CX671996

Overview
NameCX671996
Unique NameCX671996
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length886
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX671996_ssr367 microsatellite CX671996_ssr367:367..378. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig13759 contig Csv1_Contig13759:426..1269. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX671996 vs. ExPASy Swiss-Prot
Match: GBLP_MEDSA (Guanine nucleotide-binding protein subunit beta-like protein OS=Medicago sativa GN=GB1 PE=2 SV=1)

HSP 1 Score: 368.622 bits (945), Expect = 2.611e-101
Identity = 178/210 (84.76%), Postives = 187/210 (89.05%), Query Frame = -1
Query:  257 RQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGAVIHALCFSPNRYWLCAATEQSIKIWDLESKSIVEDLKVDLXXXXXXXXXXXXXXXXXXKNIYCTSLNWSADGSTLFSGYTDGVIRVWGIGRY 886
            RQIVSASRDRTIKLWNTLGECKYTIQ+GDAH++WVSCVRFSP+T QPTIVSASWDRTVKVWNL+NCKLR TLAGH+GYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAG++IHALCFSPNRYWLCAATE SIKIWDLESKSIVEDLKVDL                    IYCTSLNWSADGSTLFSGYTDGV+RVWGIGRY
Sbjct:  118 RQIVSASRDRTIKLWNTLGECKYTIQDGDAHSDWVSCVRFSPSTPQPTIVSASWDRTVKVWNLTNCKLRNTLAGHSGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGSIIHALCFSPNRYWLCAATESSIKIWDLESKSIVEDLKVDLKTEADAAIGGDTTTKKKV--IYCTSLNWSADGSTLFSGYTDGVVRVWGIGRY 325          
BLAST of CX671996 vs. ExPASy Swiss-Prot
Match: GBLP_SOYBN (Guanine nucleotide-binding protein subunit beta-like protein OS=Glycine max PE=2 SV=1)

HSP 1 Score: 367.081 bits (941), Expect = 7.596e-101
Identity = 178/210 (84.76%), Postives = 186/210 (88.57%), Query Frame = -1
Query:  257 RQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGAVIHALCFSPNRYWLCAATEQSIKIWDLESKSIVEDLKVDLXXXXXXXXXXXXXXXXXXKNIYCTSLNWSADGSTLFSGYTDGVIRVWGIGRY 886
            RQIVSASRDRTIKLWNTLGECKYTIQ+GDAH++WVSCVRFSP+TLQPTIVSASWDRTVKVWNL+NCKLR TLAGH GYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAG++IHALCFSP+RYWLCAATEQSIKIWDLESKSIVEDLKVDL                    IYCTSLNWSADGSTLFSGYTDGV RVW IGRY
Sbjct:  118 RQIVSASRDRTIKLWNTLGECKYTIQDGDAHSDWVSCVRFSPSTLQPTIVSASWDRTVKVWNLTNCKLRNTLAGHNGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGSIIHALCFSPSRYWLCAATEQSIKIWDLESKSIVEDLKVDLKTEADATSGGGNANKKKV--IYCTSLNWSADGSTLFSGYTDGVARVWAIGRY 325          
BLAST of CX671996 vs. ExPASy Swiss-Prot
Match: GBLP_ARATH (Guanine nucleotide-binding protein subunit beta-like protein OS=Arabidopsis thaliana GN=ARCA PE=1 SV=2)

HSP 1 Score: 358.607 bits (919), Expect = 2.702e-98
Identity = 175/211 (82.94%), Postives = 184/211 (87.20%), Query Frame = -1
Query:  257 RQIVSASRDRTIKLWNTLGECKYTIQEG-DAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGAVIHALCFSPNRYWLCAATEQSIKIWDLESKSIVEDLKVDLXXXXXXXXXXXXXXXXXXKNIYCTSLNWSADGSTLFSGYTDGVIRVWGIGRY 886
            RQIVSASRDRTIKLWNTLGECKYTI EG + H +WVSCVRFSPNTLQPTIVSASWD+TVKVWNLSNCKLR+TLAGHTGYV+TVAVSPDGSLCASGGKDGV+LLWDLAEGK+LYSL+A +VIHALCFSPNRYWLCAATE  IKIWDLESKSIVEDLKVDL                    IYCTSLNWSADGSTLFSGYTDGVIRVWGIGRY
Sbjct:  118 RQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLEANSVIHALCFSPNRYWLCAATEHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKV-IYCTSLNWSADGSTLFSGYTDGVIRVWGIGRY 327          
BLAST of CX671996 vs. ExPASy Swiss-Prot
Match: GBLP_BRANA (Guanine nucleotide-binding protein subunit beta-like protein OS=Brassica napus GN=GB1 PE=2 SV=1)

HSP 1 Score: 352.829 bits (904), Expect = 1.482e-96
Identity = 172/211 (81.52%), Postives = 184/211 (87.20%), Query Frame = -1
Query:  257 RQIVSASRDRTIKLWNTLGECKYTIQEG-DAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGAVIHALCFSPNRYWLCAATEQSIKIWDLESKSIVEDLKVDLXXXXXXXXXXXXXXXXXXKNIYCTSLNWSADGSTLFSGYTDGVIRVWGIGRY 886
            RQIVSASRDRTIKLWNTLGECKYTI EG + H +WVSCVRFSPNTLQPTIVSAS D+TVKVWNLSNCKLR+TLAGHTGYV+TVAVSPDGSLCASGGKDGV+LLWDLAEGK+LYSL+A +VIHALCF+PNRYWLCAATEQ IKIWDLESK++VEDLKVDL                    IYCTSLNWSADGSTLFSGYTDGVIRVWGIGRY
Sbjct:  118 RQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASCDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLEANSVIHALCFTPNRYWLCAATEQGIKIWDLESKTVVEDLKVDLKAEAEKSDGSGTAATKRKV-IYCTSLNWSADGSTLFSGYTDGVIRVWGIGRY 327          
BLAST of CX671996 vs. ExPASy Swiss-Prot
Match: GBLP_TOBAC (Guanine nucleotide-binding protein subunit beta-like protein OS=Nicotiana tabacum GN=ARCA PE=2 SV=1)

HSP 1 Score: 352.443 bits (903), Expect = 1.936e-96
Identity = 166/210 (79.05%), Postives = 184/210 (87.62%), Query Frame = -1
Query:  257 RQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGAVIHALCFSPNRYWLCAATEQSIKIWDLESKSIVEDLKVDLXXXXXXXXXXXXXXXXXXKNIYCTSLNWSADGSTLFSGYTDGVIRVWGIGRY 886
            RQIVSASRD++I+LWNTLGECKYTIQ+GD+H++WVSCVRFSPN LQPTIVS SWDRTVK+WNL+NCKLR TLAGHTGYVNT AVSPDGSLCASGGKDGVILLWDLAEGK+LYSL++G++IH+LCFSPNRYWLCAATE SIKIWDLESKSIV+DLKVDL                    IYCTSL+WSADGSTLFSGYTDG+IRVWGI RY
Sbjct:  119 RQIVSASRDKSIRLWNTLGECKYTIQDGDSHSDWVSCVRFSPNNLQPTIVSGSWDRTVKIWNLTNCKLRLTLAGHTGYVNTPAVSPDGSLCASGGKDGVILLWDLAEGKKLYSLESGSIIHSLCFSPNRYWLCAATESSIKIWDLESKSIVDDLKVDLKQESEMSSEGTASGKNKV--IYCTSLSWSADGSTLFSGYTDGLIRVWGIDRY 326          
BLAST of CX671996 vs. ExPASy Swiss-Prot
Match: GBLP_NICPL (Guanine nucleotide-binding protein subunit beta-like protein OS=Nicotiana plumbaginifolia PE=2 SV=1)

HSP 1 Score: 352.443 bits (903), Expect = 1.936e-96
Identity = 165/210 (78.57%), Postives = 184/210 (87.62%), Query Frame = -1
Query:  257 RQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGAVIHALCFSPNRYWLCAATEQSIKIWDLESKSIVEDLKVDLXXXXXXXXXXXXXXXXXXKNIYCTSLNWSADGSTLFSGYTDGVIRVWGIGRY 886
            RQIVSASRD++I+LWNTLGECKY IQ+GD+H++WVSCVRFSPN LQPTIVS SWDRTVK+WNL+NCKLRATLAGHTGYVNT AVSPDGSLCASGGKDGVILLWDLAEGK+LYSL++G++IH+LCFSPNRYWLCAATE SIKIWDLESK+IV+DLKVDL                    IYCTSL WSADGSTLFSGYTDG+IRVWGIGR+
Sbjct:  119 RQIVSASRDKSIRLWNTLGECKYIIQDGDSHSDWVSCVRFSPNNLQPTIVSGSWDRTVKIWNLTNCKLRATLAGHTGYVNTTAVSPDGSLCASGGKDGVILLWDLAEGKKLYSLESGSIIHSLCFSPNRYWLCAATESSIKIWDLESKTIVDDLKVDLKQESEMSAEGTASGKNKV--IYCTSLGWSADGSTLFSGYTDGLIRVWGIGRF 326          
BLAST of CX671996 vs. ExPASy Swiss-Prot
Match: GBLP_ORYSJ (Guanine nucleotide-binding protein subunit beta-like protein OS=Oryza sativa subsp. japonica GN=Os01g0686800 PE=1 SV=1)

HSP 1 Score: 319.316 bits (817), Expect = 1.816e-86
Identity = 155/214 (72.43%), Postives = 170/214 (79.44%), Query Frame = -1
Query:  257 RQIVSASRDRTIKLWNTLGECKYTIQE----GDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGAVIHALCFSPNRYWLCAATEQSIKIWDLESKSIVEDLKVDLXXXXXXXXXXXXXXXXXXKNIYCTSLNWSADGSTLFSGYTDGVIRVWGIGRY 886
            RQIVSASRDRTIKLWNTLGECKYTI      G+ H  WVSCVRFSPNT QPTIVS SWDRTVKVWNL+NCKLR  L GH GYVN VAVSPDGSLCASGGKDGV LLWDLAEGKRLYSLDAG++IH+LCFSPNRYWLCAAT+ SIKIWDLESK IV+DLK ++                    +YCTSLNWSADGSTL++GYTDG IR++ I  +
Sbjct:  130 RQIVSASRDRTIKLWNTLGECKYTIGGDLGGGEGHNGWVSCVRFSPNTFQPTIVSGSWDRTVKVWNLTNCKLRCNLEGHGGYVNAVAVSPDGSLCASGGKDGVTLLWDLAEGKRLYSLDAGSIIHSLCFSPNRYWLCAATQDSIKIWDLESKHIVQDLKPEIPVSKNQM-------------LYCTSLNWSADGSTLYAGYTDGTIRIYKISGF 330          
BLAST of CX671996 vs. ExPASy Swiss-Prot
Match: GBLP_CHLRE (Guanine nucleotide-binding protein subunit beta-like protein OS=Chlamydomonas reinhardtii GN=GBLP PE=2 SV=1)

HSP 1 Score: 310.842 bits (795), Expect = 6.461e-84
Identity = 148/208 (71.15%), Postives = 161/208 (77.40%), Query Frame = -1
Query:  263 RQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGAVIHALCFSPNRYWLCAATEQSIKIWDLESKSIVEDLKVDLXXXXXXXXXXXXXXXXXXKNIYCTSLNWSADGSTLFSGYTDGVIRVWGIG 886
            RQIVS SRD+TIKLWNTLGECKYTI E + HTEWVSCVRFSP T  P IVS  WD+ VKVWNL+NCKL+  L GH GYVNTV VSPDGSLCASGGKDG+ +LWDLAEGKRLYSLDAG VIH LCFSPNRYWLCAAT+ SIKIWDLESKSIV+DL+ +                      YC SL WSADGSTL+SGYTDG IRVW +G
Sbjct:  119 RQIVSGSRDKTIKLWNTLGECKYTIGEPEGHTEWVSCVRFSPMTTNPIIVSGGWDKMVKVWNLTNCKLKNNLVGHHGYVNTVTVSPDGSLCASGGKDGIAMLWDLAEGKRLYSLDAGDVIHCLCFSPNRYWLCAATQSSIKIWDLESKSIVDDLRPEFNITSKKAQVP-----------YCVSLAWSADGSTLYSGYTDGQIRVWAVG 315          
BLAST of CX671996 vs. ExPASy Swiss-Prot
Match: GBLP_DANRE (Guanine nucleotide-binding protein subunit beta-2-like 1 OS=Danio rerio GN=gnb2l1 PE=2 SV=1)

HSP 1 Score: 284.648 bits (727), Expect = 4.958e-76
Identity = 137/207 (66.18%), Postives = 155/207 (74.88%), Query Frame = -1
Query:  266 RQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGAVIHALCFSPNRYWLCAATEQSIKIWDLESKSIVEDLKVDLXXXXXXXXXXXXXXXXXXKNIYCTSLNWSADGSTLFSGYTDGVIRVWGI 886
            RQIVS SRD+TIKLWNTLG CKYTIQ+ D+HTEWVSCVRFSPN+  P IVS  WD+ VKVWNL+NCKL+    GHTGY+NTV VSPDGSLCASGGKDG  +LWDL EGK LY+LD G  I+ALCFSPNRYWLCAAT  SIKIWDLE K IV++L+ D+                      CTSL WSADG TLF+GYTD +IRVW +
Sbjct:  118 RQIVSGSRDKTIKLWNTLGVCKYTIQD-DSHTEWVSCVRFSPNSSNPIIVSCGWDKMVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGDTINALCFSPNRYWLCAATGPSIKIWDLEGKIIVDELRQDIITTNSKAEPP-----------QCTSLAWSADGQTLFAGYTDNLIRVWQV 312          
BLAST of CX671996 vs. ExPASy Swiss-Prot
Match: GBLP_ORENI (Guanine nucleotide-binding protein subunit beta-2-like 1 OS=Oreochromis niloticus GN=gnb2l1 PE=2 SV=1)

HSP 1 Score: 282.722 bits (722), Expect = 1.884e-75
Identity = 136/207 (65.70%), Postives = 156/207 (75.36%), Query Frame = -1
Query:  266 RQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGAVIHALCFSPNRYWLCAATEQSIKIWDLESKSIVEDLKVDLXXXXXXXXXXXXXXXXXXKNIYCTSLNWSADGSTLFSGYTDGVIRVWGI 886
            RQIVS SRD+TIKLWNTLG CKYTIQ+ + HTEWVSCVRFSPN+  P IVS  WD+ VKVWNL+NCKL+    GHTGY+NTV VSPDGSLCASGGKDG  +LWDL EGK LY+LD+G VI+ALCFSPNRYWLCAAT  SIKIWDLE K IV++L+ ++                      CTSL WSADG TLF+GYTD +IRVW +
Sbjct:  118 RQIVSGSRDKTIKLWNTLGVCKYTIQD-EGHTEWVSCVRFSPNSSNPIIVSCGWDKMVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDSGDVINALCFSPNRYWLCAATGPSIKIWDLEGKIIVDELRQEVISTNSKAEPP-----------QCTSLAWSADGQTLFAGYTDNLIRVWQV 312          
The following BLAST results are available for this feature:
BLAST of CX671996 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 162
Match NameE-valueIdentityDescription
GBLP_MEDSA2.611e-10184.76Guanine nucleotide-binding protein subunit beta-li... [more]
GBLP_SOYBN7.596e-10184.76Guanine nucleotide-binding protein subunit beta-li... [more]
GBLP_ARATH2.702e-9882.94Guanine nucleotide-binding protein subunit beta-li... [more]
GBLP_BRANA1.482e-9681.52Guanine nucleotide-binding protein subunit beta-li... [more]
GBLP_TOBAC1.936e-9679.05Guanine nucleotide-binding protein subunit beta-li... [more]
GBLP_NICPL1.936e-9678.57Guanine nucleotide-binding protein subunit beta-li... [more]
GBLP_ORYSJ1.816e-8672.43Guanine nucleotide-binding protein subunit beta-li... [more]
GBLP_CHLRE6.461e-8471.15Guanine nucleotide-binding protein subunit beta-li... [more]
GBLP_DANRE4.958e-7666.18Guanine nucleotide-binding protein subunit beta-2-... [more]
GBLP_ORENI1.884e-7565.70Guanine nucleotide-binding protein subunit beta-2-... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS10_14D04_b Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-14D04-G8-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX671996 ID=CX671996; Name=CX671996; organism=Citrus sinensis; type=EST; length=886bp
TTGACAAGAAGTAAACTACAGTTTATAATTAAACAAAACCGGATGTAATG
TAACACATCTAAAATAATAATAAGCCAAACCAAAACAGCAGAGGCCTCAA
AGCCATATAAGATCCAAATAAAGAGAACAAAATATCCTTAAAAACATTTT
GAACAAAATCTTAAATCTTAAATAGGTCTGAAACTGCCTACAAAGTCGAG
AAACTAGTTTGTAATCGAAAAAGAACAGCAGTTTGCAATTACTCAAGCAG
TTTTCAATAACGGCCAATACCCCAGACTCTGATCACACCATCTGTATAAC
CACTGAACAAGGTGCTTCCATCAGCACTCCAGTTCAAGCTTGTGCAGTAA
ATGTTCTTCTTTTTTATGGTGGTGGTGGCGGTGGTGGCCTCAGATTTCTC
GGCCTCGGTCTTAAGATCAACCTTAAGATCCTCGACAATGCTCTTGCTCT
CCAAATCCCAGATCTTTATACTCTGCTCAGTCGCCGCACACAACCAATAC
CTATTAGGACTGAAGCAGAGCGCGTGAATGACAGCACCAGCGTCGAGCGA
GTAGAGTCTTTTTCCCTCAGCCAAATCCCACAACAGAATCACACCATCTT
TCCCTCCACTGGCACACAACGAACCATCCGGCGACACTGCGACGGTGTTC
ACGTATCCAGTGTGCCCGGCAAGAGTAGCCCTAAGCTTGCAGTTGCTCAA
ATTCCACACTTTGACCGTACGGTCCCACGAGGCGGAAACGATAGTGGGCT
GAAGCGTGTTGGGGCTGAACCTAACACAAGAAACCCACTCAGTGTGAGCG
TCTCCCTCTTGAATCGTGTACTTGCACTCGCCGAGCGTGTTCCACAACTT
GATCGTACGGTCACGAGAGGCCGATACAATCTGACG
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