EY664641

Overview
NameEY664641
Unique NameEY664641
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length879
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY664641_ssr454 microsatellite EY664641_ssr454:454..465. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of EY664641 vs. ExPASy Swiss-Prot
Match: UBAX1_ARATH (UBA and UBX domain-containing protein At4g15410 OS=Arabidopsis thaliana GN=At4g15410 PE=2 SV=1)

HSP 1 Score: 182.57 bits (462), Expect = 2.624e-45
Identity = 115/261 (44.06%), Postives = 141/261 (54.02%), Query Frame = 1
Query:   34 EANSSLINSFVEITSSTKDEALFFLESHQWNLDAAVSTFLDNXXXXXXXXXXXXXV--ATLPAVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDPYELRSRSRRGKKEDKKAATG--TSR-----GGIRTLADLNRTPPGGAXXXXXXXEPQQYYTGGEKSGMLVQDPTKGNQVDEIFNQARQSAVERPDLRAPSSSKAFTGTARLLSGETV----XXXXXXXXXNVSHNITFWENGFTVXDGPLXEMDDPANASFL 777
            E N +LINSF+EITSS+++EA FFLESH WNLDAAVSTFLDN                ++  A                                   PY LRSR   G+ ++ +  +G  +SR     G IRT ADLNR+P  G        E  +YYTGG+KSGM+VQDP K   VDE+F+QARQSAV+RP   + S+S +FTG ARLLSGE V              + H ITFW NGFTV DGPL    DP NA+F+
Sbjct:    4 ETNENLINSFIEITSSSREEANFFLESHTWNLDAAVSTFLDNDAAAAAEPNPTGPPPPSSTIAGAQSPSQSHSPDYTPSETSPSPSRSRSASPSSRAAPYGLRSRGGAGENKETENPSGIRSSRSRQHAGNIRTFADLNRSPADGEGSDSD--EANEYYTGGQKSGMMVQDPKKVKDVDELFDQARQSAVDRPVEPSRSASTSFTGAARLLSGEAVSSSPQQQQQEQPQRIMHTITFWLNGFTVNDGPLRGFSDPENAAFM 262          
BLAST of EY664641 vs. ExPASy Swiss-Prot
Match: NSF1C_DICDI (NSFL1 cofactor p47 homolog OS=Dictyostelium discoideum GN=nsfl1c PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 5.522e-11
Identity = 50/161 (31.06%), Postives = 71/161 (44.10%), Query Frame = 1
Query:  355 KKEDKKAATGTSRGGIRTLADLNRTPPGGAXXXXXXXEP----QQYYTGGEKSGMLVQDPTK-------GNQVDEIFNQAR--------QSAVERPDLRAPSSSKAFTGTARLLSGETVXXXXXXXXXNVSHNITFWENGFTVXDGPLXEMDDPANASFLE 780
            K   KKA  G   GGIRTL+D N              +     QQY+TGGEKSG++V+   K       G+ V+++F+ A+        +  VE+PD    S       T +     +           V   +TFW  GFT+ DGPL + D+P N   L+
Sbjct:   86 KTVSKKAPAGGRVGGIRTLSDFNNDDHDDHDHSDGDDDEDDRSQQYFTGGEKSGLVVESAPKKGKNGGSGDIVNDVFDSAKRHGAVASNEKKVEKPD-SFDSVGYQLGATDQGNRNVSKPKEKDPNSQVVEVKVTFWNQGFTIDDGPLRKYDNPENKELLD 245          
The following BLAST results are available for this feature:
BLAST of EY664641 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
UBAX1_ARATH2.624e-4544.06UBA and UBX domain-containing protein At4g15410 OS... [more]
NSF1C_DICDI5.522e-1131.06NSFL1 cofactor p47 homolog OS=Dictyostelium discoi... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C1-101-068-G08-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY664641 ID=EY664641; Name=EY664641; organism=Citrus sinensis; type=EST; length=879bp
AAACGAATCGGATCAATGGAGAACCCAACAGCAGAAGCTAACTCTTCTTT
AATCAATTCTTTCGTGGAGATCACATCATCCACCAAAGACGAAGCTCTCT
TCTTCTTGGAGTCTCATCAGTGGAATCTAGACGCCGCCGTTTCGACTTTT
CTAGACAACGCCGCAGCGGCCACCGCCTCCCCCGAAGCATCTCAATCGGT
CGCTACTCTCCCTGCCGTTAACTCCCCGTCGCTTTCAAACTCCCCCTCGA
CCTCTCCGTCTGCGTCTTTGTCTCGTTCCCCGTCCCGGTCTCGGTCGCCA
TCACCTGCTGCGGCTCGCGATCCGTACGAGCTGCGTTCCCGAAGCCGACG
GGGGAAGAAGGAGGATAAGAAGGCGGCGACTGGGACATCACGTGGGGGCA
TTCGGACTCTTGCTGATCTGAATAGGACTCCTCCTGGTGGGGCCGATAGC
GATGACGACGACGACGAGCCGCAGCAGTATTATACTGGTGGTGAGAAGAG
CGGGATGCTGGTCCAAGATCCTACCAAAGGAAATCAAGTGGATGAAATTT
TCAATCAAGCTAGACAATCAGCTGTAGAAAGGCCTGACCTTCGAGCACCA
TCAAGCTCAAAAGCCTTCACTGGAACAGCAAGGTTACTCTCTGGAGAGAC
AGTATCATCTGCTCCAGCTCCTCCGCCCTGAAATGTCTCACACAACATCA
CTTTTTGGGAGAATGGGTTCACTGTANATGATGGTCCATTGCNNGAGATG
GATGATCCTGCAAATGCTTCCTTTTTGGAGTAGTATTTGACAATATATTT
CCTTNACTTNATGATTTGCTATATTGGCACTGGGAAATTGCTGTGCTTGN
TAGTTGTATACAAGAGTGAGTTGCACCTG
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