CX672051

Overview
NameCX672051
Unique NameCX672051
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length771
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6276 contig Csv1_Contig6276:38..808. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX672051 vs. ExPASy Swiss-Prot
Match: PSAD_NICSY (Photosystem I reaction center subunit II, chloroplastic OS=Nicotiana sylvestris GN=psaD PE=2 SV=1)

HSP 1 Score: 329.717 bits (844), Expect = 1.071e-89
Identity = 169/205 (82.44%), Postives = 177/205 (86.34%), Query Frame = 1
Query:    1 AATTQASLFAPANFSTTKSSAPWKQS-SSFSVRPLKHNAPRTNTIKAMAEGKTETPTKEAPVGFTPPELDPNTPSPIFGGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMREGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGREGVGQNYRSIGKNVSPIEVKFTGKQVYDL 612
            A  TQASLF PA  S  KSSAPWKQS +SFS + LK        I+AMAE +  T   EAPVGFTPP+LDPNTPSPIFGGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMREG NLLKLARKEQCLALGTRLRSKYKI Y+FYRVFPNGEVQYLHPKDGVYPEKVN GR+GVGQN+RSIGKN SPIEVKFTGKQVYDL
Sbjct:    2 AMATQASLFTPA-LSAPKSSAPWKQSLASFSPKQLKSTVSAPRPIRAMAE-EAATKEAEAPVGFTPPQLDPNTPSPIFGGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMREGANLLKLARKEQCLALGTRLRSKYKINYRFYRVFPNGEVQYLHPKDGVYPEKVNAGRQGVGQNFRSIGKNKSPIEVKFTGKQVYDL 204          
BLAST of CX672051 vs. ExPASy Swiss-Prot
Match: PSAD_CUCSA (Photosystem I reaction center subunit II, chloroplastic OS=Cucumis sativus GN=psaD PE=1 SV=1)

HSP 1 Score: 322.783 bits (826), Expect = 1.309e-87
Identity = 167/210 (79.52%), Postives = 177/210 (84.29%), Query Frame = 1
Query:    1 AATTQASLFAPANFSTTKS---SAPWKQSSSFSV---RPLKHNAPRTNTIKAMAEGKTETPTKEAPVGFTPPELDPNTPSPIFGGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMREGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGREGVGQNYRSIGKNVSPIEVKFTGKQVYDL 612
            A  TQA+LF P+  ST KS   S PWKQSS+ S    +P    A  + + K  AE +T     EAP GF+PPELDP+TPSPIF GSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMREGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGREGVGQN+RSIGKNVSPIEVKFTGKQVYDL
Sbjct:    2 AMATQATLFTPS-LSTPKSTGISIPWKQSSTLSFLTSKPHLKAASSSRSFKVSAEAETSV---EAPAGFSPPELDPSTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMREGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGREGVGQNFRSIGKNVSPIEVKFTGKQVYDL 207          
BLAST of CX672051 vs. ExPASy Swiss-Prot
Match: PSAD_SOLLC (Photosystem I reaction center subunit II, chloroplastic OS=Solanum lycopersicum GN=psaD PE=2 SV=1)

HSP 1 Score: 321.627 bits (823), Expect = 2.916e-87
Identity = 165/207 (79.71%), Postives = 173/207 (83.57%), Query Frame = 1
Query:    1 AATTQASLFAPANFSTTKSSAPWKQSS-SFSV-RPLKHNAPRTNTIKAMAE-GKTETPTKEAPVGFTPPELDPNTPSPIFGGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMREGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGREGVGQNYRSIGKNVSPIEVKFTGKQVYDL 612
            A  TQASLF P       ++APWKQS  SFS  + LK     T  I+AMAE     T  K AP GFTPP+LDPNTPSPIFGGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMR+GPNLLKLARKEQCLALGTRLRSKYKI YQFYRVFPNGEVQYLHPKDGVYPEKVNPGREGVGQN+RSIGKN S IEVKFTGKQVYD+
Sbjct:    2 AMATQASLFTPPLSVPKSTTAPWKQSLVSFSTPKQLKSTVSVTRPIRAMAEEAPAATEEKPAPAGFTPPQLDPNTPSPIFGGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMRQGPNLLKLARKEQCLALGTRLRSKYKINYQFYRVFPNGEVQYLHPKDGVYPEKVNPGREGVGQNFRSIGKNKSAIEVKFTGKQVYDI 208          
BLAST of CX672051 vs. ExPASy Swiss-Prot
Match: PSAD_SPIOL (Photosystem I reaction center subunit II, chloroplastic OS=Spinacia oleracea GN=psaD PE=1 SV=2)

HSP 1 Score: 312.383 bits (799), Expect = 1.769e-84
Identity = 164/214 (76.64%), Postives = 180/214 (84.11%), Query Frame = 1
Query:    1 AATTQASLFAPANFST-----TKSSAPWKQSSS--FSVRPL-KHNAPRTNTIKAMAEGKTE--TPTKEAPVGFTPPELDPNTPSPIFGGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMREGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGREGVGQNYRSIGKNVSPIEVKFTGKQVYDL 612
            A  TQA+LF+P++ S+     T+ +  +KQ S+  F+ +P  +H++ R     A AEGK    T TKEAP GFTPPELDPNTPSPIF GSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMREGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFP+GEVQYLHPKDGVYPEKVNPGR+GVG N RSIGKNVSPIEVKFTGKQ YDL
Sbjct:    2 AMATQATLFSPSSLSSAKPIDTRLTTSFKQPSAVTFASKPASRHHSIRA---AAAAEGKAAAATETKEAPKGFTPPELDPNTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMREGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPSGEVQYLHPKDGVYPEKVNPGRQGVGLNMRSIGKNVSPIEVKFTGKQPYDL 212          
BLAST of CX672051 vs. ExPASy Swiss-Prot
Match: PSAD2_ARATH (Photosystem I reaction center subunit II-2, chloroplastic OS=Arabidopsis thaliana GN=psaD2 PE=1 SV=1)

HSP 1 Score: 302.368 bits (773), Expect = 1.831e-81
Identity = 156/204 (76.47%), Postives = 164/204 (80.39%), Query Frame = 1
Query:    4 ATTQASLFAPANFSTTKSSAPWKQSSSFSVRPLKHNAPRTNTIKAMAEGKTETPT-KEAPVGFTPPELDPNTPSPIFGGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMREGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGREGVGQNYRSIGKNVSPIEVKFTGKQVYDL 612
            AT  A +F+PA  +TT S+       S S RP   +  +T       E  +  P  KEAPVGFTPP+LDPNTPSPIF GSTGGLLRKAQVEEFYVITW SPKEQIFEMPTGGAAIMREGPNLLKLARKEQCLALGTRLRSKYKI YQFYRVFPNGEVQYLHPKDGVYPEK NPGREGVG N RSIGKNVSPIEVKFTGKQ YDL
Sbjct:    2 ATQAAGIFSPA-ITTTTSAVKKLHLFSSSHRPKSLSFTKTAIRAEKTESSSAAPAVKEAPVGFTPPQLDPNTPSPIFAGSTGGLLRKAQVEEFYVITWNSPKEQIFEMPTGGAAIMREGPNLLKLARKEQCLALGTRLRSKYKITYQFYRVFPNGEVQYLHPKDGVYPEKANPGREGVGLNMRSIGKNVSPIEVKFTGKQSYDL 204          
BLAST of CX672051 vs. ExPASy Swiss-Prot
Match: PSAD1_ARATH (Photosystem I reaction center subunit II-1, chloroplastic OS=Arabidopsis thaliana GN=psaD1 PE=1 SV=1)

HSP 1 Score: 295.434 bits (755), Expect = 2.238e-79
Identity = 156/209 (74.64%), Postives = 163/209 (77.99%), Query Frame = 1
Query:    4 ATTQASLFAPANFSTTKSSAPWKQSSSFSV--RP----LKHNAPRTNTIKAMAEGKTETPTKEAPVGFTPPELDPNTPSPIFGGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMREGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGREGVGQNYRSIGKNVSPIEVKFTGKQVYDL 612
            AT  A +F  A   TT +++  K+   FS   RP        A R     + A       TKEAPVGFTPP+LDPNTPSPIF GSTGGLLRKAQVEEFYVITW SPKEQIFEMPTGGAAIMREGPNLLKLARKEQCLALGTRLRSKYKI YQFYRVFPNGEVQYLHPKDGVYPEK NPGREGVG N RSIGKNVSPIEVKFTGKQ YDL
Sbjct:    2 ATQAAGIFNSA--ITTAATSGVKKLHFFSTTHRPKSLSFTKTAIRAEKTDSSAAAAAAPATKEAPVGFTPPQLDPNTPSPIFAGSTGGLLRKAQVEEFYVITWNSPKEQIFEMPTGGAAIMREGPNLLKLARKEQCLALGTRLRSKYKITYQFYRVFPNGEVQYLHPKDGVYPEKANPGREGVGLNMRSIGKNVSPIEVKFTGKQSYDL 208          
BLAST of CX672051 vs. ExPASy Swiss-Prot
Match: PSAD_HORVU (Photosystem I reaction center subunit II, chloroplastic OS=Hordeum vulgare GN=psaD PE=1 SV=1)

HSP 1 Score: 281.182 bits (718), Expect = 4.367e-75
Identity = 132/150 (88.00%), Postives = 140/150 (93.33%), Query Frame = 1
Query:  163 PTKEAPVGFTPPELDPNTPSPIFGGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMREGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGREGVGQNYRSIGKNVSPIEVKFTGKQVYDL 612
            P + AP GF PP+LDP+TPSPIFGGSTGGLLRKAQVEEFYVITW SPKEQ+FEMPTGGAAIMREGPNLLKLARKEQCLALG RLRSKYKI YQFYRVFPNGEVQYLHPKDGVYPEKVN GR+GVGQN+RSIGKNVSPIEVKFTGK  +D+
Sbjct:   56 PAEPAPAGFVPPQLDPSTPSPIFGGSTGGLLRKAQVEEFYVITWTSPKEQVFEMPTGGAAIMREGPNLLKLARKEQCLALGNRLRSKYKIAYQFYRVFPNGEVQYLHPKDGVYPEKVNAGRQGVGQNFRSIGKNVSPIEVKFTGKNSFDI 205          
BLAST of CX672051 vs. ExPASy Swiss-Prot
Match: PSAD_CHLRE (Photosystem I reaction center subunit II, chloroplastic OS=Chlamydomonas reinhardtii GN=psaD PE=1 SV=1)

HSP 1 Score: 223.402 bits (568), Expect = 1.081e-57
Identity = 115/186 (61.83%), Postives = 140/186 (75.27%), Query Frame = 1
Query:   49 TKSSAPWKQSSSFSVRPLKHNAPRTNTIKAMAEGKTETPTKEAPV-GFTPPELDPNTPSPIFGGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMREGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGREGVGQNYRSIGKNVSPIEVKFTGKQV 603
            T++ A  + SS  +V   +  A R   ++A AE       K A    +T P L+P+TPSPIFGGSTGGLLRKAQ EEFYVITWE+ KEQIFEMPTGGAAIMR+GPNLLK  +KEQCLAL T+LR+K+K+   FYRVFP+G+VQYLHP DGVYPEKVN GR G  QN R IG+NV+PI+VKF+G+ +
Sbjct:    7 TQAPAATRASSRVAVAA-RPAARRAVVVRAEAEAAPAAAKKAAEKPAWTVPTLNPDTPSPIFGGSTGGLLRKAQTEEFYVITWEAKKEQIFEMPTGGAAIMRQGPNLLKFGKKEQCLALTTQLRNKFKLTPCFYRVFPDGKVQYLHPADGVYPEKVNAGRVGANQNMRRIGQNVNPIKVKFSGRMM 191          
BLAST of CX672051 vs. ExPASy Swiss-Prot
Match: PSAD_CYAPA (Photosystem I reaction center subunit II, cyanelle OS=Cyanophora paradoxa GN=psaD PE=2 SV=1)

HSP 1 Score: 202.986 bits (515), Expect = 1.511e-51
Identity = 107/200 (53.50%), Postives = 134/200 (67.00%), Query Frame = 1
Query:   43 STTKSSAPWKQSSSF------SVRPLKHNAPRTNTIKAMAEGKTETPTKE----APVGFTPPELDPNTPSPIFGGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMREGPNLLKLARKEQCLALGTRLRSKYKI-KYQFYRVFPNGEVQYLHPKDGVYPEKVNPGREGVGQNYRSIGKNVSPIEVKFTGKQVYD 609
            S T SSA   Q  +F      + +     AP    ++A  E        E    AP  F+ P L+ N P+PIFGGSTGGLLRKA+VEEFY ITW    E +FE+PTGGAAIMR G NLL+LARKEQC+ALG +L+ K+KI  Y+ YRV+P+GEVQ+LHPKDGV+PEKVNPGR  VG N R IG+N  P ++KF G++ +D
Sbjct:   16 SATLSSAVCAQKKAFFGAQVAAKKTTFEAAPARFIVRAEEEEAAPAEKVEKKAAAPKPFSVPTLNLNAPTPIFGGSTGGLLRKAEVEEFYSITWTGKSETVFELPTGGAAIMRAGENLLRLARKEQCIALGAQLKDKFKITDYKIYRVYPSGEVQFLHPKDGVFPEKVNPGRVAVGSNKRRIGQNPDPAKLKFKGQETFD 215          
BLAST of CX672051 vs. ExPASy Swiss-Prot
Match: PSAD_GUITH (Photosystem I reaction center subunit II OS=Guillardia theta GN=psaD PE=3 SV=1)

HSP 1 Score: 192.971 bits (489), Expect = 1.564e-48
Identity = 93/137 (67.88%), Postives = 110/137 (80.29%), Query Frame = 1
Query:  202 LDPNTPSPIFGGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMREGPNLLKLARKEQCLALGTRLRSKYKI-KYQFYRVFPNGEVQYLHPKDGVYPEKVNPGREGVGQNYRSIGKNVSPIEVKFTGKQVYD 609
            L+   PSP F GSTGG LR A+ EE Y ITW SPKEQ+FEMPTGGAAIMR+G NLL LARKEQCLALGT++++ +KI  Y+ YR+FP+GEVQYLHPKDGV+PEKVNPGR GVG    SIGKN++P ++KFT K   D
Sbjct:    5 LNLQIPSPTFEGSTGGWLRAAETEEKYAITWTSPKEQVFEMPTGGAAIMRKGENLLYLARKEQCLALGTQVKTSFKITDYKIYRIFPSGEVQYLHPKDGVFPEKVNPGRIGVGNVSHSIGKNLNPAQIKFTNKSFCD 141          
The following BLAST results are available for this feature:
BLAST of CX672051 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 26
Match NameE-valueIdentityDescription
PSAD_NICSY1.071e-8982.44Photosystem I reaction center subunit II, chloropl... [more]
PSAD_CUCSA1.309e-8779.52Photosystem I reaction center subunit II, chloropl... [more]
PSAD_SOLLC2.916e-8779.71Photosystem I reaction center subunit II, chloropl... [more]
PSAD_SPIOL1.769e-8476.64Photosystem I reaction center subunit II, chloropl... [more]
PSAD2_ARATH1.831e-8176.47Photosystem I reaction center subunit II-2, chloro... [more]
PSAD1_ARATH2.238e-7974.64Photosystem I reaction center subunit II-1, chloro... [more]
PSAD_HORVU4.367e-7588.00Photosystem I reaction center subunit II, chloropl... [more]
PSAD_CHLRE1.081e-5761.83Photosystem I reaction center subunit II, chloropl... [more]
PSAD_CYAPA1.511e-5153.50Photosystem I reaction center subunit II, cyanelle... [more]
PSAD_GUITH1.564e-4867.88Photosystem I reaction center subunit II OS=Guilla... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS10_14F07_g Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-14F07-K14-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX672051 ID=CX672051; Name=CX672051; organism=Citrus sinensis; type=EST; length=771bp
GCCGCAACAACTCAAGCCTCTCTCTTCGCACCGGCCAACTTCTCCACCAC
CAAATCCTCTGCGCCGTGGAAGCAATCATCATCATTTTCAGTAAGGCCAC
TAAAACATAATGCCCCACGTACCAACACCATCAAGGCCATGGCTGAGGGA
AAAACAGAGACACCCACAAAAGAGGCTCCGGTGGGCTTCACCCCACCAGA
ACTGGACCCCAACACCCCATCTCCGATCTTCGGAGGCAGCACCGGCGGGC
TGCTGCGGAAGGCTCAGGTGGAAGAGTTTTATGTGATCACATGGGAGTCT
CCTAAGGAGCAAATATTTGAAATGCCCACTGGGGGTGCGGCCATTATGAG
AGAAGGTCCGAATTTGCTGAAGCTGGCTAGGAAAGAGCAGTGCTTGGCTC
TGGGGACAAGGCTGAGGTCCAAGTACAAGATTAAGTACCAGTTTTACCGA
GTGTTTCCCAATGGAGAGGTTCAGTATTTGCATCCCAAGGATGGTGTTTA
TCCTGAGAAAGTGAACCCCGGAAGGGAAGGAGTTGGGCAGAATTACAGGT
CTATTGGTAAGAATGTGAGTCCTATTGAGGTCAAGTTTACAGGGAAGCAA
GTGTATGATCTGTAAATTTAAATTGTAAGCTGCTAAGCTGACGGGCCTCG
GATGATCTGTTGATTAATTGTTGTGATCATTTACTTGTTTGTATTCGTGT
TTTCTTTTCCTTAAAAATATTGTATGAAAGCAAGACTTGATCGCTGAAAC
TATTTTATACATGCAATATCT
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