CX671993

Overview
NameCX671993
Unique NameCX671993
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length477
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig11693 contig Csv1_Contig11693:530..1006. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX671993 vs. ExPASy Swiss-Prot
Match: SRG1_ARATH (Protein SRG1 OS=Arabidopsis thaliana GN=SRG1 PE=2 SV=1)

HSP 1 Score: 202.216 bits (513), Expect = 9.572e-52
Identity = 94/160 (58.75%), Postives = 131/160 (81.88%), Query Frame = -3
Query:    2 LPLPFRDDWEVYSTEIKNLTLKILDQMAKALRMDPNDMEELFEN--GMQAFRMNYYPPCLQPEKVVGHNSHCDASALTVLLQINEMDGLQIKKDGKWVAVKPLPDAFVVNIGDVLEILTNGTYPSIEHRATVNSVKERLSLATFYSLKLDGELGPATSLI 475
            LPLPFRD  E+YS+E++++   ++ +MA+AL + P ++E+LF++   +Q+ RMNYYPPC QP++V+G   H D+  LTVL+Q+N+++GLQIKKDGKWV VKPLP+AF+VNIGDVLEI+TNGTY SIEHR  VNS KERLS+ATF+++ +  E+GPA SL+
Sbjct:  163 LPLPFRDTLEMYSSEVQSVAKILIAKMARALEIKPEELEKLFDDVDSVQSMRMNYYPPCPQPDQVIGLTPHSDSVGLTVLMQVNDVEGLQIKKDGKWVPVKPLPNAFIVNIGDVLEIITNGTYRSIEHRGVVNSEKERLSIATFHNVGMYKEVGPAKSLV 322          
BLAST of CX671993 vs. ExPASy Swiss-Prot
Match: NCS1_COPJA (S-norcoclaurine synthase 1 OS=Coptis japonica GN=NCS1 PE=1 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 5.651e-28
Identity = 64/157 (40.76%), Postives = 96/157 (61.15%), Query Frame = -3
Query:    2 PLPFRDDWEVYSTEIKNLTLKILDQMAKALRMDPNDMEELFENGMQAFRMNYYPPCLQPEKVVGHNSHCDASALTVLLQINEMDGLQIKKDGKWVAVKPLPDAFVVNIGDVLEILTNGTYPSIEHRATVNSVKERLSLATFYSLKLDGELGPATSLI 472
            P  FR+  E YS E++ + + +   MAK L ++   + +              P      + +G + H DA+ LT+L+Q+NE++GL IKKD KWV +KP+  AFVVNIGDV+EI++NG Y SIEHRA +N+ KERLS+A F+  +   ++GP   L+
Sbjct:  162 PTSFRETMEKYSMELQKVAMCLTGMMAKNLGLESEILTKPLRTVFNR-EDELLPSMSSCGEGLGLSPHSDATGLTLLIQVNEVNGLHIKKDEKWVPIKPILGAFVVNIGDVIEIMSNGIYKSIEHRAVINTDKERLSIAAFHDPEYGTKIGPLPDLV 317          
BLAST of CX671993 vs. ExPASy Swiss-Prot
Match: GAOX3_ARATH (Gibberellin 20 oxidase 3 OS=Arabidopsis thaliana GN=20ox3 PE=2 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 1.259e-27
Identity = 62/150 (41.33%), Postives = 91/150 (60.67%), Query Frame = -3
Query:    2 WEVYSTEIKNLTLKILDQMAKALRMDPNDMEELFENGMQAFRMNYYPPCLQPEKVVGHNSHCDASALTVLLQINEMDGLQIKKDGKWVAVKPLPDAFVVNIGDVLEILTNGTYPSIEHRATVNSVKERLSLATFYSLKLDGELGPATSLI 451
            ++ Y+  +  L+LKI++ +  +L ++    +E FE+    FR+NYYP C QPE  +G   HCD ++LT+L Q +++ GLQ+  D KW ++ P P AFVVNIGD    LTNG Y S  HRA VNS +ER + A F   K +  + P   L+
Sbjct:  186 YQEYAEAMNTLSLKIMELLGMSLGVERRYFKEFFEDSDSIFRLNYYPQCKQPELALGTGPHCDPTSLTILHQ-DQVGGLQVFVDNKWQSIPPNPHAFVVNIGDTFMALTNGRYKSCLHRAVVNSERERKTFAFFLCPKGEKVVKPPEELV 334          
BLAST of CX671993 vs. ExPASy Swiss-Prot
Match: GAOX2_ORYSJ (Gibberellin 20 oxidase 2 OS=Oryza sativa subsp. japonica GN=20ox2 PE=1 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 2.805e-27
Identity = 61/148 (41.22%), Postives = 89/148 (60.14%), Query Frame = -3
Query:    8 WEVYSTEIKNLTLKILDQMAKALRMDPNDMEELFENGMQAFRMNYYPPCLQPEKVVGHNSHCDASALTVLLQINEMDGLQIKKDGKWVAVKPLPDAFVVNIGDVLEILTNGTYPSIEHRATVNSVKERLSLATFYSLKLDGELGPATS 451
            ++ Y  E+K L+L I++ +  +L ++     E F +     R NYYPPC +PE+ +G   HCD +ALT+LLQ +++ GL++  DG+W  V P+P A V+NIGD    L+NG Y S  HRA VN  +ER SLA F   + D  + P  S
Sbjct:  189 YQKYCEEMKELSLTIMELLELSLGVERGYYREFFADSSSIMRCNYYPPCPEPERTLGTGPHCDPTALTILLQ-DDVGGLEVLVDGEWRPVSPVPGAMVINIGDTFMALSNGRYKSCLHRAVVNQRRERRSLAFFLCPREDRVVRPPPS 335          
BLAST of CX671993 vs. ExPASy Swiss-Prot
Match: GAOX2_ORYSI (Gibberellin 20 oxidase 2 OS=Oryza sativa subsp. indica GN=20ox2 PE=1 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 2.805e-27
Identity = 61/148 (41.22%), Postives = 89/148 (60.14%), Query Frame = -3
Query:    8 WEVYSTEIKNLTLKILDQMAKALRMDPNDMEELFENGMQAFRMNYYPPCLQPEKVVGHNSHCDASALTVLLQINEMDGLQIKKDGKWVAVKPLPDAFVVNIGDVLEILTNGTYPSIEHRATVNSVKERLSLATFYSLKLDGELGPATS 451
            ++ Y  E+K L+L I++ +  +L ++     E F +     R NYYPPC +PE+ +G   HCD +ALT+LLQ +++ GL++  DG+W  V P+P A V+NIGD    L+NG Y S  HRA VN  +ER SLA F   + D  + P  S
Sbjct:  189 YQKYCEEMKELSLTIMELLELSLGVERGYYREFFADSSSIMRCNYYPPCPEPERTLGTGPHCDPTALTILLQ-DDVGGLEVLVDGEWRPVSPVPGAMVINIGDTFMALSNGRYKSCLHRAVVNQRRERRSLAFFLCPREDRVVRPPPS 335          
BLAST of CX671993 vs. ExPASy Swiss-Prot
Match: GAOX1_ARATH (Gibberellin 20 oxidase 1 OS=Arabidopsis thaliana GN=20ox1 PE=2 SV=2)

HSP 1 Score: 119.398 bits (298), Expect = 8.160e-27
Identity = 61/155 (39.35%), Postives = 92/155 (59.35%), Query Frame = -3
Query:    2 PFRDDWEVYSTEIKNLTLKILDQMAKALRMDPNDMEELFENGMQAFRMNYYPPCLQPEKVVGHNSHCDASALTVLLQINEMDGLQIKKDGKWVAVKPLPDAFVVNIGDVLEILTNGTYPSIEHRATVNSVKERLSLATFYSLKLDGELGPATSLI 466
            PF   ++ Y   + +L+LKI++ +  +L +  +   E FE      R+NYYPPC++P+  +G   HCD ++LT+L Q + ++GLQ+  + +W +++P P AFVVNIGD    L+N  Y S  HRA VNS  ER SLA F   K D  + P   L+
Sbjct:  182 PFGKVYQEYCEAMSSLSLKIMELLGLSLGVKRDYFREFFEENDSIMRLNYYPPCIKPDLTLGTGPHCDPTSLTILHQ-DHVNGLQVFVENQWRSIRPNPKAFVVNIGDTFMALSNDRYKSCLHRAVVNSESERKSLAFFLCPKKDRVVTPPRELL 335          
BLAST of CX671993 vs. ExPASy Swiss-Prot
Match: GAO1B_WHEAT (Gibberellin 20 oxidase 1-B OS=Triticum aestivum GN=GA20ox1B PE=2 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 1.818e-26
Identity = 59/147 (40.14%), Postives = 89/147 (60.54%), Query Frame = -3
Query:    2 YSTEIKNLTLKILDQMAKALRMDPNDMEELFENGMQAFRMNYYPPCLQPEKVVGHNSHCDASALTVLLQINEMDGLQIKKDGKWVAVKPLPDAFVVNIGDVLEILTNGTYPSIEHRATVNSVKERLSLATFYSLKLDGELGPATSLI 442
            Y +E+  L+L+I++ + ++L +        FE      R+NYYPPC +P + +G   HCD ++LT+L Q N + GLQ+  +G+W +++P  DAFVVNIGD    L+NG Y S  HRA VNS   R SLA F   ++D  + P  +L+
Sbjct:  167 YCSEMSRLSLEIMEVLGESLGVGRAHYRRFFEGNDSIMRLNYYPPCQRPMETLGTGPHCDPTSLTILHQDN-VGGLQVHTEGRWRSIRPRADAFVVNIGDTFMALSNGRYKSCLHRAVVNSKVPRKSLAFFLCPEMDKVVAPPGTLV 312          
BLAST of CX671993 vs. ExPASy Swiss-Prot
Match: GAO1D_WHEAT (Gibberellin 20 oxidase 1-D OS=Triticum aestivum GN=GA20ox1D PE=1 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 3.101e-26
Identity = 59/147 (40.14%), Postives = 89/147 (60.54%), Query Frame = -3
Query:    2 YSTEIKNLTLKILDQMAKALRMDPNDMEELFENGMQAFRMNYYPPCLQPEKVVGHNSHCDASALTVLLQINEMDGLQIKKDGKWVAVKPLPDAFVVNIGDVLEILTNGTYPSIEHRATVNSVKERLSLATFYSLKLDGELGPATSLI 442
            Y +E+  L+L+I++ + ++L +        FE      R+NYYPPC +P + +G   HCD ++LT+L Q N + GLQ+  +G+W +++P  DAFVVNIGD    L+NG Y S  HRA VNS   R SLA F   ++D  + P  +L+
Sbjct:  167 YCSEMSRLSLEIMEVLGESLGVGRAHYRRFFEGNDSIMRLNYYPPCQRPLETLGTGPHCDPTSLTILHQDN-VGGLQVHTEGRWRSIRPRADAFVVNIGDTFMALSNGRYKSCLHRAVVNSRVPRKSLAFFLCPEMDKVVAPPGTLV 312          
BLAST of CX671993 vs. ExPASy Swiss-Prot
Match: GAO1A_WHEAT (Gibberellin 20 oxidase 1-A OS=Triticum aestivum GN=GA20ox1A PE=2 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 3.101e-26
Identity = 59/147 (40.14%), Postives = 89/147 (60.54%), Query Frame = -3
Query:    2 YSTEIKNLTLKILDQMAKALRMDPNDMEELFENGMQAFRMNYYPPCLQPEKVVGHNSHCDASALTVLLQINEMDGLQIKKDGKWVAVKPLPDAFVVNIGDVLEILTNGTYPSIEHRATVNSVKERLSLATFYSLKLDGELGPATSLI 442
            Y +E+  L+L+I++ + ++L +        FE      R+NYYPPC +P + +G   HCD ++LT+L Q N + GLQ+  +G+W +++P  DAFVVNIGD    L+NG Y S  HRA VNS   R SLA F   ++D  + P  +L+
Sbjct:  167 YCSEMSRLSLEIMEVLGESLGVGRAHYRRFFEGNDSIMRLNYYPPCQRPLETLGTGPHCDPTSLTILHQDN-VGGLQVHTEGRWRSIRPRADAFVVNIGDTFMALSNGRYKSCLHRAVVNSRVPRKSLAFFLCPEMDKVVAPPGTLV 312          
BLAST of CX671993 vs. ExPASy Swiss-Prot
Match: ACCO1_DORSP (1-aminocyclopropane-1-carboxylate oxidase 1 OS=Doritaenopsis sp. GN=ACO1 PE=2 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 4.478e-25
Identity = 55/158 (34.81%), Postives = 99/158 (62.66%), Query Frame = -3
Query:    2 RDDWEVYSTEIKNLTLKILDQMAKALRMDPNDMEELF---ENGMQAF--RMNYYPPCLQPEKVVGHNSHCDASALTVLLQINEMDGLQIKKDGKWVAVKPLPDAFVVNIGDVLEILTNGTYPSIEHRATVNSVKERLSLATFYSLKLDGELGPATSLI 460
            R   + ++ E++NL  ++LD + + L ++   ++++F    +G+  F  +++ YPPC +PE + G  +H DA  + +L Q +++ GLQ+ KDG+W+ V P+  + VVNIGD LE++TNG Y S+ HR    +   R+S+A+FY+   D  + PA +L+
Sbjct:  113 RSTMKEFALELENLAERLLDLLCEDLGLEKGYLKKVFCGGSDGLPTFGTKVSNYPPCPKPELIKGLRAHTDAGGIILLFQDDKVSGLQLLKDGEWIDVPPVRHSIVVNIGDQLEVITNGKYKSVLHRVVAQTDGNRMSIASFYNPGSDAVIFPAPALV 270          
The following BLAST results are available for this feature:
BLAST of CX671993 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 85
Match NameE-valueIdentityDescription
SRG1_ARATH9.572e-5258.75Protein SRG1 OS=Arabidopsis thaliana GN=SRG1 PE=2 ... [more]
NCS1_COPJA5.651e-2840.76S-norcoclaurine synthase 1 OS=Coptis japonica GN=N... [more]
GAOX3_ARATH1.259e-2741.33Gibberellin 20 oxidase 3 OS=Arabidopsis thaliana G... [more]
GAOX2_ORYSJ2.805e-2741.22Gibberellin 20 oxidase 2 OS=Oryza sativa subsp. ja... [more]
GAOX2_ORYSI2.805e-2741.22Gibberellin 20 oxidase 2 OS=Oryza sativa subsp. in... [more]
GAOX1_ARATH8.160e-2739.35Gibberellin 20 oxidase 1 OS=Arabidopsis thaliana G... [more]
GAO1B_WHEAT1.818e-2640.14Gibberellin 20 oxidase 1-B OS=Triticum aestivum GN... [more]
GAO1D_WHEAT3.101e-2640.14Gibberellin 20 oxidase 1-D OS=Triticum aestivum GN... [more]
GAO1A_WHEAT3.101e-2640.14Gibberellin 20 oxidase 1-A OS=Triticum aestivum GN... [more]
ACCO1_DORSP4.478e-2534.811-aminocyclopropane-1-carboxylate oxidase 1 OS=Dor... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS10_14D02_g Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-14D02-G4-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX671993 ID=CX671993; Name=CX671993; organism=Citrus sinensis; type=EST; length=477bp
CAATAAGACTTGTTGCCGGACCCAATTCTCCATCTAATTTTAGGCTGTAA
AATGTAGCTAAAGATAATCTTTCCTTCACTGAGTTTACAGTTGCGCGATG
TTCAATACTAGGATAAGTTCCATTGGTTAATATCTCTAAAACGTCACCAA
TGTTGACTACAAAGGCATCCGGAAGGGGTTTAACAGCAACCCATTTTCCA
TCTTTCTTAATTTGGAGACCATCCATCTCATTGATTTGGAGGAGGACGGT
GAGTGCGGAGGCATCACAATGAGAATTATGGCCGACAACTTTTTCTGGTT
GCAGACAAGGAGGATAATAATTCATCCTGAATGCTTGCATCCCGTTTTCA
AACAACTCTTCCATATCATTGGGATCCATTCTTAGAGCTTTAGCCATTTG
GTCAAGGATTTTCAGGGTAAGATTTTTAATTTCTGTTGAGTAAACTTCCC
AGTCATCTCTGAATGGAAGAGGCAACT
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