CX672058

Overview
NameCX672058
Unique NameCX672058
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length887
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5129 contig Csv1_Contig5129:1..888. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX672058 vs. ExPASy Swiss-Prot
Match: AP1M1_RAT (AP-1 complex subunit mu-1 OS=Rattus norvegicus GN=Ap1m1 PE=1 SV=3)

HSP 1 Score: 231.491 bits (589), Expect = 4.981e-60
Identity = 111/160 (69.38%), Postives = 131/160 (81.88%), Query Frame = -3
Query:  406 LMTYRLSTQVKPLIWVEAQIERHSRSRIEIMVKARSQFKERSTATNVEIELPVPADATNPNVRTSMGSARYAPENDALVWKIKSFPGNKEYMLRAEFSLPSITAEEAAPERKAPIRVKFEIPYFTVSGIQVRYLKIIEKSGYQALPWVRYITMAGEYELR 885
            LM+YRL+T VKPLIW+E+ IE+HS SRIE MVKA+SQFK RSTA NVEI +PVP DA +P  +T++GS ++ PEN  +VW IKSFPG KEY++RA F LPS+ AE+   E K PI VKFEIPYFT SGIQVRYLKIIEKSGYQALPWVRYIT  G+Y+LR
Sbjct:  264 LMSYRLNTHVKPLIWIESVIEKHSHSRIEYMVKAKSQFKRRSTANNVEIHIPVPNDADSPKFKTTVGSVKWVPENSEIVWSIKSFPGGKEYLMRAHFGLPSVEAED--KEGKPPISVKFEIPYFTTSGIQVRYLKIIEKSGYQALPWVRYITQNGDYQLR 421          
BLAST of CX672058 vs. ExPASy Swiss-Prot
Match: AP1M1_MOUSE (AP-1 complex subunit mu-1 OS=Mus musculus GN=Ap1m1 PE=1 SV=3)

HSP 1 Score: 231.106 bits (588), Expect = 6.506e-60
Identity = 110/160 (68.75%), Postives = 131/160 (81.88%), Query Frame = -3
Query:  406 LMTYRLSTQVKPLIWVEAQIERHSRSRIEIMVKARSQFKERSTATNVEIELPVPADATNPNVRTSMGSARYAPENDALVWKIKSFPGNKEYMLRAEFSLPSITAEEAAPERKAPIRVKFEIPYFTVSGIQVRYLKIIEKSGYQALPWVRYITMAGEYELR 885
            LM+YRL+T VKPLIW+E+ IE+HS SRIE MVKA+SQFK RSTA NVEI +PVP DA +P  +T++GS ++ PEN  +VW +KSFPG KEY++RA F LPS+ AE+   E K PI VKFEIPYFT SGIQVRYLKIIEKSGYQALPWVRYIT  G+Y+LR
Sbjct:  264 LMSYRLNTHVKPLIWIESVIEKHSHSRIEYMVKAKSQFKRRSTANNVEIHIPVPNDADSPKFKTTVGSVKWVPENSEIVWSVKSFPGGKEYLMRAHFGLPSVEAED--KEGKPPISVKFEIPYFTTSGIQVRYLKIIEKSGYQALPWVRYITQNGDYQLR 421          
BLAST of CX672058 vs. ExPASy Swiss-Prot
Match: AP1M1_HUMAN (AP-1 complex subunit mu-1 OS=Homo sapiens GN=AP1M1 PE=1 SV=3)

HSP 1 Score: 231.106 bits (588), Expect = 6.506e-60
Identity = 110/160 (68.75%), Postives = 131/160 (81.88%), Query Frame = -3
Query:  406 LMTYRLSTQVKPLIWVEAQIERHSRSRIEIMVKARSQFKERSTATNVEIELPVPADATNPNVRTSMGSARYAPENDALVWKIKSFPGNKEYMLRAEFSLPSITAEEAAPERKAPIRVKFEIPYFTVSGIQVRYLKIIEKSGYQALPWVRYITMAGEYELR 885
            LM+YRL+T VKPLIW+E+ IE+HS SRIE M+KA+SQFK RSTA NVEI +PVP DA +P  +T++GS ++ PEN  +VW IKSFPG KEY++RA F LPS+ AE+   E K PI VKFEIPYFT SGIQVRYLKIIEKSGYQALPWVRYIT  G+Y+LR
Sbjct:  264 LMSYRLNTHVKPLIWIESVIEKHSHSRIEYMIKAKSQFKRRSTANNVEIHIPVPNDADSPKFKTTVGSVKWVPENSEIVWSIKSFPGGKEYLMRAHFGLPSVEAED--KEGKPPISVKFEIPYFTTSGIQVRYLKIIEKSGYQALPWVRYITQNGDYQLR 421          
BLAST of CX672058 vs. ExPASy Swiss-Prot
Match: AP1M1_BOVIN (AP-1 complex subunit mu-1 OS=Bos taurus GN=AP1M1 PE=1 SV=3)

HSP 1 Score: 231.106 bits (588), Expect = 6.506e-60
Identity = 110/160 (68.75%), Postives = 131/160 (81.88%), Query Frame = -3
Query:  406 LMTYRLSTQVKPLIWVEAQIERHSRSRIEIMVKARSQFKERSTATNVEIELPVPADATNPNVRTSMGSARYAPENDALVWKIKSFPGNKEYMLRAEFSLPSITAEEAAPERKAPIRVKFEIPYFTVSGIQVRYLKIIEKSGYQALPWVRYITMAGEYELR 885
            LM+YRL+T VKPLIW+E+ IE+HS SRIE M+KA+SQFK RSTA NVEI +PVP DA +P  +T++GS ++ PEN  +VW IKSFPG KEY++RA F LPS+ AE+   E K PI VKFEIPYFT SGIQVRYLKIIEKSGYQALPWVRYIT  G+Y+LR
Sbjct:  264 LMSYRLNTHVKPLIWIESVIEKHSHSRIEYMIKAKSQFKRRSTANNVEIHIPVPNDADSPKFKTTVGSVKWVPENSEIVWSIKSFPGGKEYLMRAHFGLPSVEAED--KEGKPPISVKFEIPYFTTSGIQVRYLKIIEKSGYQALPWVRYITQNGDYQLR 421          
BLAST of CX672058 vs. ExPASy Swiss-Prot
Match: AP1M_CAEEL (AP-1 complex subunit mu-1-I OS=Caenorhabditis elegans GN=unc-101 PE=2 SV=2)

HSP 1 Score: 229.565 bits (584), Expect = 1.893e-59
Identity = 109/161 (67.70%), Postives = 131/161 (81.37%), Query Frame = -3
Query:  403 LMTYRLSTQVKPLIWVEAQIERHSRSRIEIMVKARSQFKERSTATNVEIELPVPADATNPNVRTSMGSARYAPENDALVWKIKSFPGNKEYMLRAEFSLPSITAEEAAPERKAPIRVKFEIPYFTVSGIQVRYLKIIEKSGYQALPWVRYITMAGEYELRL 885
            LM+YRL+T VKPLIW+E  IERHS SR+  ++KA+SQFK RSTA NVEI +PVP+DA +P  +TS+GS +Y PE  A VW IK+FPG KEY+L A  SLPS+ +EE+  E + PI+VKFEIPYFT SGIQVRYLKIIEKSGYQALPWVRYIT  GEYE+R+
Sbjct:  263 LMSYRLTTVVKPLIWIETSIERHSHSRVSFIIKAKSQFKRRSTANNVEIIIPVPSDADSPKFKTSIGSVKYTPEQSAFVWTIKNFPGGKEYLLTAHLSLPSVMSEES--EGRPPIKVKFEIPYFTTSGIQVRYLKIIEKSGYQALPWVRYITQNGEYEMRM 421          
BLAST of CX672058 vs. ExPASy Swiss-Prot
Match: AP1M2_MOUSE (AP-1 complex subunit mu-2 OS=Mus musculus GN=Ap1m2 PE=1 SV=3)

HSP 1 Score: 229.18 bits (583), Expect = 2.472e-59
Identity = 108/160 (67.50%), Postives = 133/160 (83.12%), Query Frame = -3
Query:  406 LMTYRLSTQVKPLIWVEAQIERHSRSRIEIMVKARSQFKERSTATNVEIELPVPADATNPNVRTSMGSARYAPENDALVWKIKSFPGNKEYMLRAEFSLPSITAEEAAPERKAPIRVKFEIPYFTVSGIQVRYLKIIEKSGYQALPWVRYITMAGEYELR 885
            LM+YRLSTQVKPLIW+E+ IE+ S SR+EIMVKA+ QFK++S A  VEI +PVP+DA +P  +TS+GSA+Y PE + ++W IKSFPG KEY++RA F LPS+  EE   E + PI VKFEIPYFTVSGIQVRY+KIIEKSGYQALPWVRYIT +G+Y+LR
Sbjct:  264 LMSYRLSTQVKPLIWIESVIEKFSHSRVEIMVKAKGQFKKQSVANGVEISVPVPSDADSPRFKTSVGSAKYVPEKNVVIWSIKSFPGGKEYLMRAHFGLPSVETEEV--EGRPPIGVKFEIPYFTVSGIQVRYMKIIEKSGYQALPWVRYITQSGDYQLR 421          
BLAST of CX672058 vs. ExPASy Swiss-Prot
Match: AP1M2_HUMAN (AP-1 complex subunit mu-2 OS=Homo sapiens GN=AP1M2 PE=1 SV=4)

HSP 1 Score: 228.794 bits (582), Expect = 3.229e-59
Identity = 108/160 (67.50%), Postives = 133/160 (83.12%), Query Frame = -3
Query:  406 LMTYRLSTQVKPLIWVEAQIERHSRSRIEIMVKARSQFKERSTATNVEIELPVPADATNPNVRTSMGSARYAPENDALVWKIKSFPGNKEYMLRAEFSLPSITAEEAAPERKAPIRVKFEIPYFTVSGIQVRYLKIIEKSGYQALPWVRYITMAGEYELR 885
            LM+YRLSTQVKPLIW+E+ IE+ S SR+EIMVKA+ QFK++S A  VEI +PVP+DA +P  +TS+GSA+Y PE + ++W IKSFPG KEY++RA F LPS+  EE   E + PI VKFEIPYFTVSGIQVRY+KIIEKSGYQALPWVRYIT +G+Y+LR
Sbjct:  264 LMSYRLSTQVKPLIWIESVIEKFSHSRVEIMVKAKGQFKKQSVANGVEISVPVPSDADSPRFKTSVGSAKYVPERNVVIWSIKSFPGGKEYLMRAHFGLPSVEKEEV--EGRPPIGVKFEIPYFTVSGIQVRYMKIIEKSGYQALPWVRYITQSGDYQLR 421          
BLAST of CX672058 vs. ExPASy Swiss-Prot
Match: AP1M2_BOVIN (AP-1 complex subunit mu-2 OS=Bos taurus GN=AP1M2 PE=1 SV=3)

HSP 1 Score: 228.794 bits (582), Expect = 3.229e-59
Identity = 108/160 (67.50%), Postives = 133/160 (83.12%), Query Frame = -3
Query:  406 LMTYRLSTQVKPLIWVEAQIERHSRSRIEIMVKARSQFKERSTATNVEIELPVPADATNPNVRTSMGSARYAPENDALVWKIKSFPGNKEYMLRAEFSLPSITAEEAAPERKAPIRVKFEIPYFTVSGIQVRYLKIIEKSGYQALPWVRYITMAGEYELR 885
            LM+YRLSTQVKPLIW+E+ IE+ S SR+EIMVKA+ QFK++S A  VEI +PVP+DA +P  +TS+GSA+Y PE + ++W IKSFPG KEY++RA F LPS+  EE   E + PI VKFEIPYFTVSGIQVRY+KIIEKSGYQALPWVRYIT +G+Y+LR
Sbjct:  264 LMSYRLSTQVKPLIWIESVIEKFSHSRVEIMVKAKGQFKKQSVANGVEISVPVPSDADSPRFKTSVGSAKYVPEKNTVIWSIKSFPGGKEYLMRAHFGLPSVEKEEV--EGRPPIGVKFEIPYFTVSGIQVRYMKIIEKSGYQALPWVRYITQSGDYQLR 421          
BLAST of CX672058 vs. ExPASy Swiss-Prot
Match: AP1M_DICDI (AP-1 complex subunit mu OS=Dictyostelium discoideum GN=apm1 PE=1 SV=1)

HSP 1 Score: 209.92 bits (533), Expect = 1.552e-53
Identity = 101/161 (62.73%), Postives = 127/161 (78.88%), Query Frame = -3
Query:  406 LMTYRLSTQVKPLIWVEAQIERHSRSRIEIMVKARSQFKERSTATNVEIELPVPADATNPNVRTSMGSARYAPENDALVWKIKSFP-GNKEYMLRAEFSLPSITAEEAAPERKAPIRVKFEIPYFTVSGIQVRYLKIIEKSGYQALPWVRYITMAGEYELR 885
            LM+YRL+T VKPLIWVE   + H+ SR+E MVKA+SQFK +S A NVEI +PVP DA  P  R ++G+ +YAPE DA++W IK FP G +E+++RA F LPSI+ E+  P  K PI VKFEIPY+TVSGIQVRYLKIIEKSGYQALPWVRY+ ++G+Y+ R
Sbjct:  268 LMSYRLNTTVKPLIWVECISDTHAHSRVEYMVKAKSQFKGKSIANNVEIIVPVPPDADTPKFRCTVGTCKYAPEKDAIIWTIKQFPGGGREFLMRAHFGLPSISDEK--PATKPPIMVKFEIPYYTVSGIQVRYLKIIEKSGYQALPWVRYVCLSGDYQFR 426          
BLAST of CX672058 vs. ExPASy Swiss-Prot
Match: AP1M1_SCHPO (AP-1 complex subunit mu-1 OS=Schizosaccharomyces pombe GN=apm1 PE=1 SV=1)

HSP 1 Score: 187.963 bits (476), Expect = 6.316e-47
Identity = 92/162 (56.79%), Postives = 118/162 (72.84%), Query Frame = -3
Query:  406 LMTYRLSTQVKPLIWVEAQIERHSRSRIEIMVKARSQFKERSTATNVEIELPVPADATNPNVRTSMGSARYAPENDALVWKIKSFPGNKEYMLRAEFSLPSITAEEAAPERKAPIRVKFEIPYFTVSGIQVRYLKIIE-KSGYQALPWVRYITMAG-EYELR 885
            LM+YR+S+ V+PLIWVE +   HS SRIE MVKA++QFK+R  A NV+I +PVP DA +P  +TS G  +YAPE  A+VW IK F G KE+ +RAE  LPS+  E+   ++K P+++KF IPYFT SGIQVRYLKI E K  Y A+PWVRY+T  G EY +R
Sbjct:  264 LMSYRMSSNVRPLIWVECESIVHSGSRIEFMVKAKAQFKKRCIANNVQIIIPVPEDADSPRFQTSNGHVQYAPEQAAMVWNIKKFAGGKEFFMRAEMGLPSVKNEDIQVQKKRPVQLKFAIPYFTTSGIQVRYLKITEPKLNYHAMPWVRYVTQNGTEYSIR 425          
The following BLAST results are available for this feature:
BLAST of CX672058 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 26
Match NameE-valueIdentityDescription
AP1M1_RAT4.981e-6069.38AP-1 complex subunit mu-1 OS=Rattus norvegicus GN=... [more]
AP1M1_MOUSE6.506e-6068.75AP-1 complex subunit mu-1 OS=Mus musculus GN=Ap1m1... [more]
AP1M1_HUMAN6.506e-6068.75AP-1 complex subunit mu-1 OS=Homo sapiens GN=AP1M1... [more]
AP1M1_BOVIN6.506e-6068.75AP-1 complex subunit mu-1 OS=Bos taurus GN=AP1M1 P... [more]
AP1M_CAEEL1.893e-5967.70AP-1 complex subunit mu-1-I OS=Caenorhabditis eleg... [more]
AP1M2_MOUSE2.472e-5967.50AP-1 complex subunit mu-2 OS=Mus musculus GN=Ap1m2... [more]
AP1M2_HUMAN3.229e-5967.50AP-1 complex subunit mu-2 OS=Homo sapiens GN=AP1M2... [more]
AP1M2_BOVIN3.229e-5967.50AP-1 complex subunit mu-2 OS=Bos taurus GN=AP1M2 P... [more]
AP1M_DICDI1.552e-5362.73AP-1 complex subunit mu OS=Dictyostelium discoideu... [more]
AP1M1_SCHPO6.316e-4756.79AP-1 complex subunit mu-1 OS=Schizosaccharomyces p... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS10_14F11_b Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-14F11-K22-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX672058 ID=CX672058; Name=CX672058; organism=Citrus sinensis; type=EST; length=887bp
TTTTTTTTTGTCTCAAAATTTGTATTAAAATTTTATAATTTAAAATTGAG
ATTAGATACAAAAAGCAACAGCCATAATACAAAGAAAGCTACCTGTTGAT
CAATTTTACAACCAATGTTTATTAATTCCCACAAAAAATAATTGAAAAAC
TTTTGGAAGAACATTGCATCCCTACGAAATAAACTGGTATATTCAAAGGA
TTAGTAAAAGCACACAGCTTGAAGAAAAGAAAATCACCAAAGGACGTCAC
TACGGAAAGCAAAATTATGAGAAGAAACAACTTCCCAAATGAAAAAGGTC
TTTATCCTCTGTAGTTTCAAAGCCATATGATATATTTACGCACTTCAAAG
AGCCTGGAACGGACCTTTAGAGTTACATCTAATGAAGTATGGACCTTTAC
ATCAGTCTTAACTCGTATTCACCAGCCATCGTAATGTATCTCACCCATGG
AAGAGCCTGGTATCCACTTTTTTCAATTATCTTCAAATAACGAACCTGAA
TCCCTGAAACAGTAAAATATGGTATCTCAAACTTCACACGTATTGGAGCC
TTTCTCTCAGGTGCTGCTTCTTCTGCTGTTATACTAGGAAGACTAAACTC
TGCCCTCAACATATACTCCTTATTACCGGGAAAAGATTTGATTTTCCAGA
CCAAAGCATCATTCTCAGGAGCATATCTAGCAGATCCCATTGATGTCCGA
ACGTTGGGATTTGTTGCATCAGCTGGTACAGGCAACTCGATTTCAACATT
TGTTGCGGTGCTACGCTCCTTGAACTGGCTCCGTGCTTTTACCATTATTT
CAATTCGACTTCTAGAATGCCTTTCAATTTGAGCTTCCACCCAAATTAGA
GGTTTCACCTGAGTACTGAGTCTATACGTCATGAGAT
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