CX672008

Overview
NameCX672008
Unique NameCX672008
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length807
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX672008 vs. ExPASy Swiss-Prot
Match: MNMA_BORGA (tRNA-specific 2-thiouridylase mnmA OS=Borrelia garinii GN=mnmA PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.893e-15
Identity = 47/130 (36.15%), Postives = 74/130 (56.92%), Query Frame = -1
Query:  424 LGTIPKEEVRKLATKFDLRNKDKKDSWGICFLGKIKFSEFVARHIG*WKVSYWKLRQGTSLKNIGDFGSTQL--VNTKN*VSLEDPEGYVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSLKLLSGLPPE 807
            LGT+ K EVR++A   +L NKD+KDS GICFLGKIK++EF+  H+G  K +  +   G   K IG         V  +  + L +   +V+EKD+E NI+++S N     + +  F    +  ++G+P +
Sbjct:  166 LGTLFKSEVRQIAKSINLPNKDRKDSQGICFLGKIKYNEFIKYHLGEKKGNIVEKETG---KIIGIHNGYWFFTVGQRRGIKLSNGPWFVIEKDLEKNIIYISHNENYLKQAKRKFLVHEIHWINGMPSD 292          
BLAST of CX672008 vs. ExPASy Swiss-Prot
Match: MNMA_BORT9 (tRNA-specific 2-thiouridylase mnmA OS=Borrelia turicatae (strain 91E135) GN=mnmA PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 5.508e-15
Identity = 46/117 (39.32%), Postives = 67/117 (57.26%), Query Frame = -1
Query:  463 LGTIPKEEVRKLATKFDLRNKDKKDSWGICFLGKIKFSEFVARHIG*WKVSYWKLRQGTSLKNIGDFGSTQLVNTKN*VSLEDPEGYVVEKDIENNIVFVSR--NYYSFDKKRHLFH 807
            LG + K E+R++A K DL NK++KDS GICFLGKIK+ EF+  H+G  K +  +   G  L     +    +   K  + L     +V EKDI+NNI+++S   NY    K++ L H
Sbjct:  166 LGDLLKTEIRQIAQKIDLPNKNRKDSQGICFLGKIKYDEFIKYHLGELKGNIIEQETGKILGTHNGYWFFTIGQRKG-IKLSHGPWFVTEKDIQNNIIYISNSINYLKQGKQQFLVH 281          
BLAST of CX672008 vs. ExPASy Swiss-Prot
Match: MNMA_BORBZ (tRNA-specific 2-thiouridylase mnmA OS=Borrelia burgdorferi (strain ZS7) GN=mnmA PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 5.508e-15
Identity = 48/119 (40.34%), Postives = 70/119 (58.82%), Query Frame = -1
Query:  463 LGTIPKEEVRKLATKFDLRNKDKKDSWGICFLGKIKFSEFVARHIG*WKVSYWKLRQGTSLKNIGDFGSTQL--VNTKN*VSLEDPEGYVVEKDIENNIVFVS--RNYYSFDKKRHLFH 807
            LGT+ K EVR++A   +L NKD+KDS GICFLGKIK++EF+  H+G  K +  +   G   K IG         V  +  + L +   +V+EKD+E NI+++S   NY    K++ L H
Sbjct:  166 LGTLLKSEVRQIAKNINLPNKDRKDSQGICFLGKIKYNEFIKYHLGEKKGNIIEKETG---KIIGIHNGYWFFTVGQRRGIKLSNGPWFVIEKDLEKNIIYISHNENYLKQAKRKFLVH 281          
BLAST of CX672008 vs. ExPASy Swiss-Prot
Match: MNMA_BORBU (tRNA-specific 2-thiouridylase mnmA OS=Borrelia burgdorferi GN=mnmA PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 5.508e-15
Identity = 48/119 (40.34%), Postives = 70/119 (58.82%), Query Frame = -1
Query:  463 LGTIPKEEVRKLATKFDLRNKDKKDSWGICFLGKIKFSEFVARHIG*WKVSYWKLRQGTSLKNIGDFGSTQL--VNTKN*VSLEDPEGYVVEKDIENNIVFVS--RNYYSFDKKRHLFH 807
            LGT+ K EVR++A   +L NKD+KDS GICFLGKIK++EF+  H+G  K +  +   G   K IG         V  +  + L +   +V+EKD+E NI+++S   NY    K++ L H
Sbjct:  166 LGTLLKSEVRQIAKNINLPNKDRKDSQGICFLGKIKYNEFIKYHLGEKKGNIIEKETG---KIIGIHNGYWFFTVGQRRGIKLSNGPWFVIEKDLEKNIIYISHNENYLKQAKRKFLVH 281          
BLAST of CX672008 vs. ExPASy Swiss-Prot
Match: MNMA_BORHD (tRNA-specific 2-thiouridylase mnmA OS=Borrelia hermsii (strain DAH) GN=mnmA PE=3 SV=2)

HSP 1 Score: 80.8777 bits (198), Expect = 9.395e-15
Identity = 46/117 (39.32%), Postives = 67/117 (57.26%), Query Frame = -1
Query:  463 LGTIPKEEVRKLATKFDLRNKDKKDSWGICFLGKIKFSEFVARHIG*WKVSYWKLRQGTSLKNIGDFGSTQLVNTKN*VSLEDPEGYVVEKDIENNIVFVSR--NYYSFDKKRHLFH 807
            LG + K E+R++A K DL NK++KDS GICFLGKIK+ EF+  H+G  K +  +   G  L     +    +   K  + L     +V EKDI+NNI+++S   NY +  K + L H
Sbjct:  166 LGDLLKTEIRQIAHKIDLPNKNRKDSQGICFLGKIKYDEFIKYHLGELKGNIIEQETGKILGTHNGYWFFTIGQRKG-IKLSHGPWFVTEKDIQNNIIYISNSVNYLAQGKHQFLVH 281          
BLAST of CX672008 vs. ExPASy Swiss-Prot
Match: MNMA_BORAP (tRNA-specific 2-thiouridylase mnmA OS=Borrelia afzelii (strain PKo) GN=mnmA PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 9.395e-15
Identity = 49/132 (37.12%), Postives = 76/132 (57.58%), Query Frame = -1
Query:  424 LGTIPKEEVRKLATKFDLRNKDKKDSWGICFLGKIKFSEFVARHIG*WKVSYWKLRQGTSLKNIGDFGSTQL--VNTKN*VSLEDPEGYVVEKDIENNIVFVS--RNYYSFDKKRHLFHAGSLKLLSGLPPE 807
            LGT+ K EVR++A   +L NK++KDS GICFLGKIK++EF+  H+G  K +  +   G   K IG         V  +  + L +   +V+EKD+E NI+++S   NY    K++ L H   +  ++G P +
Sbjct:  166 LGTLLKSEVRQIAKNINLPNKNRKDSQGICFLGKIKYNEFIKYHLGEKKGNIIEKETG---KIIGTHNGYWFFTVGQRRGIKLSNGPWFVIEKDLEKNIIYISHNENYSKQAKRKFLVH--EIHWINGTPSD 292          
BLAST of CX672008 vs. ExPASy Swiss-Prot
Match: MNMA_BORRA (tRNA-specific 2-thiouridylase mnmA OS=Borrelia recurrentis (strain A1) GN=mnmA PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.227e-14
Identity = 45/117 (38.46%), Postives = 68/117 (58.12%), Query Frame = -1
Query:  463 LGTIPKEEVRKLATKFDLRNKDKKDSWGICFLGKIKFSEFVARHIG*WKVSYWKLRQGTSLKNIGDFGSTQLVNTKN*VSLEDPEGYVVEKDIENNIVFVSR--NYYSFDKKRHLFH 807
            LG + K E+R++A + DL NK++KDS GICFLGKIK++EF+  H+G  K +  +   G  L     +    +   K  + L     +V EKDI+NNI+++S   NY    K++ L H
Sbjct:  166 LGDLLKSEIRQIAHEIDLPNKNRKDSQGICFLGKIKYNEFIKYHLGELKGNIIEQETGKILGTHNGYWFFTIGQRKG-IKLSHGPWFVTEKDIQNNIIYISNSTNYLKQGKEQFLVH 281          
BLAST of CX672008 vs. ExPASy Swiss-Prot
Match: MNMA_BORDL (tRNA-specific 2-thiouridylase mnmA OS=Borrelia duttonii (strain Ly) GN=mnmA PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.227e-14
Identity = 45/117 (38.46%), Postives = 68/117 (58.12%), Query Frame = -1
Query:  463 LGTIPKEEVRKLATKFDLRNKDKKDSWGICFLGKIKFSEFVARHIG*WKVSYWKLRQGTSLKNIGDFGSTQLVNTKN*VSLEDPEGYVVEKDIENNIVFVSR--NYYSFDKKRHLFH 807
            LG + K E+R++A + DL NK++KDS GICFLGKIK++EF+  H+G  K +  +   G  L     +    +   K  + L     +V EKDI+NNI+++S   NY    K++ L H
Sbjct:  166 LGDLLKSEIRQIAHEIDLPNKNRKDSQGICFLGKIKYNEFIKYHLGELKGNIIEQETGKILGTHNGYWFFTIGQRKG-IKLSHGPWFVTEKDIQNNIIYISNSTNYLKQGKEQFLVH 281          
The following BLAST results are available for this feature:
BLAST of CX672008 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
MNMA_BORGA1.893e-1536.15tRNA-specific 2-thiouridylase mnmA OS=Borrelia gar... [more]
MNMA_BORT95.508e-1539.32tRNA-specific 2-thiouridylase mnmA OS=Borrelia tur... [more]
MNMA_BORBZ5.508e-1540.34tRNA-specific 2-thiouridylase mnmA OS=Borrelia bur... [more]
MNMA_BORBU5.508e-1540.34tRNA-specific 2-thiouridylase mnmA OS=Borrelia bur... [more]
MNMA_BORHD9.395e-1539.32tRNA-specific 2-thiouridylase mnmA OS=Borrelia her... [more]
MNMA_BORAP9.395e-1537.12tRNA-specific 2-thiouridylase mnmA OS=Borrelia afz... [more]
MNMA_BORRA1.227e-1438.46tRNA-specific 2-thiouridylase mnmA OS=Borrelia rec... [more]
MNMA_BORDL1.227e-1438.46tRNA-specific 2-thiouridylase mnmA OS=Borrelia dut... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS10_14D10_b Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-14D10-G20-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX672008 ID=CX672008; Name=CX672008; organism=Citrus sinensis; type=EST; length=807bp
TTTTTTTTTTTTTTTAGGTTTTCAAAAGCCTTTGATCGAATGCGTTGAGC
TCATTGTTAGCAAAGCTTGAATTGTTGGACTATTAACGCTTGAGCTACAA
AGACATATTTGTTGAATCTAATTAAAGAGAAGCTATTGACTGCGCTGATT
GTTCTATTAAACCCTGGGGTTACAGAATCATTTCAAGTAATGAAAAAACA
TTTGATTTGAGCACCAAATCTTGCAACTCTCGATTGAACCCTTGCGAGAC
TCCGCCCTCAAATTGAGTCAACAGCTCACAAGTCCTCCTCGCTGCCACCA
TCTCCATCCAGAGCTTTCAAAGCCTTTGTGAGTCTCTTGACATGCTCTTG
TGTCGAGACCCACCGAGTCAAGAAGCTTTTGAGGCTATTAACGCTTGACC
TTACACTGAAGCTGACTGATCTTCTCTGGAGGCAATCCACTAAGCAATTT
CAAAGAGCCAGCATGAAATAGATGTCGTTTCTTGTCAAATGAATAGTAAT
TTCTTGACACAAACACTATATTGTTCTCAATATCCTTCTCAACAACATAC
CCCTCAGGGTCCTCCAAGGAGACCTAGTTCTTGGTGTTGACCAATTGTGT
AGAACCAAAATCCCCGATGTTTTTCAAGGAAGTCCCCTGTCTCAGCTTCC
AATATGATACCTTCCACTACCCAATGTGTCTGGCAACAAATTCACTAAAT
TTTATCTTCCCCAGGAAGCAGATTCCCCATGAATCCTTTTTATCCTTGTT
ACGCAGATCAAATTTTGTAGCAAGCTTGCGAACTTCTTCCTTGGGTATGG
TACCAAG
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