CX672059

Overview
NameCX672059
Unique NameCX672059
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length831
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX672059 vs. ExPASy Swiss-Prot
Match: AP1M_DICDI (AP-1 complex subunit mu OS=Dictyostelium discoideum GN=apm1 PE=1 SV=1)

HSP 1 Score: 271.166 bits (692), Expect = 5.156e-72
Identity = 130/238 (54.62%), Postives = 189/238 (79.41%), Query Frame = 1
Query:  133 AASALFLLDIKGRVLIWRDYRGDVSAIQAERFFTKFIEKEGDPQSQNPVVFDNGVTYMFIQHNNVYLMAASRQNCNAASILLFLHRVADVFKHYFEELEEESLRDNFVVVYELLDEIMDFGFPQFTEAKILSEFIKTDAYRMEVTQRP---PMAVTNAVSWRSEGIRYKKNEVFLDVVESVNILVNSNGQIVRSDVVGALKMRTYLSGMPECKLGLNDRVLLE--AQGRSTKGKSIDL 831
            AASA+FL+D KG+VLI R+YRGDV    A +F +K +E+E    +  P++ ++G++Y++++HNN++L+A + +N NAA+ILLFL+++ +VF  YF+ELEEES+RDNFVV+YEL+DE+MDFG+PQ TE KIL E+I  + Y++E   R    P A+T AVSWR EGI+Y KNEVFLDVVES+N+LV++NG ++RS++VGA+KM++ LSGMPE +LGLND++L E  A+  + KGK ++L
Sbjct:    2 AASAIFLMDSKGKVLISRNYRGDVPMSVASKFISKILEEED--LNLKPIIQEDGISYIYVKHNNLFLLATTERNANAATILLFLYKMIEVFNEYFKELEEESIRDNFVVIYELMDEMMDFGYPQSTEPKILQEYITQEGYKLERGARGMVLPAAITGAVSWRKEGIKYNKNEVFLDVVESINLLVSANGTVLRSEIVGAVKMKSKLSGMPELRLGLNDKILFENSAKTGAPKGKGVEL 237          
BLAST of CX672059 vs. ExPASy Swiss-Prot
Match: AP1M1_HUMAN (AP-1 complex subunit mu-1 OS=Homo sapiens GN=AP1M1 PE=1 SV=3)

HSP 1 Score: 271.166 bits (692), Expect = 5.156e-72
Identity = 129/234 (55.13%), Postives = 184/234 (78.63%), Query Frame = 1
Query:  133 AASALFLLDIKGRVLIWRDYRGDVSAIQAERFFTKFIEKEGDPQSQNPVVFDNGVTYMFIQHNNVYLMAASRQNCNAASILLFLHRVADVFKHYFEELEEESLRDNFVVVYELLDEIMDFGFPQFTEAKILSEFIKTDAYRMEV-TQRPPMAVTNAVSWRSEGIRYKKNEVFLDVVESVNILVNSNGQIVRSDVVGALKMRTYLSGMPECKLGLNDRVLLEAQGRSTKGKSIDL 831
            +ASA+++LD+KG+VLI R+YRGDV   + E F    +EKE +    +P++   GV +M+I+HNN+YL+A S++N   + +  FL++V  VF  YF+ELEEES+RDNFV++YELLDE+MDFG+PQ T++KIL E+I  + +++E    RPP  VTNAVSWRSEGI+Y+KNEVFLDV+ESVN+LV++NG ++RS++VG++KMR +LSGMPE +LGLND+VL +  GR  K KS++L
Sbjct:    2 SASAVYVLDLKGKVLICRNYRGDVDMSEVEHFMPILMEKEEEGML-SPILAHGGVRFMWIKHNNLYLVATSKKNACVSLVFSFLYKVVQVFSEYFKELEEESIRDNFVIIYELLDELMDFGYPQTTDSKILQEYITQEGHKLETGAPRPPATVTNAVSWRSEGIKYRKNEVFLDVIESVNLLVSANGNVLRSEIVGSIKMRVFLSGMPELRLGLNDKVLFDNTGRG-KSKSVEL 233          
BLAST of CX672059 vs. ExPASy Swiss-Prot
Match: AP1M1_BOVIN (AP-1 complex subunit mu-1 OS=Bos taurus GN=AP1M1 PE=1 SV=3)

HSP 1 Score: 271.166 bits (692), Expect = 5.156e-72
Identity = 129/234 (55.13%), Postives = 184/234 (78.63%), Query Frame = 1
Query:  133 AASALFLLDIKGRVLIWRDYRGDVSAIQAERFFTKFIEKEGDPQSQNPVVFDNGVTYMFIQHNNVYLMAASRQNCNAASILLFLHRVADVFKHYFEELEEESLRDNFVVVYELLDEIMDFGFPQFTEAKILSEFIKTDAYRMEV-TQRPPMAVTNAVSWRSEGIRYKKNEVFLDVVESVNILVNSNGQIVRSDVVGALKMRTYLSGMPECKLGLNDRVLLEAQGRSTKGKSIDL 831
            +ASA+++LD+KG+VLI R+YRGDV   + E F    +EKE +    +P++   GV +M+I+HNN+YL+A S++N   + +  FL++V  VF  YF+ELEEES+RDNFV++YELLDE+MDFG+PQ T++KIL E+I  + +++E    RPP  VTNAVSWRSEGI+Y+KNEVFLDV+ESVN+LV++NG ++RS++VG++KMR +LSGMPE +LGLND+VL +  GR  K KS++L
Sbjct:    2 SASAVYVLDLKGKVLICRNYRGDVDMSEVEHFMPILMEKEEEGML-SPILAHGGVRFMWIKHNNLYLVATSKKNACVSLVFSFLYKVVQVFSEYFKELEEESIRDNFVIIYELLDELMDFGYPQTTDSKILQEYITQEGHKLETGAPRPPATVTNAVSWRSEGIKYRKNEVFLDVIESVNLLVSANGNVLRSEIVGSIKMRVFLSGMPELRLGLNDKVLFDNTGRG-KSKSVEL 233          
BLAST of CX672059 vs. ExPASy Swiss-Prot
Match: AP1M1_RAT (AP-1 complex subunit mu-1 OS=Rattus norvegicus GN=Ap1m1 PE=1 SV=3)

HSP 1 Score: 270.011 bits (689), Expect = 1.149e-71
Identity = 128/234 (54.70%), Postives = 184/234 (78.63%), Query Frame = 1
Query:  133 AASALFLLDIKGRVLIWRDYRGDVSAIQAERFFTKFIEKEGDPQSQNPVVFDNGVTYMFIQHNNVYLMAASRQNCNAASILLFLHRVADVFKHYFEELEEESLRDNFVVVYELLDEIMDFGFPQFTEAKILSEFIKTDAYRMEV-TQRPPMAVTNAVSWRSEGIRYKKNEVFLDVVESVNILVNSNGQIVRSDVVGALKMRTYLSGMPECKLGLNDRVLLEAQGRSTKGKSIDL 831
            +ASA+++LD+KG+VLI R+YRGDV   + E F    +EKE +    +P++   GV +M+I+HNN+YL+A S++N   + +  FL++V  VF  YF+ELEEES+RDNFV++YELLDE+MDFG+PQ T++KIL E+I  + +++E    RPP  VTNAVSWRSEGI+Y+KNEVFLDV+E+VN+LV++NG ++RS++VG++KMR +LSGMPE +LGLND+VL +  GR  K KS++L
Sbjct:    2 SASAVYVLDLKGKVLICRNYRGDVDMSEVEHFMPILMEKEEEGML-SPILAHGGVRFMWIKHNNLYLVATSKKNACVSLVFSFLYKVVQVFSEYFKELEEESIRDNFVIIYELLDELMDFGYPQTTDSKILQEYITQEGHKLETGAPRPPATVTNAVSWRSEGIKYRKNEVFLDVIEAVNLLVSANGNVLRSEIVGSIKMRVFLSGMPELRLGLNDKVLFDNTGRG-KSKSVEL 233          
BLAST of CX672059 vs. ExPASy Swiss-Prot
Match: AP1M1_MOUSE (AP-1 complex subunit mu-1 OS=Mus musculus GN=Ap1m1 PE=1 SV=3)

HSP 1 Score: 270.011 bits (689), Expect = 1.149e-71
Identity = 128/234 (54.70%), Postives = 184/234 (78.63%), Query Frame = 1
Query:  133 AASALFLLDIKGRVLIWRDYRGDVSAIQAERFFTKFIEKEGDPQSQNPVVFDNGVTYMFIQHNNVYLMAASRQNCNAASILLFLHRVADVFKHYFEELEEESLRDNFVVVYELLDEIMDFGFPQFTEAKILSEFIKTDAYRMEV-TQRPPMAVTNAVSWRSEGIRYKKNEVFLDVVESVNILVNSNGQIVRSDVVGALKMRTYLSGMPECKLGLNDRVLLEAQGRSTKGKSIDL 831
            +ASA+++LD+KG+VLI R+YRGDV   + E F    +EKE +    +P++   GV +M+I+HNN+YL+A S++N   + +  FL++V  VF  YF+ELEEES+RDNFV++YELLDE+MDFG+PQ T++KIL E+I  + +++E    RPP  VTNAVSWRSEGI+Y+KNEVFLDV+E+VN+LV++NG ++RS++VG++KMR +LSGMPE +LGLND+VL +  GR  K KS++L
Sbjct:    2 SASAVYVLDLKGKVLICRNYRGDVDMSEVEHFMPILMEKEEEGML-SPILAHGGVRFMWIKHNNLYLVATSKKNACVSLVFSFLYKVVQVFSEYFKELEEESIRDNFVIIYELLDELMDFGYPQTTDSKILQEYITQEGHKLETGAPRPPATVTNAVSWRSEGIKYRKNEVFLDVIEAVNLLVSANGNVLRSEIVGSIKMRVFLSGMPELRLGLNDKVLFDNTGRG-KSKSVEL 233          
BLAST of CX672059 vs. ExPASy Swiss-Prot
Match: AP1M_CAEEL (AP-1 complex subunit mu-1-I OS=Caenorhabditis elegans GN=unc-101 PE=2 SV=2)

HSP 1 Score: 267.314 bits (682), Expect = 7.445e-71
Identity = 127/233 (54.51%), Postives = 178/233 (76.39%), Query Frame = 1
Query:  133 AASALFLLDIKGRVLIWRDYRGDVSAIQAERFFTKFIEKEGDPQSQNPVVFDNGVTYMFIQHNNVYLMAASRQNCNAASILLFLHRVADVFKHYFEELEEESLRDNFVVVYELLDEIMDFGFPQFTEAKILSEFIKTDAYRMEVTQRPPMAVTNAVSWRSEGIRYKKNEVFLDVVESVNILVNSNGQIVRSDVVGALKMRTYLSGMPECKLGLNDRVLLEAQGRSTKGKSIDL 831
            A SA+F+LD+KG+ +I R+YRGD+     ++F    +EKE +  S  PV+      ++FI+H N+YL++A R N N   IL FL++  +VF  YF+++EEES+RDNFVV+YELLDE+MDFGFPQ TE++IL E+I  +  ++    RPPMAVTNAVSWRSEGI+Y+KNEVFLDV+ESVN+L ++NG +++S++VG++KMR YL+GMPE +LGLND+VL E  GR  K KS++L
Sbjct:    2 ATSAMFILDLKGKTIISRNYRGDIDMTAIDKFIHLLMEKE-EEGSAAPVLTYQDTNFVFIKHTNIYLVSACRSNVNVTMILSFLYKCVEVFSEYFKDVEEESVRDNFVVIYELLDEMMDFGFPQTTESRILQEYITQEGQKLISAPRPPMAVTNAVSWRSEGIKYRKNEVFLDVIESVNMLASANGTVLQSEIVGSVKMRVYLTGMPELRLGLNDKVLFEGSGRG-KSKSVEL 232          
BLAST of CX672059 vs. ExPASy Swiss-Prot
Match: AP1M1_SCHPO (AP-1 complex subunit mu-1 OS=Schizosaccharomyces pombe GN=apm1 PE=1 SV=1)

HSP 1 Score: 260.766 bits (665), Expect = 6.968e-69
Identity = 121/232 (52.16%), Postives = 176/232 (75.86%), Query Frame = 1
Query:  136 ASALFLLDIKGRVLIWRDYRGDVSAIQAERFFTKFIEKEGDPQSQNPVVFDNGVTYMFIQHNNVYLMAASRQNCNAASILLFLHRVADVFKHYFEELEEESLRDNFVVVYELLDEIMDFGFPQFTEAKILSEFIKTDAYRMEVTQRPPMAVTNAVSWRSEGIRYKKNEVFLDVVESVNILVNSNGQIVRSDVVGALKMRTYLSGMPECKLGLNDRVLLEAQGRSTKGKSIDL 831
            ASA+F+L++KG+V+I RDYR D+     E+F     E E +     P +   G+ Y++I HN+VYL+A S+ N +A  +L+FL ++ADVF  YF+EL+EES+RDNFV+VYELLDEIMDFGFPQ TE KIL E+I   +  ++    PP+A+TNA+SWRSEGI Y+KNEVFLDV+ESVN++  ++G +++S+++G ++++ YLSGMPE +LGLND+VL EA GR+ KG ++++
Sbjct:    2 ASAIFVLNLKGKVIISRDYRADIPMSVVEKFLPLKSEVEEEQGFSTPCLTHEGINYIYIHHNDVYLLALSKMNSDAMEMLVFLRKMADVFIDYFKELQEESIRDNFVLVYELLDEIMDFGFPQTTETKILQEYITQTSNTVKKHAPPPIAMTNAISWRSEGIHYRKNEVFLDVIESVNLIAAADGTVIQSEILGKVRLKCYLSGMPELRLGLNDKVLFEAAGRTIKGNTVEM 233          
BLAST of CX672059 vs. ExPASy Swiss-Prot
Match: AP1M2_HUMAN (AP-1 complex subunit mu-2 OS=Homo sapiens GN=AP1M2 PE=1 SV=4)

HSP 1 Score: 256.914 bits (655), Expect = 1.006e-67
Identity = 125/234 (53.42%), Postives = 182/234 (77.78%), Query Frame = 1
Query:  133 AASALFLLDIKGRVLIWRDYRGDVSAIQAERFFTKFIEKEGDPQSQNPVVFDNGVTYMFIQHNNVYLMAASRQNCNAASILLFLHRVADVFKHYFEELEEESLRDNFVVVYELLDEIMDFGFPQFTEAKILSEFIKTDAYRMEVTQ-RPPMAVTNAVSWRSEGIRYKKNEVFLDVVESVNILVNSNGQIVRSDVVGALKMRTYLSGMPECKLGLNDRVLLEAQGRSTKGKSIDL 831
            +ASA+F+LD+KG+ LI R+Y+GDV+  + E F    +++E +  +  P++    V +++I+H+N+YL+A + +N NA+ +  FL++  +VF  YF+ELEEES+RDNFV+VYELLDE+MDFGFPQ T++KIL E+I   + ++E  + R P  VTNAVSWRSEGI+YKKNEVF+DV+ESVN+LVN+NG ++ S++VG +K++ +LSGMPE +LGLNDRVL E  GRS K KS++L
Sbjct:    2 SASAVFILDVKGKPLISRNYKGDVAMSKIEHFMPLLVQRE-EEGALAPLLSHGQVHFLWIKHSNLYLVATTSKNANASLVYSFLYKTIEVFCEYFKELEEESIRDNFVIVYELLDELMDFGFPQTTDSKILQEYITQQSNKLETGKSRVPPTVTNAVSWRSEGIKYKKNEVFIDVIESVNLLVNANGSVLLSEIVGTIKLKVFLSGMPELRLGLNDRVLFELTGRS-KNKSVEL 233          
BLAST of CX672059 vs. ExPASy Swiss-Prot
Match: AP1M2_BOVIN (AP-1 complex subunit mu-2 OS=Bos taurus GN=AP1M2 PE=1 SV=3)

HSP 1 Score: 256.144 bits (653), Expect = 1.716e-67
Identity = 123/234 (52.56%), Postives = 183/234 (78.21%), Query Frame = 1
Query:  133 AASALFLLDIKGRVLIWRDYRGDVSAIQAERFFTKFIEKEGDPQSQNPVVFDNGVTYMFIQHNNVYLMAASRQNCNAASILLFLHRVADVFKHYFEELEEESLRDNFVVVYELLDEIMDFGFPQFTEAKILSEFIKTDAYRMEVTQ-RPPMAVTNAVSWRSEGIRYKKNEVFLDVVESVNILVNSNGQIVRSDVVGALKMRTYLSGMPECKLGLNDRVLLEAQGRSTKGKSIDL 831
            +ASA+F+LD+KG+ LI R+Y+GDV+  + + F    +++E +  +  P++    V +++I+++N+YL+A + +N NA+ +  FL+++ +VF  YF+ELEEES+RDNFV+VYELLDE+MDFGFPQ T++KIL E+I     ++E  + R P  VTNAVSWRSEGI+YKKNEVF+DV+ESVN+LVN+NG ++ S++VG++K++ +LSGMPE +LGLNDRVL E  GRS K KS++L
Sbjct:    2 SASAVFILDVKGKPLISRNYKGDVAMSEIDHFMPLLMQRE-EEGALTPLLSHGRVHFLWIKYSNLYLVATTLKNANASLVYSFLYKIVEVFSEYFKELEEESIRDNFVIVYELLDELMDFGFPQTTDSKILQEYITQQGNKLETGKSRVPPTVTNAVSWRSEGIKYKKNEVFIDVIESVNLLVNANGSVLLSEIVGSIKLKVFLSGMPELRLGLNDRVLFELTGRS-KNKSVEL 233          
BLAST of CX672059 vs. ExPASy Swiss-Prot
Match: AP1M2_MOUSE (AP-1 complex subunit mu-2 OS=Mus musculus GN=Ap1m2 PE=1 SV=3)

HSP 1 Score: 252.292 bits (643), Expect = 2.478e-66
Identity = 123/234 (52.56%), Postives = 179/234 (76.50%), Query Frame = 1
Query:  133 AASALFLLDIKGRVLIWRDYRGDVSAIQAERFFTKFIEKEGDPQSQNPVVFDNGVTYMFIQHNNVYLMAASRQNCNAASILLFLHRVADVFKHYFEELEEESLRDNFVVVYELLDEIMDFGFPQFTEAKILSEFIKTDAYRMEVTQ-RPPMAVTNAVSWRSEGIRYKKNEVFLDVVESVNILVNSNGQIVRSDVVGALKMRTYLSGMPECKLGLNDRVLLEAQGRSTKGKSIDL 831
            +ASA+F+LD+KG+ LI R+Y+GDV   + + F    +++E +     P++    V +++I+H+N+YL+A + +N NA+ +  FL++  +VF  YF+ELEEES+RDNFV+VY+LLDE+MDFGFPQ T++KIL E+I     ++E  + R P  VTNAVSWRSEGI+YKKNEVF+DV+ESVN+LVN+NG ++ S++VG +K++ +LSGMPE +LGLNDRVL E  GRS K KS++L
Sbjct:    2 SASAVFILDVKGKPLISRNYKGDVPMTEIDHFMPLLMQREEEGVLA-PLLSHGRVHFLWIKHSNLYLVATTLKNANASLVYSFLYKTVEVFCEYFKELEEESIRDNFVIVYDLLDELMDFGFPQTTDSKILQEYITQQGNKLETGKSRVPPTVTNAVSWRSEGIKYKKNEVFIDVIESVNLLVNANGSVLLSEIVGTIKLKVFLSGMPELRLGLNDRVLFELTGRS-KNKSVEL 233          
The following BLAST results are available for this feature:
BLAST of CX672059 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 43
Match NameE-valueIdentityDescription
AP1M_DICDI5.156e-7254.62AP-1 complex subunit mu OS=Dictyostelium discoideu... [more]
AP1M1_HUMAN5.156e-7255.13AP-1 complex subunit mu-1 OS=Homo sapiens GN=AP1M1... [more]
AP1M1_BOVIN5.156e-7255.13AP-1 complex subunit mu-1 OS=Bos taurus GN=AP1M1 P... [more]
AP1M1_RAT1.149e-7154.70AP-1 complex subunit mu-1 OS=Rattus norvegicus GN=... [more]
AP1M1_MOUSE1.149e-7154.70AP-1 complex subunit mu-1 OS=Mus musculus GN=Ap1m1... [more]
AP1M_CAEEL7.445e-7154.51AP-1 complex subunit mu-1-I OS=Caenorhabditis eleg... [more]
AP1M1_SCHPO6.968e-6952.16AP-1 complex subunit mu-1 OS=Schizosaccharomyces p... [more]
AP1M2_HUMAN1.006e-6753.42AP-1 complex subunit mu-2 OS=Homo sapiens GN=AP1M2... [more]
AP1M2_BOVIN1.716e-6752.56AP-1 complex subunit mu-2 OS=Bos taurus GN=AP1M2 P... [more]
AP1M2_MOUSE2.478e-6652.56AP-1 complex subunit mu-2 OS=Mus musculus GN=Ap1m2... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS10_14F11_g Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-14F11-K22-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX672059 ID=CX672059; Name=CX672059; organism=Citrus sinensis; type=EST; length=831bp
AAGAATTTGCAGTAGAAAAGTTTTGTTCATTCAATTTGTCATTTGTGAGA
TTCATACCTGCACTGCCGCAGCTCGGATCTGGTGCTGGTGTTATACGCCG
GTGAGGTGAGGCTCTTTCATCAGATGGCTGGCGCCGCCTCGGCGCTCTTC
CTTCTTGACATCAAAGGACGTGTCTTGATTTGGCGTGATTATCGCGGCGA
TGTCTCCGCTATTCAAGCTGAACGCTTCTTCACCAAGTTCATCGAGAAAG
AGGGGGATCCGCAATCGCAAAATCCTGTGGTATTCGACAATGGTGTGACC
TACATGTTTATACAACACAACAATGTTTACCTGATGGCTGCTTCGAGGCA
GAACTGCAATGCTGCCAGTATTTTGTTATTTTTGCATCGCGTAGCTGATG
TGTTTAAACATTACTTTGAAGAGTTAGAAGAGGAATCTTTGCGAGATAAT
TTTGTGGTTGTGTATGAGTTGCTTGATGAGATAATGGACTTCGGTTTCCC
TCAATTCACTGAGGCAAAGATTCTTAGCGAGTTTATTAAGACTGATGCTT
ATAGGATGGAAGTTACACAGCGTCCTCCCATGGCTGTGACGAATGCAGTA
TCTTGGCGCAGTGAAGGGATACGGTACAAGAAAAACGAAGTTTTTCTGGA
TGTGGTCGAAAGTGTCAATATACTGGTCAACAGCAATGGGCAGATAGTCC
GTTCAGATGTTGTTGGGGCATTAAAAATGAGAACGTATTTGAGTGGTATG
CCTGAGTGTAAGCTTGGCCTAAATGATAGAGTACTACTGGAGGCACAGGG
TCGATCCACTAAAGGGAAAAGCATTGATCTG
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