CX672013

Overview
NameCX672013
Unique NameCX672013
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length735
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig8076 contig Csv1_Contig8076:7..741. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CX672013 vs. ExPASy Swiss-Prot
Match: LIRP1_ORYSJ (Light-regulated protein OS=Oryza sativa subsp. japonica GN=LIR1 PE=2 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 6.778e-22
Identity = 54/114 (47.37%), Postives = 74/114 (64.91%), Query Frame = 1 
Query:  112 AIYTPKLVGSSL---ASRRSAIKV---AATTSNDPSTFDYNSAFSVFPAEACEVIGGDACSAEMYPEAKLKPEAKNDTSTTASESIEREYLEYNDTNTVFKGEACDDLGGTFCE 435
            A+    + G SL   A RR A++V   AA  + + +  DY+S  SVFP EAC++IGG+AC+ +MYPEAKL   A    S  A+E ++R+YL Y++  TVF  EACDDLGG FC+
Sbjct:   13 AVLPAAVKGRSLQIQAPRRVALRVRAAAAAVAVEAAEVDYSSNISVFPMEACDLIGGEACNVQMYPEAKLSSSAAVAVSRAAAEEVDRDYLSYDEPTTVFPEEACDDLGGEFCK 126
The following BLAST results are available for this feature:
BLAST of CX672013 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
LIRP1_ORYSJ6.778e-2247.37Light-regulated protein OS=Oryza sativa subsp. jap... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS10_14D12_g Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-14D12-G24-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX672013 ID=CX672013; Name=CX672013; organism=Citrus sinensis; type=EST; length=735bp
CGCAAAACACACAACATAAACACAACACAAATATTTAAAATGCAGGCTGC
TTTGAGCATTTCACCAACAACGCTTGTCCCTTTAACAACCTCCAAGAACT
TTTCCCAAGTGGCCATTTATACTCCAAAGCTAGTAGGCAGCTCACTTGCT
TCCAGACGCAGCGCAATCAAAGTAGCTGCTACAACAAGCAATGACCCGTC
CACATTTGATTACAATTCTGCCTTCTCGGTGTTTCCAGCAGAGGCATGTG
AGGTAATCGGTGGAGATGCGTGCTCGGCAGAGATGTATCCTGAGGCGAAG
TTGAAACCAGAGGCCAAGAACGACACATCAACAACTGCCTCAGAATCCAT
TGAGAGAGAGTATTTAGAGTACAACGATACAAACACGGTTTTCAAAGGAG
AGGCTTGTGATGATCTTGGAGGAACGTTCTGTGAACGCGAGTACCAGAGA
GGAGTCTACTAGAACTAGAAAGAACGTAATATCGGGAAACAACTATTTGA
TGCTTTTACTGTATATAGTTTACCCCAGTGAACTGGTGTGCATATGGTAC
AATTTCCTTTTTCTAAAATATTTTTATTTGATGCTGAAAAAAATCAAAAA
TGCCTTTGTGCTAAGCTAGTTCACACGATCTGTCTGTCAAGAGTTCAAGT
GTGGAAAGGGTAGTAATAAATTCAGAATTAATTTATGGTTAAAATTATTA
ATTAATATTTTAAGGGCATAAAAAAAAAAAAAAAA
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