CX672048

Overview
NameCX672048
Unique NameCX672048
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length798
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX672048 vs. ExPASy Swiss-Prot
Match: RPTOR_HUMAN (Regulatory-associated protein of mTOR OS=Homo sapiens GN=RPTOR PE=1 SV=1)

HSP 1 Score: 168.703 bits (426), Expect = 9.239e-64
Identity = 88/164 (53.66%), Postives = 110/164 (67.07%), Query Frame = 1
Query:  307 ALSVGIFPYVLKLLQTTTPELRQILVFIWTKILALDKSCQVDLVKDGGHAYFIRFLDSMEAYPEQRAMAAFVLAVIVDGHRRGQEACIEAGLIHVCLKHLQGSMPNDAQTEPLFLQWLCLCLGKLWEDFTEAQTIGRRADAPAIYVPLLSEPQPEVRASAVFSL 798
            ALSVGIFPYVLKLLQ++  ELR +LVFIW KILA+D SCQ DLVKD GH YF+  L       E R M AF+LAVIV+ +  GQEAC++  LI +CL+ L     ND    PL  QW+ +CLG++W++F  A+  G R  A      LLS+P PEVR +AVF+L
Sbjct:  467 ALSVGIFPYVLKLLQSSARELRPLLVFIWAKILAVDSSCQADLVKDNGHKYFLSVLADPYMPAEHRTMTAFILAVIVNSYHTGQEACLQGNLIAICLEQL-----ND--PHPLLRQWVAICLGRIWQNFDSARWCGVRDSAHEKLYSLLSDPIPEVRCAAVFAL 623          

HSP 2 Score: 97.0561 bits (240), Expect = 9.239e-64
Identity = 46/59 (77.97%), Postives = 51/59 (86.44%), Query Frame = 2
Query:   20 FFSEQLTAFEVWLDHGSEHKKPPEQLPIVLQVLLSQCHRFRALVLLGRFLDMGPWAVDL 196
            FF+EQLTAF+VWL  G E++ PPEQLPIVLQVLLSQ HR RAL LLGRFLD+GPWAV L
Sbjct:  408 FFAEQLTAFQVWLTMGVENRNPPEQLPIVLQVLLSQVHRLRALDLLGRFLDLGPWAVSL 466          
BLAST of CX672048 vs. ExPASy Swiss-Prot
Match: RPTOR_MOUSE (Regulatory-associated protein of mTOR OS=Mus musculus GN=Rptor PE=1 SV=1)

HSP 1 Score: 168.318 bits (425), Expect = 1.205e-63
Identity = 86/164 (52.44%), Postives = 109/164 (66.46%), Query Frame = 1
Query:  307 ALSVGIFPYVLKLLQTTTPELRQILVFIWTKILALDKSCQVDLVKDGGHAYFIRFLDSMEAYPEQRAMAAFVLAVIVDGHRRGQEACIEAGLIHVCLKHLQGSMPNDAQTEPLFLQWLCLCLGKLWEDFTEAQTIGRRADAPAIYVPLLSEPQPEVRASAVFSL 798
            ALSVGIFPYVLKLLQ++  ELR +LVFIW KILA+D SCQ DLVKD GH YF+  L       E R M AF+LAVIV+ +  GQEAC++  LI +CL+ L       +   PL  QW+ +CLG++W++F  A+  G R  A      LLS+P PEVR +AVF+L
Sbjct:  467 ALSVGIFPYVLKLLQSSARELRPLLVFIWAKILAVDSSCQADLVKDNGHKYFLSVLADPYMPAEHRTMTAFILAVIVNSYTTGQEACLQGNLIAICLEQL-------SDPHPLLRQWVAICLGRIWQNFDSARWCGVRDSAHEKLYSLLSDPIPEVRCAAVFAL 623          

HSP 2 Score: 97.0561 bits (240), Expect = 1.205e-63
Identity = 46/59 (77.97%), Postives = 51/59 (86.44%), Query Frame = 2
Query:   20 FFSEQLTAFEVWLDHGSEHKKPPEQLPIVLQVLLSQCHRFRALVLLGRFLDMGPWAVDL 196
            FF+EQLTAF+VWL  G E++ PPEQLPIVLQVLLSQ HR RAL LLGRFLD+GPWAV L
Sbjct:  408 FFAEQLTAFQVWLTMGVENRSPPEQLPIVLQVLLSQVHRLRALDLLGRFLDLGPWAVSL 466          
BLAST of CX672048 vs. ExPASy Swiss-Prot
Match: RPTOR_DICDI (Protein raptor homolog OS=Dictyostelium discoideum GN=raptor PE=1 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 2.662e-38
Identity = 85/164 (51.83%), Postives = 110/164 (67.07%), Query Frame = 1
Query:  307 ALSVGIFPYVLKLLQTTTPELRQILVFIWTKILALDKSCQVDLVKDGGHAYFIRFLDSMEAYPEQRAMAAFVLAVIVDGHRRGQEACIEAGLIHVCLKHLQGSMPNDAQTEPLFLQWLCLCLGKLWEDFTEAQTIGRRADAPAIYVPLLSEPQPEVRASAVFSL 798
            AL VGIFPYVLKLLQ+   +LR ILVFIW KILALDKSCQ+DLVK+ GHAYFI  L S +   +QR M+AFVL+ I +  R GQ AC+   L+ +CL  L     ND   +P+  +W+ LC+ K+WE+F EA+    + +A      LL++  PEVRASAV +L
Sbjct:  586 ALCVGIFPYVLKLLQSPAGDLRHILVFIWAKILALDKSCQLDLVKENGHAYFISVLSSPQIPADQRTMSAFVLSTICNNCRPGQNACLIGNLLPICLSQL-----ND--PDPMVRRWMILCMAKMWENFEEAKWAAIKENAHEKLCLLLTDVSPEVRASAVVAL 742          

HSP 2 Score: 106.686 bits (265), Expect = 1.557e-22
Identity = 59/103 (57.28%), Postives = 73/103 (70.87%), Query Frame = 2
Query:   20 FFSEQLTAFEVWLDHGSEHKKPPEQLPIVLQVLLSQCHRFRALVLLGRFLDMGPWAVDLVSIAVCGFQLFYL*EL--CICCD*RIFVIYLWIE-FGYCRRCQL 319
            FF+EQLTAFEVWL+ GSEHK PP QLPIVLQVLLSQ HR RALVLLG+FLD+GPWAV+L   A+C     Y+ +L      D R  ++++W +     + CQL
Sbjct:  527 FFTEQLTAFEVWLEFGSEHKDPPAQLPIVLQVLLSQAHRLRALVLLGKFLDLGPWAVNL---ALCVGIFPYVLKLLQSPAGDLRHILVFIWAKILALDKSCQL 626          
BLAST of CX672048 vs. ExPASy Swiss-Prot
Match: MIP1_SCHPO (WD repeat-containing protein mip1 OS=Schizosaccharomyces pombe GN=mip1 PE=1 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 5.194e-34
Identity = 82/191 (42.93%), Postives = 117/191 (61.26%), Query Frame = 1
Query:  238 RIVYLL*LANFCDLLVD*IWIL*-ALSVGIFPYVLKLLQTTTPELRQILVFIWTKILALDKSCQVDLVKDGGHAYFIRFLD-SMEAYP-----EQRAMAAFVLAVIVDGHRRGQEACIEAGLIHVCLKHLQGSMPNDAQTEPLFLQWLCLCLGKLWEDFTEAQTIGRRADAPAIYVPLLSEPQPEVRASAV 789
            R+  L+ L+ F DL V   W +  ALS+GIFPYVLKLLQ+   EL+ +LVFIW +ILA+D SCQ DL+KD G+ YF++ L+ +   +P     E RAM AF+L+V   G  +GQ AC+   ++  CL HL          + L  QW CLC+ +LWE+++EA+  G R +A      ++ +  PEVRAS +
Sbjct:  504 RLRALILLSKFLDLGV---WAVDLALSIGIFPYVLKLLQSPAIELKPVLVFIWARILAVDDSCQADLLKDNGYGYFVQILNPNSSIFPSSNISEHRAMCAFILSVFCRGFPQGQLACLNPQVLSHCLSHLN-------SPDSLLRQWACLCISQLWENYSEAKWSGTRDNAHVKLAEIIVDSVPEVRASVL 684          

HSP 2 Score: 94.7449 bits (234), Expect = 6.124e-19
Identity = 47/70 (67.14%), Postives = 56/70 (80.00%), Query Frame = 2
Query:   20 FFSEQLTAFEVWLDHGSEHKKPPEQLPIVLQVLLSQCHRFRALVLLGRFLDMGPWAVDL-VSIAVCGFQL 226
            FFSEQLTAFEVWL  G   +KPP+QLP+VLQVLLSQ HR RAL+LL +FLD+G WAVDL +SI +  + L
Sbjct:  466 FFSEQLTAFEVWLSQGLISRKPPDQLPLVLQVLLSQVHRLRALILLSKFLDLGVWAVDLALSIGIFPYVL 535          
BLAST of CX672048 vs. ExPASy Swiss-Prot
Match: KOG1_YEAST (Target of rapamycin complex 1 subunit KOG1 OS=Saccharomyces cerevisiae GN=KOG1 PE=1 SV=2)

HSP 1 Score: 90.8929 bits (224), Expect = 8.843e-18
Identity = 46/70 (65.71%), Postives = 54/70 (77.14%), Query Frame = 2
Query:   20 FFSEQLTAFEVWLDHGSEHKKPPEQLPIVLQVLLSQCHRFRALVLLGRFLDMGPWAVDL-VSIAVCGFQL 226
            FF + LTAFE+WL + S  + PPEQLPIVLQVLLSQ HR RALVLL RFLD+GPWAV L +SI +  + L
Sbjct:  529 FFEQNLTAFELWLKYASNVRHPPEQLPIVLQVLLSQVHRIRALVLLSRFLDLGPWAVYLSLSIGIFPYVL 598          

HSP 2 Score: 72.0182 bits (175), Expect = 4.279e-12
Identity = 39/80 (48.75%), Postives = 58/80 (72.50%), Query Frame = 1
Query:  238 RIVYLL*LANFCDLLVD*IWIL*ALSVGIFPYVLKLLQTTTPELRQILVFIWTKILALD-KSCQVDLVKDGGHAYFIRFL 474
            RI  L+ L+ F DL    +++  +LS+GIFPYVLKLLQ+  PEL+ ILVFIW +I+++D K+ Q +L+K+ G+ YF+  L
Sbjct:  567 RIRALVLLSRFLDLGPWAVYL--SLSIGIFPYVLKLLQSPAPELKPILVFIWARIMSIDYKNTQSELIKEKGYMYFVTVL 644          
The following BLAST results are available for this feature:
BLAST of CX672048 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
RPTOR_HUMAN9.239e-6453.66Regulatory-associated protein of mTOR OS=Homo sapi... [more]
RPTOR_MOUSE1.205e-6352.44Regulatory-associated protein of mTOR OS=Mus muscu... [more]
RPTOR_DICDI2.662e-3851.83Protein raptor homolog OS=Dictyostelium discoideum... [more]
MIP1_SCHPO5.194e-3442.93WD repeat-containing protein mip1 OS=Schizosacchar... [more]
KOG1_YEAST8.843e-1865.71Target of rapamycin complex 1 subunit KOG1 OS=Sacc... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS10_14F06_b Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-14F06-K12-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX672048 ID=CX672048; Name=CX672048; organism=Citrus sinensis; type=EST; length=798bp
GAATATCAGCCTAGTCCTTTTTTTTAGTGAACAGCTGACGGCTTTTGAGG
TGTGGCTTGACCATGGATCCGAACATAAAAAGCCACCGGAGCAGTTGCCC
ATTGTTCTTCAGGTTTTACTTAGTCAATGCCATAGATTTCGGGCACTAGT
TCTTCTTGGAAGATTTCTTGACATGGGACCCTGGGCTGTAGATCTGGTAA
GTATTGCCGTCTGCGGTTTTCAGTTATTCTATCTCTGAGAATTGTGTATT
TGTTGTGATTAGCGAATTTTTGTGATTTACTTGTGGATTGAATTTGGATA
TTGTAGGCGTTGTCAGTTGGGATATTTCCCTATGTTCTGAAGCTGCTCCA
AACTACAACGCCAGAACTACGGCAAATTCTTGTATTCATATGGACAAAGA
TTCTAGCACTTGATAAGTCTTGTCAGGTTGATCTTGTTAAGGATGGAGGA
CATGCTTATTTTATCAGGTTTCTTGATAGCATGGAAGCATATCCAGAACA
GCGAGCCATGGCTGCATTTGTATTGGCTGTCATTGTTGATGGACATAGGC
GGGGCCAGGAAGCATGTATCGAAGCTGGTCTGATCCATGTGTGCTTGAAG
CATCTTCAGGGTTCAATGCCAAATGATGCACAAACTGAACCATTATTTCT
TCAGTGGCTCTGCCTGTGTCTGGGAAAGCTGTGGGAGGATTTCACAGAGG
CTCAAACAATAGGTCGGCGGGCAGATGCCCCAGCAATTTACGTTCCTCTA
CTTTCTGAACCACAGCCAGAGGTTAGGGCTTCAGCCGTCTTCTCATTG
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