CX672017

Overview
NameCX672017
Unique NameCX672017
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length820
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig84 contig Csv1_Contig84:317..1135. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX672017 vs. ExPASy Swiss-Prot
Match: RUBA_PEA (RuBisCO large subunit-binding protein subunit alpha, chloroplastic OS=Pisum sativum PE=1 SV=2)

HSP 1 Score: 335.495 bits (859), Expect = 2.171e-91
Identity = 179/229 (78.17%), Postives = 194/229 (84.72%), Query Frame = -2
Query:  133 VEQLGTARKVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXXXKDSEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQAIXXXXXXXXXXXXXXPQGLMV 819
            +EQLG ARKVTI KDSTTIIADAASKDE+Q+R+AQLKKEL+ETDS+YDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGG ALVHLS +VPAIK+KLEDADERLGADIVQKALVAPA+LIA NA           K+ EW  GYNAMTD YEN++++GVIDPAKVTRCALQNAASVAGMVLTTQAI              PQGL +
Sbjct:  359 IEQLGLARKVTISKDSTTIIADAASKDELQSRVAQLKKELSETDSIYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGTALVHLSGYVPAIKEKLEDADERLGADIVQKALVAPAALIAQNAGIEGEVVVEKIKNGEWEVGYNAMTDTYENLVESGVIDPAKVTRCALQNAASVAGMVLTTQAIVVEKPKPKAAVAAAPQGLTI 587          
BLAST of CX672017 vs. ExPASy Swiss-Prot
Match: RUB1_BRANA (RuBisCO large subunit-binding protein subunit alpha, chloroplastic (Fragment) OS=Brassica napus PE=2 SV=2)

HSP 1 Score: 335.495 bits (859), Expect = 2.171e-91
Identity = 181/229 (79.04%), Postives = 193/229 (84.28%), Query Frame = -2
Query:  133 VEQLGTARKVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXXXKDSEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQAIXXXXXXXXXXXXXXPQGLMV 819
            ++QLG ARKVTI KDSTT+IADAASKDE+QARI+QLKKEL+ETDSVYDSEKLAERIAKL+GGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGA LVHLS  +PAIK+KLEDADERLGADIVQKALVAPA+LIA NA             SEW  GYNAMTD YEN+L+AGVIDPAKVTRCALQNAASVAGMVLTTQAI              PQGLMV
Sbjct:  318 IDQLGIARKVTISKDSTTLIADAASKDELQARISQLKKELSETDSVYDSEKLAERIAKLAGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGATLVHLSTVIPAIKEKLEDADERLGADIVQKALVAPAALIAQNAGIEGEVVVEKIMFSEWEIGYNAMTDTYENLLEAGVIDPAKVTRCALQNAASVAGMVLTTQAIVVDKPKPKAPTAAPPQGLMV 546          
BLAST of CX672017 vs. ExPASy Swiss-Prot
Match: RUBA_ARATH (RuBisCO large subunit-binding protein subunit alpha, chloroplastic OS=Arabidopsis thaliana GN=At2g28000 PE=1 SV=2)

HSP 1 Score: 328.561 bits (841), Expect = 2.654e-89
Identity = 177/229 (77.29%), Postives = 190/229 (82.97%), Query Frame = -2
Query:  133 VEQLGTARKVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXXXKDSEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQAIXXXXXXXXXXXXXXPQGLMV 819
            ++QLG ARKVTI KDSTT+IADAASKDE+QARIAQLKKEL ETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLS  +PAIK+  EDADERLGADIVQKAL++PA+LIA NA             S+W  GYNAMTD YEN+ +AGVIDPAKVTRCALQNAASVAGMVLTTQAI              P+GLMV
Sbjct:  358 IDQLGIARKVTISKDSTTLIADAASKDELQARIAQLKKELFETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSTVIPAIKETFEDADERLGADIVQKALLSPAALIAQNAGVEGEVVVEKIMFSDWENGYNAMTDTYENLFEAGVIDPAKVTRCALQNAASVAGMVLTTQAIVVDKPKPKAPAAAAPEGLMV 586          
BLAST of CX672017 vs. ExPASy Swiss-Prot
Match: RUBA_WHEAT (RuBisCO large subunit-binding protein subunit alpha, chloroplastic (Fragment) OS=Triticum aestivum PE=1 SV=1)

HSP 1 Score: 325.094 bits (832), Expect = 2.934e-88
Identity = 168/209 (80.38%), Postives = 188/209 (89.95%), Query Frame = -2
Query:  193 VEQLGTARKVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXXXKDSEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQAI 819
            V+QLGTARK+TI + +TT+IADAASKDEIQAR+AQLKKEL+ETDS+YDSEKLAERIAKLSGGVAVIKVGA TETELEDR+LRIEDAKNATFAAIEEGIVPGGGAA VHLS +VPAIK+ +ED DERLGADI+QKAL APASLIA+NA           K+SEW  GYNAMTDKYEN++++GVIDPAKVTRCALQNAASV+GMVLTTQAI
Sbjct:  314 VDQLGTARKITIHQTTTTLIADAASKDEIQARVAQLKKELSETDSIYDSEKLAERIAKLSGGVAVIKVGATTETELEDRQLRIEDAKNATFAAIEEGIVPGGGAAYVHLSTYVPAIKETIEDHDERLGADIIQKALQAPASLIANNAGVEGEVVIEKIKESEWEMGYNAMTDKYENLIESGVIDPAKVTRCALQNAASVSGMVLTTQAI 522          
BLAST of CX672017 vs. ExPASy Swiss-Prot
Match: RUB2_BRANA (RuBisCO large subunit-binding protein subunit alpha, chloroplastic OS=Brassica napus PE=2 SV=1)

HSP 1 Score: 314.309 bits (804), Expect = 5.180e-85
Identity = 175/229 (76.42%), Postives = 185/229 (80.79%), Query Frame = -2
Query:  133 VEQLGTARKVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXXXKDSEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQAIXXXXXXXXXXXXXXPQGLMV 819
            ++QLG ARKVTI KDSTT+IADAASK E+QARI+QLKKE  ETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGA LVHLS  +PAIK+  EDAD RLGADIVQKALVA  SLIA NA             SEW  GYNAMTD YEN+L+AGVIDPAKVTRCALQNAASVAGMVLTTQAI              P+GLMV
Sbjct:  356 IDQLGIARKVTISKDSTTLIADAASKAELQARISQLKKESFETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGATLVHLSTVIPAIKETFEDADVRLGADIVQKALVA-QSLIAQNAGIEGEVVVEKIMFSEWELGYNAMTDTYENLLEAGVIDPAKVTRCALQNAASVAGMVLTTQAIVVDKPKPKAPAAAAPEGLMV 583          
BLAST of CX672017 vs. ExPASy Swiss-Prot
Match: RUBA_RICCO (RuBisCO large subunit-binding protein subunit alpha (Fragment) OS=Ricinus communis PE=2 SV=1)

HSP 1 Score: 304.294 bits (778), Expect = 5.360e-82
Identity = 163/195 (83.59%), Postives = 172/195 (88.21%), Query Frame = -2
Query:  235 VEQLGTARKVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXXXKDSEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQN 819
            VEQLG ARKVTI KDSTT+IADAASKDE+QARIAQLK+ELAETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLS  VPAI  + +DADERLGADI+QKALVAPASLIA NA           K  EW  GYNAMTDKYEN+++AGVIDPAKVTRCALQN
Sbjct:  301 VEQLGIARKVTITKDSTTLIADAASKDELQARIAQLKRELAETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSTVVPAINGEDKDADERLGADILQKALVAPASLIAQNAGIEGEVVVEKVKAREWEIGYNAMTDKYENLVEAGVIDPAKVTRCALQN 495          
BLAST of CX672017 vs. ExPASy Swiss-Prot
Match: RUBA_CHLRE (RuBisCO large subunit-binding protein subunit alpha, chloroplastic OS=Chlamydomonas reinhardtii PE=2 SV=1)

HSP 1 Score: 284.263 bits (726), Expect = 5.740e-76
Identity = 150/209 (71.77%), Postives = 171/209 (81.82%), Query Frame = -2
Query:  193 VEQLGTARKVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXXXKDSEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQAI 819
            VEQLG ARKVT+  ++TT+IADAASKDEI+ RIAQLKKELAETDSVYD+EKL+ERIAKLSGGVAVIKVGAATE ELEDRKLRIEDAKNATFAA+EEGIVPGGGAAL+HLS+ VPA K+ L DA+E+LGADIV K+L AP  LIA NA               +  GYNAM DK EN+L AGVIDPAKVTR  L N+ S+AG++LTTQA+
Sbjct:  347 VEQLGVARKVTVANNTTTLIADAASKDEIEMRIAQLKKELAETDSVYDTEKLSERIAKLSGGVAVIKVGAATEAELEDRKLRIEDAKNATFAAVEEGIVPGGGAALLHLSELVPAFKETLTDAEEKLGADIVMKSLRAPCRLIADNAGVEGEVIVQRLLGKPFEVGYNAMIDKVENLLDAGVIDPAKVTRNGLLNSVSIAGIMLTTQAV 555          
BLAST of CX672017 vs. ExPASy Swiss-Prot
Match: CH602_ANAVT (60 kDa chaperonin 2 OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=groL2 PE=3 SV=2)

HSP 1 Score: 246.128 bits (627), Expect = 1.732e-64
Identity = 131/209 (62.68%), Postives = 164/209 (78.47%), Query Frame = -2
Query:  193 VEQLGTARKVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXXXKDSEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQAI 819
            +E LGTA+K+TI KD+TTI+A   +K EIQ RIAQ++++L ETDS YDSEKL ERIAKL+GG+AVIKVGAATETEL+DRKLRIEDA NAT AA+ EGIVPGGG  L++L+  V  IK K  D +E++GADIV++AL AP   IA NA           KDS++ TGYNA T ++E+++ AG+IDPAKV R ALQNAAS+AG+VLTT+AI
Sbjct:  312 LEALGTAQKITIEKDNTTIVAGNTTKPEIQKRIAQIRRQLEETDSEYDSEKLQERIAKLAGGIAVIKVGAATETELKDRKLRIEDALNATKAAVAEGIVPGGGKTLIYLASKVDEIK-KNFDEEEKIGADIVKRALEAPLRQIADNAGVEGSVIVSRVKDSDFNTGYNAATGEFEDLIAAGIIDPAKVVRSALQNAASIAGLVLTTEAI 519          
BLAST of CX672017 vs. ExPASy Swiss-Prot
Match: CH602_ANASP (60 kDa chaperonin 2 OS=Anabaena sp. (strain PCC 7120) GN=groL2 PE=3 SV=1)

HSP 1 Score: 243.817 bits (621), Expect = 8.597e-64
Identity = 130/209 (62.20%), Postives = 163/209 (77.99%), Query Frame = -2
Query:  193 VEQLGTARKVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXXXKDSEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQAI 819
            +E LGTA+K+TI KD+TTI+A   +K EIQ RIAQ++++L ETDS YDSEKL ERIAKL+GG+AVIKVGAATETEL+DRKLRIEDA NAT AA+ EGIVPGGG  L++L+  V  IK K  D +E++GADIV++AL AP   IA NA           KDS++  GYNA T ++E+++ AG+IDPAKV R ALQNAAS+AG+VLTT+AI
Sbjct:  312 LEALGTAQKITIEKDNTTIVAGNTTKPEIQKRIAQIRRQLEETDSEYDSEKLQERIAKLAGGIAVIKVGAATETELKDRKLRIEDALNATKAAVAEGIVPGGGKTLIYLASKVDEIK-KNFDEEEKIGADIVKRALEAPLRQIADNAGAEGSVIVSRVKDSDFNIGYNAATGEFEDLIAAGIIDPAKVVRSALQNAASIAGLVLTTEAI 519          
BLAST of CX672017 vs. ExPASy Swiss-Prot
Match: CH601_ACAM1 (60 kDa chaperonin 1 OS=Acaryochloris marina (strain MBIC 11017) GN=groL1 PE=3 SV=1)

HSP 1 Score: 243.817 bits (621), Expect = 8.597e-64
Identity = 126/209 (60.29%), Postives = 164/209 (78.47%), Query Frame = -2
Query:  193 VEQLGTARKVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXXXKDSEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQAI 819
            +E LGTARKVTI KD+TTI+++AA+  ++  R+ QL+++L ETDS YD EKL ERIAKL+GGVAVIKVGAATETEL+DRKLRIEDA NAT AA+ EGIVPGGG  L+HL+  + ++K +L+D +E++GAD+V  AL AP + IA NA           +D++++ GYNAMTD YE+M+ AGV+DPAKV R  LQNA S+AGMVLTT+A+
Sbjct:  312 LEMLGTARKVTISKDNTTIVSEAANAGDVGKRVEQLRRQLDETDSEYDKEKLQERIAKLAGGVAVIKVGAATETELKDRKLRIEDALNATKAAVAEGIVPGGGTTLIHLTKTIESVKAQLKD-EEKVGADLVGIALEAPLTQIADNAGKEGAVVVEKVRDADFSYGYNAMTDTYEDMIAAGVVDPAKVVRSGLQNAGSIAGMVLTTEAL 519          
The following BLAST results are available for this feature:
BLAST of CX672017 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RUBA_PEA2.171e-9178.17RuBisCO large subunit-binding protein subunit alph... [more]
RUB1_BRANA2.171e-9179.04RuBisCO large subunit-binding protein subunit alph... [more]
RUBA_ARATH2.654e-8977.29RuBisCO large subunit-binding protein subunit alph... [more]
RUBA_WHEAT2.934e-8880.38RuBisCO large subunit-binding protein subunit alph... [more]
RUB2_BRANA5.180e-8576.42RuBisCO large subunit-binding protein subunit alph... [more]
RUBA_RICCO5.360e-8283.59RuBisCO large subunit-binding protein subunit alph... [more]
RUBA_CHLRE5.740e-7671.77RuBisCO large subunit-binding protein subunit alph... [more]
CH602_ANAVT1.732e-6462.6860 kDa chaperonin 2 OS=Anabaena variabilis (strain... [more]
CH602_ANASP8.597e-6462.2060 kDa chaperonin 2 OS=Anabaena sp. (strain PCC 71... [more]
CH601_ACAM18.597e-6460.2960 kDa chaperonin 1 OS=Acaryochloris marina (strai... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS10_14E02_g Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-14E02-I4-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX672017 ID=CX672017; Name=CX672017; organism=Citrus sinensis; type=EST; length=820bp
TTTTTTTTTTTTTTACAAAAAAGACACGATTTTATATCAATTAAGTAAAA
CTTGTCTTTTTCAGTTCACCGCAATAAAACCACTCTTTCATCTATAAAAC
TCCTAACTAAATCTGGAGAGTCCTAGAGATTACACCATAAGACCTTGTGG
CGGAGCGGCTACCGGAGTTTTGGGCTTTGGCTTCTCCACGACAATAGCCT
GAGTGGTCAGGACCATTCCTGCAACTGAAGCCGCATTCTGCAATGCACAT
CTTGTCACCTTTGCAGGATCAATAACTCCAGCCTGAAGCATGTTCTCATA
CTTGTCTGTCATTGCATTGTAACCAGTCGTCCATTCACTATCTTTCACCT
TCTCCACAACAACCTCACCTTCAACTCCAGCATTGTGAGCTATCAGTGAT
GCAGGTGCTACCAGTGCCTTCTGCACAATGTCAGCACCTAATCGCTCATC
TGCATCTTCAAGCTTGTCCTTGATAGCAGGAACATGATCAGACAGATGAA
CCAGAGCAGCACCACCACCAGGAACAATACCTTCCTCTATGGCTGCAAAA
GTTGCATTCTTGGCATCTTCAATACGGAGTTTACGGTCCTCAAGCTCAGT
TTCTGTGGCAGCTCCAACTTTAATAACAGCAACCCCGCCAGACAATTTAG
CAATTCTCTCAGCAAGTTTCTCTGAGTCATAAACAGAATCCGTCTCAGCC
AACTCCTTTTTCAGCTGTGCAATTCTAGCTTGTATTTCATCCTTTGATGC
AGCATCAGCAATAATGGTAGTGGAGTCCTTTCTGATGGTCACCTTTCTAG
CTGTACCTAGCTGCTCAACT
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