CX672065

Overview
NameCX672065
Unique NameCX672065
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length788
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CX672065 vs. ExPASy Swiss-Prot
Match: UMP1_ARATH (Uncharacterized protein At3g15000, mitochondrial OS=Arabidopsis thaliana GN=At3g15000 PE=1 SV=1)

HSP 1 Score: 172.17 bits (435), Expect = 2.958e-42
Identity = 79/130 (60.77%), Postives = 104/130 (80.00%), Query Frame = 3 
Query:   39 SPLNDPSPNWSNRPPKETIMLDGCDYQHWLIVMEFPNPSGLSEEEMINAYVKTLAAVVGSEEEAKKKIYSVCTTTYTGFGALIDEELSYKVKGQPGVLWVLPDSYIDVPNKDYGGDLFVDGKVI-HRPQY 425
            S LNDP+PNWSNRPPKETI+LDGCD++HWL+V+E P     + +E+I++Y+KTLA +VGSE+EA+ KIYSV T  Y  FGAL+ E+LS+K+K    V WVLPDSY+DV NKDYGG+ F+DGK + + P+Y
Sbjct:   72 SSLNDPNPNWSNRPPKETILLDGCDFEHWLVVVEPPQGEP-TRDEIIDSYIKTLAQIVGSEDEARMKIYSVSTRCYYAFGALVSEDLSHKLKELSNVRWVLPDSYLDVRNKDYGGEPFIDGKAVPYDPKY 200
[Close]
BLAST of CX672065 vs. ExPASy Swiss-Prot
Match: DAG_ANTMA (DAG protein, chloroplastic OS=Antirrhinum majus GN=DAG PE=2 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 1.089e-36
Identity = 77/133 (57.89%), Postives = 92/133 (69.17%), Query Frame = 3 
Query:   12 RFKTSGSSYSPLNDPSPNWSNRPPKETIMLDGCDYQHWLIVMEFPNPSGLSEEEMINAYVKTLAAVVGSEEEAKKKIYSVCTTTYTGFGALIDEELSYKVKGQPGVLWVLPDSYIDVPNKDYGGDLFVDGKVI 410
            R  T G   S  N+ + N      +ETIML GCDY HWLIVMEFP     + E+MI+ Y+ TLA V+GS EEAKK +Y+  TTTYTGF   + EE S K KG PGVLWVLPDSYIDV NKDYGGD +V+G++I
Sbjct:   54 RALTDGEYSSRRNNNNNNSGEE--RETIMLPGCDYNHWLIVMEFPKDPAPTREQMIDTYLNTLATVLGSMEEAKKNMYAFSTTTYTGFQCTVTEETSEKFKGLPGVLWVLPDSYIDVKNKDYGGDKYVNGEII 184
The following BLAST results are available for this feature:
BLAST of CX672065 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
UMP1_ARATH2.958e-4260.77Uncharacterized protein At3g15000, mitochondrial O... [more]
DAG_ANTMA1.089e-3657.89DAG protein, chloroplastic OS=Antirrhinum majus GN... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS10_14G02_g Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-14G02-M4-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX672065 ID=CX672065; Name=CX672065; organism=Citrus sinensis; type=EST; length=788bp
GCAACCCGGCCCGTTTCAAAACATCCGGTTCGAGCTACTCGCCCCTCAAC
GACCCGTCTCCGAATTGGAGCAACCGGCCGCCGAAAGAGACAATAATGCT
CGACGGGTGCGATTACCAGCATTGGCTGATTGTTATGGAGTTTCCTAATC
CCTCAGGGCTCAGTGAGGAGGAAATGATCAACGCTTATGTCAAAACACTC
GCTGCTGTTGTTGGCAGTGAGGAGGAAGCGAAGAAGAAGATATACTCAGT
CTGTACGACGACATATACTGGGTTTGGTGCACTTATTGATGAGGAGCTTT
CTTACAAAGTTAAAGGTCAGCCTGGAGTTCTTTGGGTTTTGCCGGATTCA
TATATTGATGTTCCCAACAAAGATTATGGAGGGGATTTGTTTGTTGATGG
CAAAGTTATCCATAGACCACAATATAGATTCACTGAGAGGCAGCAAAGGC
CACGCACACGGCGTCGAGAAACAACACAGGCCGACAGGAGAAGGCTCTGG
GCTCAGAACCAGAGTGCTCCATCGCAGCAACCAACCTCAATGAGTAACCA
GAATCCTGCTCAAGCTGGTGGGACAAATTTCTCTATAAACCAAGGACAAA
ATAACCAGAAGAGTGCTTGAGAATTCACAGTATAGTTATGGGGCTATTGG
GTTTGTGTTGTCAGTGGCATTTCTTATTCGGTGGATAATTACTGAGTTCC
CTTGCTTTTTATGTTCCATGGCAATTATATGCATATTTCAAGTCATGAAC
ATATGTGAATATAGTTATTGAGGAATTATTGAAAATCA
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