EY664611

Overview
NameEY664611
Unique NameEY664611
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length907
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY664611_ssr835 microsatellite EY664611_ssr835:835..850. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of EY664611 vs. ExPASy Swiss-Prot
Match: RB11B_TOBAC (Ras-related protein Rab11B OS=Nicotiana tabacum GN=RAB11B PE=2 SV=1)

HSP 1 Score: 261.922 bits (668), Expect = 3.557e-69
Identity = 130/144 (90.28%), Postives = 139/144 (96.53%), Query Frame = 3
Query:   12 RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDAHSFAEKENTFFMETSALESLNVENAFTEVLTQIYRVVSRKALDVGDDPAALPKGQTINIGTKDDVSAVKKTGCCSA 443
            RYRAITSAYYRGAVGAL+VYD+TRHVTFENVERWLKELRDHTD NIVIMLVGNKADLRHLRAVSTEDA +FAE+ENTFFMETSALESLNVENAFTEVLT+IY+VV RKAL+VGDDPAALPKGQTIN+G KDDVSAVKK GCCS+
Sbjct:   75 RYRAITSAYYRGAVGALVVYDITRHVTFENVERWLKELRDHTDQNIVIMLVGNKADLRHLRAVSTEDAKAFAERENTFFMETSALESLNVENAFTEVLTEIYKVVCRKALEVGDDPAALPKGQTINVG-KDDVSAVKKVGCCSS 217          
BLAST of EY664611 vs. ExPASy Swiss-Prot
Match: RIC2_ORYSJ (Ras-related protein RIC2 OS=Oryza sativa subsp. japonica GN=RIC2 PE=2 SV=2)

HSP 1 Score: 218.394 bits (555), Expect = 4.510e-56
Identity = 110/144 (76.39%), Postives = 126/144 (87.50%), Query Frame = 3
Query:   12 RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDAHSFAEKENTFFMETSALESLNVENAFTEVLTQIYRVVSRKALDVGDDPAALP-KGQTINIGTKDDVSAVKKTGCCS 440
            RYRAITSAYYRGAVGALLVYDVTRH TFENVERWLKELRDHTD NIV+MLVGNK+DLRHL AV T++  +FAE+E+ +FMETSALES NVENAF EVLTQIYR+VS+++++ GDD  + P KG+ INI  KDDVSAVKK GCCS
Sbjct:   75 RYRAITSAYYRGAVGALLVYDVTRHSTFENVERWLKELRDHTDPNIVVMLVGNKSDLRHLVAVQTDEGKAFAERESLYFMETSALESTNVENAFAEVLTQIYRIVSKRSVEAGDDAGSGPGKGEKINI--KDDVSAVKKGGCCS 216          
BLAST of EY664611 vs. ExPASy Swiss-Prot
Match: YPT3_NICPL (Ras-related protein YPT3 OS=Nicotiana plumbaginifolia GN=YPT3 PE=2 SV=1)

HSP 1 Score: 213.386 bits (542), Expect = 1.451e-54
Identity = 108/147 (73.47%), Postives = 126/147 (85.71%), Query Frame = 3
Query:   12 RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDAHSFAEKENTFFMETSALESLNVENAFTEVLTQIYRVVSRKALDVGDDPA---ALPKGQTINIGTKDDVSAVKKTGCCSA 443
            RYRAITSAYYRGAVGALLVYDVTRHVT+ENV RWLKELRDHTD NIV+ML+GNK+DLRHL AVST++A   AE+E  +FMETSALE+ NVENAFTE LTQIYR+VS+KA++ GD+ A   A PKG+TINI  KD+ S+ KK GCCS+
Sbjct:   74 RYRAITSAYYRGAVGALLVYDVTRHVTYENVTRWLKELRDHTDPNIVVMLIGNKSDLRHLVAVSTDEAKGLAEREGLYFMETSALEATNVENAFTEALTQIYRIVSKKAVEAGDEGATSSAPPKGETINI--KDEGSSWKKFGCCSS 218          
BLAST of EY664611 vs. ExPASy Swiss-Prot
Match: RAA1C_ARATH (Ras-related protein RABA1c OS=Arabidopsis thaliana GN=RABA1C PE=1 SV=1)

HSP 1 Score: 209.534 bits (532), Expect = 2.095e-53
Identity = 108/144 (75.00%), Postives = 122/144 (84.72%), Query Frame = 3
Query:   12 RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDAHSFAEKENTFFMETSALESLNVENAFTEVLTQIYRVVSRKALDVGDDPAALP-KGQTINIGTKDDVSAVKKTGCCS 440
            RYRAITSAYYRGAVGALLVYDVTRH TFENVE WLKELR+HTD NIV+MLVGNK+DLRHL AV TEDA SFAEKE+ +FMETSALE+ NVENAF EVLTQI+ +VS+KA++   + A +P KG  I+IG   DVSAVKK GCCS
Sbjct:   74 RYRAITSAYYRGAVGALLVYDVTRHSTFENVETWLKELRNHTDPNIVVMLVGNKSDLRHLVAVQTEDAKSFAEKESLYFMETSALEATNVENAFAEVLTQIHHIVSKKAMEAASESANVPSKGDKIDIG--KDVSAVKKGGCCS 215          
BLAST of EY664611 vs. ExPASy Swiss-Prot
Match: RB11D_LOTJA (Ras-related protein Rab11D OS=Lotus japonicus GN=RAB11D PE=2 SV=1)

HSP 1 Score: 208.379 bits (529), Expect = 4.667e-53
Identity = 106/146 (72.60%), Postives = 123/146 (84.25%), Query Frame = 3
Query:   12 RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDAHSFAEKENTFFMETSALESLNVENAFTEVLTQIYRVVSRKALDVGD--DPAALP-KGQTINIGTKDDVSAVKKTGCCS 440
            RYRAITSAYYRGAVGALLVYDVTR  TFEN  RWLKELRDHTD NIV+ML+GNK+DLRHL AV TED  SFAE+E+ +FMETSALE+ NVENAFTEVLTQIYR+VS++A++ GD    + LP KGQTIN+  K+D S +K+ GCCS
Sbjct:   74 RYRAITSAYYRGAVGALLVYDVTRRATFENAARWLKELRDHTDPNIVVMLIGNKSDLRHLVAVPTEDGKSFAERESLYFMETSALEATNVENAFTEVLTQIYRIVSKRAVEAGDSGSSSGLPSKGQTINV--KEDSSVLKRFGCCS 217          
BLAST of EY664611 vs. ExPASy Swiss-Prot
Match: RAA1B_ARATH (Ras-related protein RABA1b OS=Arabidopsis thaliana GN=RABA1B PE=2 SV=1)

HSP 1 Score: 204.142 bits (518), Expect = 8.802e-52
Identity = 102/144 (70.83%), Postives = 123/144 (85.42%), Query Frame = 3
Query:   12 RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDAHSFAEKENTFFMETSALESLNVENAFTEVLTQIYRVVSRKALDVGDD-PAALPKGQTINIGTKDDVSAVKKTGCCS 440
            RYRAITSAYYRGAVGALLVYDVTR  TFENV+RWLKEL++HTD NIV+MLVGNK+DLRHL AV TED  S+AE+E+  FMETSALE+ NVE+AF EVLTQIYR+ S+K ++ G+D  A++PKG+ I +  K+DVSA+KK GCCS
Sbjct:   74 RYRAITSAYYRGAVGALLVYDVTRRATFENVDRWLKELKNHTDPNIVVMLVGNKSDLRHLLAVPTEDGKSYAEQESLCFMETSALEATNVEDAFAEVLTQIYRITSKKQVEAGEDGNASVPKGEKIEV--KNDVSALKKLGCCS 215          
BLAST of EY664611 vs. ExPASy Swiss-Prot
Match: RAA1A_ARATH (Ras-related protein RABA1a OS=Arabidopsis thaliana GN=RABA1A PE=2 SV=1)

HSP 1 Score: 203.371 bits (516), Expect = 1.501e-51
Identity = 99/144 (68.75%), Postives = 123/144 (85.42%), Query Frame = 3
Query:   12 RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDAHSFAEKENTFFMETSALESLNVENAFTEVLTQIYRVVSRKALDVGDDPAALP-KGQTINIGTKDDVSAVKKTGCCS 440
            RYRAITSAYYRGAVGALL+YDVTRH TFEN  RWL+ELR HTD NIV+ML+GNK DLRHL AV TE+A +FAE+E+ +FMETSAL++ NVENAFTEVLTQI+++VS++++D G + A LP KG+TIN+  K+D S +K+ GCCS
Sbjct:   74 RYRAITSAYYRGAVGALLIYDVTRHATFENAARWLRELRGHTDPNIVVMLIGNKCDLRHLVAVKTEEAKAFAERESLYFMETSALDATNVENAFTEVLTQIHKIVSKRSVDGGGESADLPGKGETINV--KEDGSVLKRMGCCS 215          
BLAST of EY664611 vs. ExPASy Swiss-Prot
Match: RB11E_LOTJA (Ras-related protein Rab11E OS=Lotus japonicus GN=RAB11E PE=2 SV=1)

HSP 1 Score: 196.823 bits (499), Expect = 1.405e-49
Identity = 99/146 (67.81%), Postives = 118/146 (80.82%), Query Frame = 3
Query:   12 RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDAHSFAEKENTFFMETSALESLNVENAFTEVLTQIYRVVSRKALDVGDDPAAL---PKGQTINIGTKDDVSAVKKTGCCS 440
            RYRAITSAYYRGAVGALLVYDVTR  TFE   RWLKELRDHTD NIV+ML+GNK+DLRHL  VSTED  +FAEKE+ +FMETSALE+ NVENAF+EVLTQIYR+VS++A++ GD P+      +GQTIN+   +D S + +  CCS
Sbjct:   74 RYRAITSAYYRGAVGALLVYDVTRSTTFETAGRWLKELRDHTDPNIVVMLIGNKSDLRHLVTVSTEDGKAFAEKESLYFMETSALEATNVENAFSEVLTQIYRIVSKRAVEAGDRPSTSVVPSQGQTINV--NEDSSVLNRYRCCS 217          
BLAST of EY664611 vs. ExPASy Swiss-Prot
Match: YPTC6_CHLRE (Ras-related protein YPTC6 OS=Chlamydomonas reinhardtii GN=YPTC6 PE=3 SV=1)

HSP 1 Score: 185.652 bits (470), Expect = 3.240e-46
Identity = 95/144 (65.97%), Postives = 111/144 (77.08%), Query Frame = 3
Query:   12 RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDAHSFAEKENTFFMETSALESLNVENAFTEVLTQIYRVVSRKALDVGDDPAALPKGQ-TINIGTKDDVSAVKKTGCCS 440
            RYRAITSAYYRGAVGALLVYD+T+ VTFENVERWLKELRDH DSNIVIMLVGNK+DL+HLR V TE A +F E+E   F+ETSALES NVE AF ++LT+IY +VS+K LD  D+   + +G+  I I    D    KK GCCS
Sbjct:   73 RYRAITSAYYRGAVGALLVYDITKSVTFENVERWLKELRDHADSNIVIMLVGNKSDLKHLRDVQTEVAQAFCEREGLSFIETSALESTNVEKAFQQILTEIYHIVSKKVLDSEDNRPKIGEGRDVIVIDNAHDDGGKKKGGCCS 216          
BLAST of EY664611 vs. ExPASy Swiss-Prot
Match: RAA2A_ARATH (Ras-related protein RABA2a OS=Arabidopsis thaliana GN=RABA2A PE=2 SV=1)

HSP 1 Score: 183.341 bits (464), Expect = 1.608e-45
Identity = 92/146 (63.01%), Postives = 116/146 (79.45%), Query Frame = 3
Query:   12 RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDAHSFAEKENTFFMETSALESLNVENAFTEVLTQIYRVVSRKAL--DVGDDPAALPKGQTINIGTKDDVSAVKKTGCCSA 443
            RYRAITSAYYRGA+GALLVYDVT+  TFENV RWLKELRDH DSNIVIML+GNK DL+HLRAV+TEDA S+AEKE   F+ETSALE+LNVE AF  +L+++YR++S+K++  D     A + +GQTI++    + +A  K  CCS+
Sbjct:   73 RYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMLIGNKTDLKHLRAVATEDAQSYAEKEGLSFIETSALEALNVEKAFQTILSEVYRIISKKSISSDQTTANANIKEGQTIDVAATSESNA--KKPCCSS 216          
The following BLAST results are available for this feature:
BLAST of EY664611 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 305
Match NameE-valueIdentityDescription
RB11B_TOBAC3.557e-6990.28Ras-related protein Rab11B OS=Nicotiana tabacum GN... [more]
RIC2_ORYSJ4.510e-5676.39Ras-related protein RIC2 OS=Oryza sativa subsp. ja... [more]
YPT3_NICPL1.451e-5473.47Ras-related protein YPT3 OS=Nicotiana plumbaginifo... [more]
RAA1C_ARATH2.095e-5375.00Ras-related protein RABA1c OS=Arabidopsis thaliana... [more]
RB11D_LOTJA4.667e-5372.60Ras-related protein Rab11D OS=Lotus japonicus GN=R... [more]
RAA1B_ARATH8.802e-5270.83Ras-related protein RABA1b OS=Arabidopsis thaliana... [more]
RAA1A_ARATH1.501e-5168.75Ras-related protein RABA1a OS=Arabidopsis thaliana... [more]
RB11E_LOTJA1.405e-4967.81Ras-related protein Rab11E OS=Lotus japonicus GN=R... [more]
YPTC6_CHLRE3.240e-4665.97Ras-related protein YPTC6 OS=Chlamydomonas reinhar... [more]
RAA2A_ARATH1.608e-4563.01Ras-related protein RABA2a OS=Arabidopsis thaliana... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-068-E02-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY664611 ID=EY664611; Name=EY664611; organism=Citrus sinensis; type=EST; length=907bp
CCACGCGTCCGCGATATCGTGCTATCACAAGTGCGTACTACCGGGGAGCT
GTTGGTGCCTTGCTTGTCTATGATGTCACCCGACATGTTACTTTTGAGAA
TGTTGAGAGATGGTTGAAAGAGCTTCGGGATCACACAGACTCAAACATTG
TGATAATGCTTGTGGGTAACAAGGCTGATTTGCGTCACTTGCGTGCTGTT
TCAACTGAGGATGCTCATTCGTTCGCTGAGAAAGAGAACACTTTCTTCAT
GGAAACCTCTGCCCTAGAGTCGTTGAATGTTGAAAATGCCTTCACCGAAG
TGCTCACTCAGATATATCGAGTTGTTAGCAGGAAGGCTCTTGATGTAGGT
GATGACCCAGCAGCCTTGCCCAAGGGTCAAACTATTAATATTGGTACTAA
AGATGATGTATCGGCTGTGAAAAAGACTGGGTGCTGCTCTGCATAATCTG
CAGCTTCGAAGGAAAATCCAGGTGCTAAAAAATAGTTTCTCCTCTTTCTA
GAACTTACATTTCCATGGCTTGGAGACATCTTGGCTTTGATCTGCTTGCC
AGGACGAGACATCATGGAGTGCGGGAAGAATATTATAGTTTACATTTCAT
CATGTACCGGTAATCTCAAAATCTTGCTTGAGTTAGGGTAAAGCCATAAT
CATTTGGATCTGAGATCTCATGTTTGGTGCAAGAGCCTACTGTTTTTCTC
TTATTGGATTGGCTCTGGGTGGCCTCCAAAAAATATTGGATGATGGTATC
AGCTCCTAAGCCTTAAGATAGTTTATATTTGGGTTTCTGAGGACTGGAAT
TGGGAAAGTATGTAAGGATAATTCTGTCTTAAACTTGATTGATTGATTGA
TTTTTTGGAACCGGAAAAAAAAAAAAAAGGGCGGGCGGTTTTAAAGGATC
AGCTTTA
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