EY664646

Overview
NameEY664646
Unique NameEY664646
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length537
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1389 contig Csv1_Contig1389:220..756. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of EY664646 vs. ExPASy Swiss-Prot
Match: PST2_ARATH (Photosystem II 5 kDa protein, chloroplastic OS=Arabidopsis thaliana GN=PSBT PE=2 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 9.909e-12
Identity = 42/96 (43.75%), Postives = 55/96 (57.29%), Query Frame = 1 
Query:   79 SMAKNPAATRAKRGGLIVVAKAASSKAENVSMEFKNKDDSSSNGRRELVFXXXXXXXXXXXXXXXXESEEPKRGTPDAKKKYAPVCVTMPTARICR 366
            ++AK P+AT  +R  L VV  + S    ++ +    K+ SS+  RR+L+F                E EEPKRGT  AKKKYA VCVTMPTA+ICR
Sbjct:   13 AVAKVPSATGGRR--LSVVRASTSDNTPSLEV----KEQSSTTMRRDLMFTAAAAAVCSLAKVAMAEEEEPKRGTEAAKKKYAQVCVTMPTAKICR 102
The following BLAST results are available for this feature:
BLAST of EY664646 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
PST2_ARATH9.909e-1243.75Photosystem II 5 kDa protein, chloroplastic OS=Ara... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C1-101-068-H01-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY664646 ID=EY664646; Name=EY664646; organism=Citrus sinensis; type=EST; length=537bp
CCACGCGTCCGACTTGCAACAAAGTCAGCAGCAAACATGGCTTCGATGAC
CATGGCAGCAGCCTCATTACTGCCCACAAGCATGGCCAAAAACCCAGCAG
CAACAAGAGCGAAGAGAGGAGGCCTCATCGTTGTGGCCAAGGCTGCATCA
TCAAAAGCTGAAAATGTGAGCATGGAATTCAAGAACAAGGATGATAGCAG
CAGCAACGGAAGAAGGGAGCTTGTGTTTGCAGCAGCAGCTGCAGCAGCTT
GCTCCATTGCAAAAGTTGCAATGGCTGAATCTGAGGAGCCCAAACGAGGG
ACCCCAGATGCTAAGAAGAAGTATGCTCCTGTTTGTGTCACAATGCCTAC
TGCTAGAATCTGTCGCAAGTGAGAATGTTTTTTAATTTTCATGCTGTTGA
TGTTAATTAGTGTCCAATTAATTGATATGAGATCAATGTTAAAAGCTGTG
AGCATCTGTATCTTGTAATTGGAGAATCCTGTTTATTTTATCTTGTCTTT
GTTACCCTTCCCTCCAAAAAAAANNAAAAAAAANANA
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