE2A_MOUSE (Ubiquitin-conjugating enzyme E2 A OS=Mus musculus GN=Ube2a PE=2 SV=1)

HSP 1 Score: 261.151 bits (666), Expect = 4.841e-69
Identity = 117/149 (78.52%), Postives = 140/149 (93.96%), Query Frame = 3 
Query:  171 MSTPARKRLMRDFKRLQQDPPAGISGAPQDNSIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVREIVEQSW 617
            MSTPAR+RLMRDFKRLQ+DPPAG+SGAP +N+IM+WNAVIFGP+ TP++ GTFKLT++FTE+YPNKPPTVRFVS+MFHPN+YADGSICLDILQN+WSP YDV++ILTSIQSLL +PNPNSPANS+AA+++ ENKREY +RV  IVEQSW
Sbjct:    1 MSTPARRRLMRDFKRLQEDPPAGVSGAPSENNIMVWNAVIFGPEGTPFEDGTFKLTIEFTEEYPNKPPTVRFVSKMFHPNVYADGSICLDILQNRWSPTYDVSSILTSIQSLLDEPNPNSPANSQAAQLYQENKREYEKRVSAIVEQSW 149
[Close]
BLAST of CX672118 vs. ExPASy Swiss-Prot
Match: UBE2A_HUMAN (Ubiquitin-conjugating enzyme E2 A OS=Homo sapiens GN=UBE2A PE=2 SV=2)

HSP 1 Score: 261.151 bits (666), Expect = 4.841e-69
Identity = 117/149 (78.52%), Postives = 140/149 (93.96%), Query Frame = 3 
Query:  171 MSTPARKRLMRDFKRLQQDPPAGISGAPQDNSIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVREIVEQSW 617
            MSTPAR+RLMRDFKRLQ+DPPAG+SGAP +N+IM+WNAVIFGP+ TP++ GTFKLT++FTE+YPNKPPTVRFVS+MFHPN+YADGSICLDILQN+WSP YDV++ILTSIQSLL +PNPNSPANS+AA+++ ENKREY +RV  IVEQSW
Sbjct:    1 MSTPARRRLMRDFKRLQEDPPAGVSGAPSENNIMVWNAVIFGPEGTPFEDGTFKLTIEFTEEYPNKPPTVRFVSKMFHPNVYADGSICLDILQNRWSPTYDVSSILTSIQSLLDEPNPNSPANSQAAQLYQENKREYEKRVSAIVEQSW 149
[Close]
BLAST of CX672118 vs. ExPASy Swiss-Prot
Match: UBCD6_DROME (Ubiquitin-conjugating enzyme E2-17 kDa OS=Drosophila melanogaster GN=UbcD6 PE=2 SV=2)

HSP 1 Score: 256.144 bits (653), Expect = 1.557e-67
Identity = 115/149 (77.18%), Postives = 137/149 (91.95%), Query Frame = 3 
Query:  171 MSTPARKRLMRDFKRLQQDPPAGISGAPQDNSIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVREIVEQSW 617
            MSTPAR+RLMRDFKRLQ+DPP G+SGAP DN+IM+WNAVIFGP DTP++ GTFKLT++FTE+YPNKPPTVRFVS++FHPN+YADG ICLDILQN+WSP YDV+AILTSIQSLL DPNPNSPANS AA+++ EN+REY +RV+  VEQS+
Sbjct:    1 MSTPARRRLMRDFKRLQEDPPTGVSGAPTDNNIMIWNAVIFGPHDTPFEDGTFKLTIEFTEEYPNKPPTVRFVSKVFHPNVYADGGICLDILQNRWSPTYDVSAILTSIQSLLSDPNPNSPANSTAAQLYKENRREYEKRVKACVEQSF 149
[Close]
BLAST of CX672118 vs. ExPASy Swiss-Prot
Match: UBE2B_RAT (Ubiquitin-conjugating enzyme E2 B OS=Rattus norvegicus GN=Ube2b PE=2 SV=1)

HSP 1 Score: 253.832 bits (647), Expect = 7.729e-67
Identity = 113/149 (75.84%), Postives = 137/149 (91.95%), Query Frame = 3 
Query:  171 MSTPARKRLMRDFKRLQQDPPAGISGAPQDNSIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVREIVEQSW 617
            MSTPAR+RLMRDFKRLQ+DPP G+SGAP +N+IM WNAVIFGP+ TP++ GTFKL ++F+E+YPNKPPTVRF+S+MFHPN+YADGSICLDILQN+WSP YDV++ILTSIQSLL +PNPNSPANS+AA+++ ENKREY +RV  IVEQSW
Sbjct:    1 MSTPARRRLMRDFKRLQEDPPVGVSGAPSENNIMQWNAVIFGPEGTPFEDGTFKLVIEFSEEYPNKPPTVRFLSKMFHPNVYADGSICLDILQNRWSPTYDVSSILTSIQSLLDEPNPNSPANSQAAQLYQENKREYEKRVSAIVEQSW 149
The following BLAST results are available for this feature:
BLAST of CX672118 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 254
Match NameE-valueIdentityDescription
UBC2_MEDSA1.402e-8496.71Ubiquitin-conjugating enzyme E2 2 OS=Medicago sati... [more]
UBC2_ARATH1.402e-8496.71Ubiquitin-conjugating enzyme E2 2 OS=Arabidopsis t... [more]
UBC2_WHEAT4.080e-8496.05Ubiquitin-conjugating enzyme E2 2 OS=Triticum aest... [more]
UBC1_ARATH6.959e-8495.39Ubiquitin-conjugating enzyme E2 1 OS=Arabidopsis t... [more]
UBC3_ARATH2.650e-7587.92Ubiquitin-conjugating enzyme E2 3 OS=Arabidopsis t... [more]
UBC2_DICDI3.032e-7180.13Ubiquitin-conjugating enzyme E2 2 OS=Dictyostelium... [more]
UBE2A_MOUSE4.841e-6978.52Ubiquitin-conjugating enzyme E2 A OS=Mus musculus ... [more]
UBE2A_HUMAN4.841e-6978.52Ubiquitin-conjugating enzyme E2 A OS=Homo sapiens ... [more]
UBCD6_DROME1.557e-6777.18Ubiquitin-conjugating enzyme E2-17 kDa OS=Drosophi... [more]
UBE2B_RAT7.729e-6775.84Ubiquitin-conjugating enzyme E2 B OS=Rattus norveg... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS10_15B01_g Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-15B01-D1-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX672118 ID=CX672118; Name=CX672118; organism=Citrus sinensis; type=EST; length=789bp
CTGACCTGAACGACTCTCTCTCTCTTGTTTCTCTGATCAAATTGAGTACC
ATGGAATTCTTTCTCTGATACCGCCCGCTTTTCGATTGTTTCCCGAGAAA
ATCTCGCTGCGATTCTGAAGCTTTTACTGCAATCAACGCTACTTGCCGCG
TCAGCTCGTAGGCAGTGAGAATGTCGACTCCTGCAAGGAAGAGATTGATG
AGGGATTTTAAGAGGTTACAACAAGATCCTCCGGCTGGCATTAGTGGTGC
TCCTCAGGACAACAGTATAATGCTTTGGAATGCTGTTATATTCGGGCCGG
ATGATACCCCATGGGATGGAGGTACGTTTAAATTGACACTTCAGTTCACA
GAGGATTATCCAAATAAGCCACCAACAGTGCGCTTTGTTTCTCGAATGTT
CCATCCAAATATTTATGCGGATGGAAGCATTTGCTTGGACATTCTACAAA
ATCAGTGGAGTCCAATTTACGATGTAGCAGCAATACTCACGTCAATTCAG
TCATTGCTTTGTGACCCAAATCCAAACTCTCCTGCAAATTCGGAGGCAGC
GCGGATGTTTAGCGAGAACAAGCGTGAATACAATAGGAGAGTACGGGAAA
TTGTTGAGCAGAGTTGGACTGCTGACTAGTGGCAACTTGTTGGAATGTAG
GGAACTTCAAAAGTAGTCCAATGGCTTGTTCTAAATAACATTTAAGATTC
AAAAGGTTGGTGGTGTGAACTCTTGACATGTTTTATGTTTGTTTCGGCTT
ATGAGGATGGATGGTTGGCCTCTTATTGTTAATTTCTCG
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