CX671989

Overview
NameCX671989
Unique NameCX671989
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length795
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX671989_ssr20 microsatellite CX671989_ssr20:20..37. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig12912 contig Csv1_Contig12912:21..815. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX671989 vs. ExPASy Swiss-Prot
Match: PDS5_YEAST (Sister chromatid cohesion protein PDS5 OS=Saccharomyces cerevisiae GN=PDS5 PE=1 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 1.147e-17
Identity = 52/166 (31.33%), Postives = 94/166 (56.63%), Query Frame = 3
Query:  300 SVDELLPLLDQVESYLSRVEQSPTKSMQNALTPSQKALVADQLFGHSDVDVKVAVAACISEITRITAPEAPYEDDQMKEVFQLIVSSFENLSDKSSRSYAKRTSILETVAKVRSCVVMLDL-ECDALIIEMFQHFLEAIRDDHPDNVFSSMETIISLVLEESEDIP 794
            S +ELL  L  +   L+ ++Q  T      L   + ALV+ +L  H DV ++   A C+S+I R+ AP+APY D Q+ ++F+L++S FE L D+ +  + ++T ++  + + RS V++ DL   + L+IE+F  F +      P  +F+ +  I+  V+ E + +P
Sbjct:   24 STNELLDRLKALHEELASLDQDNTDL--TGLDKYRDALVSRKLLKHKDVGIRAFTACCLSDILRLYAPDAPYTDAQLTDIFKLVLSQFEQLGDQENGYHIQQTYLITKLLEYRSIVLLADLPSSNNLLIELFHIFYDP-NKSFPARLFNVIGGILGEVISEFDSVP 186          
BLAST of CX671989 vs. ExPASy Swiss-Prot
Match: PDS5_SCHPO (Sister chromatid cohesion protein pds5 OS=Schizosaccharomyces pombe GN=pds5 PE=1 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 1.005e-13
Identity = 46/168 (27.38%), Postives = 89/168 (52.98%), Query Frame = 3
Query:  294 PDSVDELLPLLDQVESYLSRVEQSPTKSMQNALTPSQKALVADQLFGHSDVDVKVAVAACISEITRITAPEAPYEDDQMKEVFQLIVSSFENLSDKSSRSYAKRTSILETVAKVRSCVVMLDL-ECDALIIEMFQHFLEAIRDDHPDNVFSSMETIISLVLEESEDIP 794
            P +  E+L  L  +   L+ + Q      ++++ P  ++LV + L  H D  ++     CI E+ R+ AP+AP+   Q++++FQ+I+     L ++ S  Y +   ILE+++ V+S V+++DL   +  ++ +F+ F +  R     NV   M  II+ ++ E   IP
Sbjct:   17 PLTTSEILKRLRDLLGELTSLSQDTID--RDSVLPVARSLVNNNLLHHKDKGIRSYTLCCIVELLRLCAPDAPFTLSQLEDIFQVILKILSGLMNQESTYYPQIYEILESLSNVKSAVLIVDLPNAEEFLVNIFRLFFDLARKGTTKNVEFYMLDIINQLINEINTIP 182          
BLAST of CX671989 vs. ExPASy Swiss-Prot
Match: PDS5A_MOUSE (Sister chromatid cohesion protein PDS5 homolog A OS=Mus musculus GN=Pds5a PE=2 SV=2)

HSP 1 Score: 76.2554 bits (186), Expect = 2.239e-13
Identity = 50/187 (26.74%), Postives = 91/187 (48.66%), Query Frame = 3
Query:  261 LMDAGNKLLEPPD--------SVDELLPLLDQVESYLSRVEQSPTKSMQNALTPSQKALVADQLFGHSDVDVKVAVAACISEITRITAPEAPY-EDDQMKEVFQLIVSSFENLSDKSSRSYAKRTSILETVAKVRSCVVMLDLE-CDALIIEMFQHFLEAIRDDHPDNVFSSMETIISLVLEESEDI 791
            ++ A  K+  PP         + DE++  L  V      ++Q      Q  L P    L ++    + + DV++ VA C+++I RI APEAPY   D++K++F  I    + L D  S  + +   +LE +A V+S  +  +LE C+ + I++F+     I + H   V   M  ++S ++ E + +
Sbjct:   15 VVSADGKIAYPPGVKEITDKITTDEMIKRLQMVVKTFMDMDQDSEDEKQQYL-PLALHLASEFFLRNPNKDVRLLVACCLADIFRIYAPEAPYTSHDKLKDIFLFITRQLKGLEDTKSPQFNRYFYLLENLAWVKSYNICFELEDCNEIFIQLFRTLFSVINNSHNTKVQMHMLDLMSSIIMEGDGV 200          
BLAST of CX671989 vs. ExPASy Swiss-Prot
Match: PD5AB_XENLA (Sister chromatid cohesion protein PDS5 homolog A-B OS=Xenopus laevis GN=pds5a-B PE=1 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.239e-13
Identity = 51/175 (29.14%), Postives = 87/175 (49.71%), Query Frame = 3
Query:  273 GNKLLEPPDSVDELLPLLDQVESYLSRVEQSPTKSMQNALTPSQKALVADQLFGHSDVDVKVAVAACISEITRITAPEAPY-EDDQMKEVFQLIVSSFENLSDKSSRSYAKRTSILETVAKVRSCVVMLDLE-CDALIIEMFQHFLEAIRDDHPDNVFSSMETIISLVLEESEDI 791
            G K +    S DE++  L  V      ++Q   +  Q  L P    L +D    + + DV++ VA C+++I RI APEAPY   D++KE+F  I    + L D  S  + +   +LE +A V+S  +  +LE C+ + I++F+     I + H   V   M  ++S +  E + +
Sbjct:   20 GVKEITDKISNDEVVKRLKMVVKTFMDMDQDSEEEKQQYL-PLALHLSSDFFLRNPNKDVRLLVACCLADIFRIYAPEAPYTSHDKLKEIFLFITRQLKGLEDTKSPQFNRYFYLLENLAWVKSYNICFELEDCNEIFIQLFKTLFSVINNSHNQKVQMHMLDLMSSITMEGDGV 193          
BLAST of CX671989 vs. ExPASy Swiss-Prot
Match: PDS5A_RAT (Sister chromatid cohesion protein PDS5 homolog A OS=Rattus norvegicus GN=Pds5a PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.924e-13
Identity = 50/187 (26.74%), Postives = 91/187 (48.66%), Query Frame = 3
Query:  261 LMDAGNKLLEPPD--------SVDELLPLLDQVESYLSRVEQSPTKSMQNALTPSQKALVADQLFGHSDVDVKVAVAACISEITRITAPEAPY-EDDQMKEVFQLIVSSFENLSDKSSRSYAKRTSILETVAKVRSCVVMLDLE-CDALIIEMFQHFLEAIRDDHPDNVFSSMETIISLVLEESEDI 791
            ++ A  K+  PP         + DE++  L  V      ++Q      Q  L P    L ++    + + DV++ VA C+++I RI APEAPY   D++K++F  I    + L D  S  + +   +LE +A V+S  +  +LE C+ + I++F+     I + H   V   M  ++S ++ E + +
Sbjct:   15 VVSADGKIAYPPGVKEITDKITTDEMIKRLKMVVKTFMDMDQDSEDEKQQYL-PLALHLASEFFLRNPNKDVRLLVACCLADIFRIYAPEAPYTSHDKLKDIFLFITRQLKGLEDTKSPQFNRYFYLLENLAWVKSYNICFELEDCNEIFIQLFRTLFSVINNSHNKKVQMHMLDLMSSIIMEGDGV 200          
BLAST of CX671989 vs. ExPASy Swiss-Prot
Match: PDS5A_HUMAN (Sister chromatid cohesion protein PDS5 homolog A OS=Homo sapiens GN=PDS5A PE=1 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.924e-13
Identity = 50/187 (26.74%), Postives = 91/187 (48.66%), Query Frame = 3
Query:  261 LMDAGNKLLEPPD--------SVDELLPLLDQVESYLSRVEQSPTKSMQNALTPSQKALVADQLFGHSDVDVKVAVAACISEITRITAPEAPY-EDDQMKEVFQLIVSSFENLSDKSSRSYAKRTSILETVAKVRSCVVMLDLE-CDALIIEMFQHFLEAIRDDHPDNVFSSMETIISLVLEESEDI 791
            ++ A  K+  PP         + DE++  L  V      ++Q      Q  L P    L ++    + + DV++ VA C+++I RI APEAPY   D++K++F  I    + L D  S  + +   +LE +A V+S  +  +LE C+ + I++F+     I + H   V   M  ++S ++ E + +
Sbjct:   16 VVSADGKIAYPPGVKEITDKITTDEMIKRLKMVVKTFMDMDQDSEDEKQQYL-PLALHLASEFFLRNPNKDVRLLVACCLADIFRIYAPEAPYTSHDKLKDIFLFITRQLKGLEDTKSPQFNRYFYLLENLAWVKSYNICFELEDCNEIFIQLFRTLFSVINNSHNKKVQMHMLDLMSSIIMEGDGV 201          
BLAST of CX671989 vs. ExPASy Swiss-Prot
Match: PD5BB_XENLA (Sister chromatid cohesion protein PDS5 homolog B-B OS=Xenopus laevis GN=pds5b-B PE=1 SV=2)

HSP 1 Score: 75.8702 bits (185), Expect = 2.924e-13
Identity = 47/175 (26.86%), Postives = 87/175 (49.71%), Query Frame = 3
Query:  273 GNKLLEPPDSVDELLPLLDQVESYLSRVEQSPTKSMQNALTPSQKALVADQLFGHSDVDVKVAVAACISEITRITAPEAPY-EDDQMKEVFQLIVSSFENLSDKSSRSYAKRTSILETVAKVRSCVVMLDLE-CDALIIEMFQHFLEAIRDDHPDNVFSSMETIISLVLEESEDI 791
            G K +    S +E++  L  V      ++Q   +  +  L  +   L +D    H D DV++ VA C+++I RI APEAPY   D++K++F  I    + L D  S  + +   +LE +A V+S  +  +LE C+ +  ++++     I + H   V   M  ++S ++ E + +
Sbjct:   18 GVKEISDKISKEEMVRRLKMVVKTFMDMDQDSEEEKEQYLNLALH-LASDFFLKHPDKDVRLLVACCLADIFRIYAPEAPYTSPDKLKDIFMFITRQLKGLEDTKSPQFNRYFYLLENIAWVKSYNICFELEDCNEIFTQLYRTLFSVINNGHNQKVHMHMVDLMSSIVCEGDTV 191          
BLAST of CX671989 vs. ExPASy Swiss-Prot
Match: PD5AA_XENLA (Sister chromatid cohesion protein PDS5 homolog A-A OS=Xenopus laevis GN=pds5a-A PE=1 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.988e-13
Identity = 53/190 (27.89%), Postives = 94/190 (49.47%), Query Frame = 3
Query:  252 EQQLMDAGNKLLEPPD--------SVDELLPLLDQVESYLSRVEQSPTKSMQNALTPSQKALVADQLFGHSDVDVKVAVAACISEITRITAPEAPY-EDDQMKEVFQLIVSSFENLSDKSSRSYAKRTSILETVAKVRSCVVMLDLE-CDALIIEMFQHFLEAIRDDHPDNVFSSMETIISLVLEESEDI 791
            + +L+D G  ++ PP         S DE++  L  V      ++Q   +  Q  L P    L ++    + + DV++ VA C+++I RI APEAPY   D++KE+F  I    + L D  S  + +   +LE +A V+S  +  +LE C+ + I++F+     I + H   V   M  ++S +  E + +
Sbjct:    6 QPKLVD-GKSIIYPPGVKEITDKISNDEVVKRLKMVVKTYMDMDQDSEEEKQQYL-PLALHLSSEFFLRNPNKDVRLLVACCLADIFRIYAPEAPYTSHDKLKEIFLFITRQLKGLEDTKSPQFNRYFYLLENLAWVKSYNICFELEDCNEIFIQLFKTLFSVINNSHNQKVQMHMLDLMSSITMEGDGV 193          
BLAST of CX671989 vs. ExPASy Swiss-Prot
Match: PDS5A_CHICK (Sister chromatid cohesion protein PDS5 homolog A OS=Gallus gallus GN=PDS5A PE=2 SV=2)

HSP 1 Score: 73.9442 bits (180), Expect = 1.111e-12
Identity = 46/164 (28.05%), Postives = 83/164 (50.61%), Query Frame = 3
Query:  306 DELLPLLDQVESYLSRVEQSPTKSMQNALTPSQKALVADQLFGHSDVDVKVAVAACISEITRITAPEAPY-EDDQMKEVFQLIVSSFENLSDKSSRSYAKRTSILETVAKVRSCVVMLDLE-CDALIIEMFQHFLEAIRDDHPDNVFSSMETIISLVLEESEDI 791
            DE++  L  V      ++Q      Q  L P    L ++    + + DV++ VA C+++I RI APEAPY   D++K++F  I    + L D  S  + +   +LE +A V+S  +  +LE C+ + I++F+     I + H   V   M  ++S ++ E + +
Sbjct:   33 DEVVKRLKMVVKTFMDMDQDSEDEKQQYL-PLALHLASEFFLRNPNKDVRLLVACCLADIFRIYAPEAPYTSHDKLKDIFLFITRQLKGLEDTKSPQFNRYFYLLENLAWVKSYNICFELEDCNEIFIQLFRTLFSVINNSHNQKVQMHMLDLMSSIIMEGDGV 195          
BLAST of CX671989 vs. ExPASy Swiss-Prot
Match: PDS5A_DANRE (Sister chromatid cohesion protein PDS5 homolog A OS=Danio rerio GN=pds5a PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.451e-12
Identity = 49/175 (28.00%), Postives = 88/175 (50.29%), Query Frame = 3
Query:  273 GNKLLEPPDSVDELLPLLDQVESYLSRVEQSPTKSMQNALTPSQKALVADQLFGHSDVDVKVAVAACISEITRITAPEAPY-EDDQMKEVFQLIVSSFENLSDKSSRSYAKRTSILETVAKVRSCVVMLDLE-CDALIIEMFQHFLEAIRDDHPDNVFSSMETIISLVLEESEDI 791
            G K +    S DE++  L  V      ++Q   +  Q  L  +   L ++    + + DV++ VA C+++I RI APEAPY   D++KE+F  I    + L D  S  + +   +LE +A V+S  +  +LE C+ + I++F+     I + H   V   M  ++S ++ E + +
Sbjct:   23 GVKEITDKISNDEVVKRLKLVVKTYMDMDQDSEEEKQQYLALALH-LASEFFLRNPNKDVRLLVACCLADIFRIYAPEAPYTSHDKLKEIFLFITRQLKGLEDTKSPQFNRYFYLLENLAWVKSYNICFELEDCNEIFIQLFKTLFSVINNSHNQKVQMHMLDLMSSIIMEGDGV 196          
The following BLAST results are available for this feature:
BLAST of CX671989 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 15
Match NameE-valueIdentityDescription
PDS5_YEAST1.147e-1731.33Sister chromatid cohesion protein PDS5 OS=Saccharo... [more]
PDS5_SCHPO1.005e-1327.38Sister chromatid cohesion protein pds5 OS=Schizosa... [more]
PDS5A_MOUSE2.239e-1326.74Sister chromatid cohesion protein PDS5 homolog A O... [more]
PD5AB_XENLA2.239e-1329.14Sister chromatid cohesion protein PDS5 homolog A-B... [more]
PDS5A_RAT2.924e-1326.74Sister chromatid cohesion protein PDS5 homolog A O... [more]
PDS5A_HUMAN2.924e-1326.74Sister chromatid cohesion protein PDS5 homolog A O... [more]
PD5BB_XENLA2.924e-1326.86Sister chromatid cohesion protein PDS5 homolog B-B... [more]
PD5AA_XENLA4.988e-1327.89Sister chromatid cohesion protein PDS5 homolog A-A... [more]
PDS5A_CHICK1.111e-1228.05Sister chromatid cohesion protein PDS5 homolog A O... [more]
PDS5A_DANRE1.451e-1228.00Sister chromatid cohesion protein PDS5 homolog A O... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS10_14C10_g Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-14C10-E20-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX671989 ID=CX671989; Name=CX671989; organism=Citrus sinensis; type=EST; length=795bp
AAAAAATACACACACTCGTTCTCTCTCTCTCTCTCTCGCTCTTTCTAAGC
AAAAACAAAGACGAGAGAAACCCTAACTTTCTCTCTCTAAATTTCTCGTT
CGAATCTCGCTTTTGAATCTTCAATTCTTTGTTTCCGTGTCGTTTTCTAG
GCTTTCAATGGTGTGAAATCGAAGTTCGAGCGTCTGAAATCGAAGGATCT
ATTGGTGTTTTCGTACAGAGAGAAATTATGGCTTCGTCTGATAAGGAGCT
CGAGCAACAGCTCATGGACGCTGGAAATAAGCTTCTAGAACCTCCAGATT
CCGTTGATGAACTCCTTCCTCTTCTTGATCAAGTTGAGAGTTATCTGTCT
AGGGTGGAACAGTCACCTACCAAGTCAATGCAAAATGCACTCACTCCCTC
GCAGAAAGCATTGGTTGCGGACCAACTTTTTGGGCATTCAGATGTTGATG
TGAAAGTTGCAGTGGCTGCATGCATCAGTGAGATAACAAGAATAACTGCA
CCAGAAGCTCCTTATGAGGATGACCAGATGAAGGAAGTCTTTCAATTGAT
TGTATCATCTTTTGAAAATTTGTCTGACAAATCAAGCCGCTCGTATGCTA
AGAGAACCTCAATCCTTGAAACTGTTGCCAAGGTCAGGTCGTGTGTTGTT
ATGTTGGATCTTGAATGTGATGCACTGATTATCGAGATGTTCCAGCATTT
TCTTGAGGCAATAAGGGATGACCACCCTGACAATGTCTTTTCGTCCATGG
AGACCATTATAAGTCTTGTCTTAGAAGAAAGTGAAGATATACCTC
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