CX671989
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CX671989 vs. ExPASy Swiss-Prot
Match: PDS5_YEAST (Sister chromatid cohesion protein PDS5 OS=Saccharomyces cerevisiae GN=PDS5 PE=1 SV=1) HSP 1 Score: 90.5077 bits (223), Expect = 1.147e-17 Identity = 52/166 (31.33%), Postives = 94/166 (56.63%), Query Frame = 3 Query: 300 SVDELLPLLDQVESYLSRVEQSPTKSMQNALTPSQKALVADQLFGHSDVDVKVAVAACISEITRITAPEAPYEDDQMKEVFQLIVSSFENLSDKSSRSYAKRTSILETVAKVRSCVVMLDL-ECDALIIEMFQHFLEAIRDDHPDNVFSSMETIISLVLEESEDIP 794 S +ELL L + L+ ++Q T L + ALV+ +L H DV ++ A C+S+I R+ AP+APY D Q+ ++F+L++S FE L D+ + + ++T ++ + + RS V++ DL + L+IE+F F + P +F+ + I+ V+ E + +P Sbjct: 24 STNELLDRLKALHEELASLDQDNTDL--TGLDKYRDALVSRKLLKHKDVGIRAFTACCLSDILRLYAPDAPYTDAQLTDIFKLVLSQFEQLGDQENGYHIQQTYLITKLLEYRSIVLLADLPSSNNLLIELFHIFYDP-NKSFPARLFNVIGGILGEVISEFDSVP 186
BLAST of CX671989 vs. ExPASy Swiss-Prot
Match: PDS5_SCHPO (Sister chromatid cohesion protein pds5 OS=Schizosaccharomyces pombe GN=pds5 PE=1 SV=1) HSP 1 Score: 77.411 bits (189), Expect = 1.005e-13 Identity = 46/168 (27.38%), Postives = 89/168 (52.98%), Query Frame = 3 Query: 294 PDSVDELLPLLDQVESYLSRVEQSPTKSMQNALTPSQKALVADQLFGHSDVDVKVAVAACISEITRITAPEAPYEDDQMKEVFQLIVSSFENLSDKSSRSYAKRTSILETVAKVRSCVVMLDL-ECDALIIEMFQHFLEAIRDDHPDNVFSSMETIISLVLEESEDIP 794 P + E+L L + L+ + Q ++++ P ++LV + L H D ++ CI E+ R+ AP+AP+ Q++++FQ+I+ L ++ S Y + ILE+++ V+S V+++DL + ++ +F+ F + R NV M II+ ++ E IP Sbjct: 17 PLTTSEILKRLRDLLGELTSLSQDTID--RDSVLPVARSLVNNNLLHHKDKGIRSYTLCCIVELLRLCAPDAPFTLSQLEDIFQVILKILSGLMNQESTYYPQIYEILESLSNVKSAVLIVDLPNAEEFLVNIFRLFFDLARKGTTKNVEFYMLDIINQLINEINTIP 182
BLAST of CX671989 vs. ExPASy Swiss-Prot
Match: PDS5A_MOUSE (Sister chromatid cohesion protein PDS5 homolog A OS=Mus musculus GN=Pds5a PE=2 SV=2) HSP 1 Score: 76.2554 bits (186), Expect = 2.239e-13 Identity = 50/187 (26.74%), Postives = 91/187 (48.66%), Query Frame = 3 Query: 261 LMDAGNKLLEPPD--------SVDELLPLLDQVESYLSRVEQSPTKSMQNALTPSQKALVADQLFGHSDVDVKVAVAACISEITRITAPEAPY-EDDQMKEVFQLIVSSFENLSDKSSRSYAKRTSILETVAKVRSCVVMLDLE-CDALIIEMFQHFLEAIRDDHPDNVFSSMETIISLVLEESEDI 791 ++ A K+ PP + DE++ L V ++Q Q L P L ++ + + DV++ VA C+++I RI APEAPY D++K++F I + L D S + + +LE +A V+S + +LE C+ + I++F+ I + H V M ++S ++ E + + Sbjct: 15 VVSADGKIAYPPGVKEITDKITTDEMIKRLQMVVKTFMDMDQDSEDEKQQYL-PLALHLASEFFLRNPNKDVRLLVACCLADIFRIYAPEAPYTSHDKLKDIFLFITRQLKGLEDTKSPQFNRYFYLLENLAWVKSYNICFELEDCNEIFIQLFRTLFSVINNSHNTKVQMHMLDLMSSIIMEGDGV 200
BLAST of CX671989 vs. ExPASy Swiss-Prot
Match: PD5AB_XENLA (Sister chromatid cohesion protein PDS5 homolog A-B OS=Xenopus laevis GN=pds5a-B PE=1 SV=1) HSP 1 Score: 76.2554 bits (186), Expect = 2.239e-13 Identity = 51/175 (29.14%), Postives = 87/175 (49.71%), Query Frame = 3 Query: 273 GNKLLEPPDSVDELLPLLDQVESYLSRVEQSPTKSMQNALTPSQKALVADQLFGHSDVDVKVAVAACISEITRITAPEAPY-EDDQMKEVFQLIVSSFENLSDKSSRSYAKRTSILETVAKVRSCVVMLDLE-CDALIIEMFQHFLEAIRDDHPDNVFSSMETIISLVLEESEDI 791 G K + S DE++ L V ++Q + Q L P L +D + + DV++ VA C+++I RI APEAPY D++KE+F I + L D S + + +LE +A V+S + +LE C+ + I++F+ I + H V M ++S + E + + Sbjct: 20 GVKEITDKISNDEVVKRLKMVVKTFMDMDQDSEEEKQQYL-PLALHLSSDFFLRNPNKDVRLLVACCLADIFRIYAPEAPYTSHDKLKEIFLFITRQLKGLEDTKSPQFNRYFYLLENLAWVKSYNICFELEDCNEIFIQLFKTLFSVINNSHNQKVQMHMLDLMSSITMEGDGV 193
BLAST of CX671989 vs. ExPASy Swiss-Prot
Match: PDS5A_RAT (Sister chromatid cohesion protein PDS5 homolog A OS=Rattus norvegicus GN=Pds5a PE=2 SV=1) HSP 1 Score: 75.8702 bits (185), Expect = 2.924e-13 Identity = 50/187 (26.74%), Postives = 91/187 (48.66%), Query Frame = 3 Query: 261 LMDAGNKLLEPPD--------SVDELLPLLDQVESYLSRVEQSPTKSMQNALTPSQKALVADQLFGHSDVDVKVAVAACISEITRITAPEAPY-EDDQMKEVFQLIVSSFENLSDKSSRSYAKRTSILETVAKVRSCVVMLDLE-CDALIIEMFQHFLEAIRDDHPDNVFSSMETIISLVLEESEDI 791 ++ A K+ PP + DE++ L V ++Q Q L P L ++ + + DV++ VA C+++I RI APEAPY D++K++F I + L D S + + +LE +A V+S + +LE C+ + I++F+ I + H V M ++S ++ E + + Sbjct: 15 VVSADGKIAYPPGVKEITDKITTDEMIKRLKMVVKTFMDMDQDSEDEKQQYL-PLALHLASEFFLRNPNKDVRLLVACCLADIFRIYAPEAPYTSHDKLKDIFLFITRQLKGLEDTKSPQFNRYFYLLENLAWVKSYNICFELEDCNEIFIQLFRTLFSVINNSHNKKVQMHMLDLMSSIIMEGDGV 200
BLAST of CX671989 vs. ExPASy Swiss-Prot
Match: PDS5A_HUMAN (Sister chromatid cohesion protein PDS5 homolog A OS=Homo sapiens GN=PDS5A PE=1 SV=1) HSP 1 Score: 75.8702 bits (185), Expect = 2.924e-13 Identity = 50/187 (26.74%), Postives = 91/187 (48.66%), Query Frame = 3 Query: 261 LMDAGNKLLEPPD--------SVDELLPLLDQVESYLSRVEQSPTKSMQNALTPSQKALVADQLFGHSDVDVKVAVAACISEITRITAPEAPY-EDDQMKEVFQLIVSSFENLSDKSSRSYAKRTSILETVAKVRSCVVMLDLE-CDALIIEMFQHFLEAIRDDHPDNVFSSMETIISLVLEESEDI 791 ++ A K+ PP + DE++ L V ++Q Q L P L ++ + + DV++ VA C+++I RI APEAPY D++K++F I + L D S + + +LE +A V+S + +LE C+ + I++F+ I + H V M ++S ++ E + + Sbjct: 16 VVSADGKIAYPPGVKEITDKITTDEMIKRLKMVVKTFMDMDQDSEDEKQQYL-PLALHLASEFFLRNPNKDVRLLVACCLADIFRIYAPEAPYTSHDKLKDIFLFITRQLKGLEDTKSPQFNRYFYLLENLAWVKSYNICFELEDCNEIFIQLFRTLFSVINNSHNKKVQMHMLDLMSSIIMEGDGV 201
BLAST of CX671989 vs. ExPASy Swiss-Prot
Match: PD5BB_XENLA (Sister chromatid cohesion protein PDS5 homolog B-B OS=Xenopus laevis GN=pds5b-B PE=1 SV=2) HSP 1 Score: 75.8702 bits (185), Expect = 2.924e-13 Identity = 47/175 (26.86%), Postives = 87/175 (49.71%), Query Frame = 3 Query: 273 GNKLLEPPDSVDELLPLLDQVESYLSRVEQSPTKSMQNALTPSQKALVADQLFGHSDVDVKVAVAACISEITRITAPEAPY-EDDQMKEVFQLIVSSFENLSDKSSRSYAKRTSILETVAKVRSCVVMLDLE-CDALIIEMFQHFLEAIRDDHPDNVFSSMETIISLVLEESEDI 791 G K + S +E++ L V ++Q + + L + L +D H D DV++ VA C+++I RI APEAPY D++K++F I + L D S + + +LE +A V+S + +LE C+ + ++++ I + H V M ++S ++ E + + Sbjct: 18 GVKEISDKISKEEMVRRLKMVVKTFMDMDQDSEEEKEQYLNLALH-LASDFFLKHPDKDVRLLVACCLADIFRIYAPEAPYTSPDKLKDIFMFITRQLKGLEDTKSPQFNRYFYLLENIAWVKSYNICFELEDCNEIFTQLYRTLFSVINNGHNQKVHMHMVDLMSSIVCEGDTV 191
BLAST of CX671989 vs. ExPASy Swiss-Prot
Match: PD5AA_XENLA (Sister chromatid cohesion protein PDS5 homolog A-A OS=Xenopus laevis GN=pds5a-A PE=1 SV=1) HSP 1 Score: 75.0998 bits (183), Expect = 4.988e-13 Identity = 53/190 (27.89%), Postives = 94/190 (49.47%), Query Frame = 3 Query: 252 EQQLMDAGNKLLEPPD--------SVDELLPLLDQVESYLSRVEQSPTKSMQNALTPSQKALVADQLFGHSDVDVKVAVAACISEITRITAPEAPY-EDDQMKEVFQLIVSSFENLSDKSSRSYAKRTSILETVAKVRSCVVMLDLE-CDALIIEMFQHFLEAIRDDHPDNVFSSMETIISLVLEESEDI 791 + +L+D G ++ PP S DE++ L V ++Q + Q L P L ++ + + DV++ VA C+++I RI APEAPY D++KE+F I + L D S + + +LE +A V+S + +LE C+ + I++F+ I + H V M ++S + E + + Sbjct: 6 QPKLVD-GKSIIYPPGVKEITDKISNDEVVKRLKMVVKTYMDMDQDSEEEKQQYL-PLALHLSSEFFLRNPNKDVRLLVACCLADIFRIYAPEAPYTSHDKLKEIFLFITRQLKGLEDTKSPQFNRYFYLLENLAWVKSYNICFELEDCNEIFIQLFKTLFSVINNSHNQKVQMHMLDLMSSITMEGDGV 193
BLAST of CX671989 vs. ExPASy Swiss-Prot
Match: PDS5A_CHICK (Sister chromatid cohesion protein PDS5 homolog A OS=Gallus gallus GN=PDS5A PE=2 SV=2) HSP 1 Score: 73.9442 bits (180), Expect = 1.111e-12 Identity = 46/164 (28.05%), Postives = 83/164 (50.61%), Query Frame = 3 Query: 306 DELLPLLDQVESYLSRVEQSPTKSMQNALTPSQKALVADQLFGHSDVDVKVAVAACISEITRITAPEAPY-EDDQMKEVFQLIVSSFENLSDKSSRSYAKRTSILETVAKVRSCVVMLDLE-CDALIIEMFQHFLEAIRDDHPDNVFSSMETIISLVLEESEDI 791 DE++ L V ++Q Q L P L ++ + + DV++ VA C+++I RI APEAPY D++K++F I + L D S + + +LE +A V+S + +LE C+ + I++F+ I + H V M ++S ++ E + + Sbjct: 33 DEVVKRLKMVVKTFMDMDQDSEDEKQQYL-PLALHLASEFFLRNPNKDVRLLVACCLADIFRIYAPEAPYTSHDKLKDIFLFITRQLKGLEDTKSPQFNRYFYLLENLAWVKSYNICFELEDCNEIFIQLFRTLFSVINNSHNQKVQMHMLDLMSSIIMEGDGV 195
BLAST of CX671989 vs. ExPASy Swiss-Prot
Match: PDS5A_DANRE (Sister chromatid cohesion protein PDS5 homolog A OS=Danio rerio GN=pds5a PE=2 SV=1) HSP 1 Score: 73.559 bits (179), Expect = 1.451e-12 Identity = 49/175 (28.00%), Postives = 88/175 (50.29%), Query Frame = 3 Query: 273 GNKLLEPPDSVDELLPLLDQVESYLSRVEQSPTKSMQNALTPSQKALVADQLFGHSDVDVKVAVAACISEITRITAPEAPY-EDDQMKEVFQLIVSSFENLSDKSSRSYAKRTSILETVAKVRSCVVMLDLE-CDALIIEMFQHFLEAIRDDHPDNVFSSMETIISLVLEESEDI 791 G K + S DE++ L V ++Q + Q L + L ++ + + DV++ VA C+++I RI APEAPY D++KE+F I + L D S + + +LE +A V+S + +LE C+ + I++F+ I + H V M ++S ++ E + + Sbjct: 23 GVKEITDKISNDEVVKRLKLVVKTYMDMDQDSEEEKQQYLALALH-LASEFFLRNPNKDVRLLVACCLADIFRIYAPEAPYTSHDKLKEIFLFITRQLKGLEDTKSPQFNRYFYLLENLAWVKSYNICFELEDCNEIFIQLFKTLFSVINNSHNQKVQMHMLDLMSSIIMEGDGV 196 The following BLAST results are available for this feature:
BLAST of CX671989 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 15
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Sequences
The
following sequences are available for this feature:
EST sequence >CX671989 ID=CX671989; Name=CX671989; organism=Citrus sinensis; type=EST; length=795bpback to top |