CX671975

Overview
NameCX671975
Unique NameCX671975
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length781
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX671975_ssr30 microsatellite CX671975_ssr30:30..47. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig12615 contig Csv1_Contig12615:49..830. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX671975 vs. ExPASy Swiss-Prot
Match: Y1788_METFK (UPF0061 protein Mfla_1788 OS=Methylobacillus flagellatus (strain KT / ATCC 51484 / DSM 6875) GN=Mfla_1788 PE=3 SV=1)

HSP 1 Score: 201.445 bits (511), Expect = 4.460e-51
Identity = 98/163 (60.12%), Postives = 125/163 (76.69%), Query Frame = 3
Query:  288 LNWDHSFVRELPGDPRTDSIPREVLHACYTKVSPSAEVENPQLVAWSESVADSLELDPKEFERPDFPLFFSGATPLAGAVPYAQCYGGHQFGMWAGQLGDGRAITLGEILNLKSERWELQLKGAGKTPYSRFADGLAVLRSSIREFLCSEAMHFLGIPTTRAL 776
            L +D+ F+RELPGDP T +  R+V  AC+++V P++ V +P+L+A+S  + ++LEL  +E   P +    +G   + G  PYA CYGGHQFG WAGQLGDGRAI+LGE++N + +RWELQLKGAG TPYSR ADG AVLRSS+REFLCSEAMH LGIPTTRAL
Sbjct:    2 LTFDNRFLRELPGDPETSNQLRQVYGACWSRVMPTS-VSSPKLLAYSHEMLEALELSEEEIRSPAWVDALAGNGLMPGMEPYAACYGGHQFGHWAGQLGDGRAISLGEVVNRQGQRWELQLKGAGVTPYSRMADGRAVLRSSVREFLCSEAMHHLGIPTTRAL 163          
BLAST of CX671975 vs. ExPASy Swiss-Prot
Match: Y3800_AZOSE (UPF0061 protein AZOSEA38000 OS=Azoarcus sp. (strain EbN1) GN=AZOSEA38000 PE=3 SV=1)

HSP 1 Score: 201.06 bits (510), Expect = 5.824e-51
Identity = 102/171 (59.65%), Postives = 119/171 (69.59%), Query Frame = 3
Query:  279 LEDLNWDHSFVRELPGDPRTDSIPREVLHACYTKVSPSAEVENPQLVAWSESVADSLELDPKEFERPDFPLFFSGATPLAGAVPYAQCYGGHQFGMWAGQLGDGRAITLGEILNLKSE----RWELQLKGAGKTPYSRFADGLAVLRSSIREFLCSEAMHFLGIPTTRALC 779
            +++L  D+ FV ELPGDP      R+V  ACY++V P+  V  P L+AWS  VA  L  D  +   P+F   F+G   + G  PYA CYGGHQFG WAGQLGDGRAITLGE +  + +    RWELQLKGAG TPYSR ADG AVLRSSIREFLCSEAMH LG+PTTRALC
Sbjct:    1 MKNLVLDNRFVHELPGDPNPSPDVRQVHGACYSRVMPTP-VSAPHLIAWSPEVAALLGFDESDVRSPEFAAVFAGNALMPGMEPYAACYGGHQFGNWAGQLGDGRAITLGEAVTTRGDGHTGRWELQLKGAGPTPYSRHADGRAVLRSSIREFLCSEAMHHLGVPTTRALC 170          
BLAST of CX671975 vs. ExPASy Swiss-Prot
Match: Y1574_AZOSB (UPF0061 protein azo1574 OS=Azoarcus sp. (strain BH72) GN=azo1574 PE=3 SV=1)

HSP 1 Score: 197.208 bits (500), Expect = 8.410e-50
Identity = 104/166 (62.65%), Postives = 117/166 (70.48%), Query Frame = 3
Query:  279 LEDLNWDHSFVRELPGDPRTDSIPREVLHACYTKVSPSAEVENPQLVAWSESVADSLELDPKEFERPDFPLFFSGATPLAGAVPYAQCYGGHQFGMWAGQLGDGRAITLGEILNLKSERWELQLKGAGKTPYSRFADGLAVLRSSIREFLCSEAMHFLGIPTTRAL 776
            +  L +D+ FVRELP DP T    R+V  A Y++V+P+  V  P LVA S  VA  L  D  +   P+F   F G   L G  PYA CYGGHQFG WAGQLGDGRAITLGE+LN +  RWELQLKGAG TPYSR ADG AVLRSSIREFLCSEAMH LG+PTTRAL
Sbjct:    1 MRPLVFDNRFVRELPADPETGPHTRQVAGASYSRVNPTP-VAAPHLVAHSAEVAALLGWDESDIASPEFAEVFGGNRLLDGMEPYAACYGGHQFGNWAGQLGDGRAITLGEVLNGQGGRWELQLKGAGPTPYSRRADGRAVLRSSIREFLCSEAMHHLGVPTTRAL 165          
BLAST of CX671975 vs. ExPASy Swiss-Prot
Match: Y3822_GEMAT (UPF0061 protein GAU_3822 OS=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) GN=GAU_3822 PE=3 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 2.706e-48
Identity = 98/166 (59.04%), Postives = 118/166 (71.08%), Query Frame = 3
Query:  279 LEDLNWDHSFVRELPGDPRTDSIPREVLHACYTKVSPSAEVENPQLVAWSESVADSLELDPKEFERPDFPLFFSGATPLAGAVPYAQCYGGHQFGMWAGQLGDGRAITLGEILNLKSERWELQLKGAGKTPYSRFADGLAVLRSSIREFLCSEAMHFLGIPTTRAL 776
            ++ L +D+ FV ELPGDP   +  R+VL A ++ V P+  V  PQL+A +  VA  L   P++   P+F   F G   L G  P+A CYGGHQFG WAGQLGDGRAI+LGE++    +RWELQLKGAG TPYSR ADG AVLRSSIREFLCSEAMH LG+PTTRAL
Sbjct:    1 MQTLRFDNRFVDELPGDPDPRNQRRQVLGAAWSAVQPTP-VTAPQLLAVAPDVAAMLGFSPEQTASPEFAAVFGGNALLEGMRPWAACYGGHQFGQWAGQLGDGRAISLGELVTTAGDRWELQLKGAGPTPYSRTADGRAVLRSSIREFLCSEAMHHLGVPTTRAL 165          
BLAST of CX671975 vs. ExPASy Swiss-Prot
Match: Y1510_NITMU (UPF0061 protein Nmul_A1510 OS=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) GN=Nmul_A1510 PE=3 SV=1)

HSP 1 Score: 191.43 bits (485), Expect = 4.615e-48
Identity = 101/174 (58.05%), Postives = 126/174 (72.41%), Query Frame = 3
Query:  270 LKALEDLNWDHSFVRELPGDPRTDSIPREVLHACYTKVSPSAEVENPQLVAWSESVADSLELDPKEFERPDFPL-----FFSGATPLAGAVPYAQCYGGHQFGMWAGQLGDGRAITLGEILNLKSERWELQLKGAGKTPYSRFADGLAVLRSSIREFLCSEAMHFLGIPTTRAL 776
            L  L D  +D+ FVR+LPGDP T ++PR+V +A YT+VSP+  V +P+L+AW++ V + L +      RP  P+       +G   L    PYA  YGGHQFG WAGQLGDGRAITLGE+++   +R+ELQLKGAGKTPYSR ADG AVLRSS+REFLCSEAMH LG+PTTRAL
Sbjct:   15 LPDLFDARFDNRFVRQLPGDPETRNVPRQVRNAGYTQVSPTP-VRSPRLLAWADEVGEMLGI-----ARPASPVSPAVEVLAGNRILPSMQPYAARYGGHQFGHWAGQLGDGRAITLGELISPNDKRYELQLKGAGKTPYSRTADGRAVLRSSVREFLCSEAMHSLGVPTTRAL 182          
BLAST of CX671975 vs. ExPASy Swiss-Prot
Match: Y683_TOLAT (UPF0061 protein Tola_0683 OS=Tolumonas auensis (strain DSM 9187 / TA4) GN=Tola_0683 PE=3 SV=1)

HSP 1 Score: 182.185 bits (461), Expect = 2.800e-45
Identity = 98/163 (60.12%), Postives = 118/163 (72.39%), Query Frame = 3
Query:  288 LNWDHSFVRELPGDPRTDSIPREVLHACYTKVSPSAEVENPQLVAWSESVADSLELDPKEFERPDFPLFFSGATPLAGAVPYAQCYGGHQFGMWAGQLGDGRAITLGEILNLKSERWELQLKGAGKTPYSRFADGLAVLRSSIREFLCSEAMHFLGIPTTRAL 776
            L++D+ F+RELPGDP T + PR+V  A ++ V+P A V  PQL+A S  VA  L +   E ++P +    SG   L G  P+A CYGGHQFG WAGQLGDGRAI+LGE+++    RWELQLKGAG TPYSR  DG AVLRSSIREFLCSEAM  LG+PTTRAL
Sbjct:    4 LHFDNRFIRELPGDPLTLNQPRQVHAAFWSAVTP-APVPQPQLIASSAEVAALLGISLAELQQPAWVAALSGNGLLDGMSPFATCYGGHQFGNWAGQLGDGRAISLGELIH-NDLRWELQLKGAGVTPYSRRGDGKAVLRSSIREFLCSEAMFHLGVPTTRAL 164          
BLAST of CX671975 vs. ExPASy Swiss-Prot
Match: Y9953_RHOBA (UPF0061 protein RB9953 OS=Rhodopirellula baltica GN=RB9953 PE=3 SV=1)

HSP 1 Score: 179.489 bits (454), Expect = 1.815e-44
Identity = 91/164 (55.49%), Postives = 112/164 (68.29%), Query Frame = 3
Query:  285 DLNWDHSFVRELPGDPRTDSIPREVLHACYTKVSPSAEVENPQLVAWSESVADSLELDPKEFERPDFPLFFSGATPLAGAVPYAQCYGGHQFGMWAGQLGDGRAITLGEILNLKSERWELQLKGAGKTPYSRFADGLAVLRSSIREFLCSEAMHFLGIPTTRAL 776
            DL +D+ F R+LP D    +  R+V  A +++V P+  V  P+ VA S+ VA+ + LDPK     +     +G     G  P+A CYGGHQFG WAGQLGDGRAI LGE++    + W LQLKGAG TPYSR ADGLAVLRSS+REFLCSEAMH LG+PTTRAL
Sbjct:    4 DLTFDNRFTRDLPADTEPRNFTRQVHQAGFSRVKPTP-VSAPKWVAGSKEVAELIGLDPKWLGSAELTEVLAGNALADGMDPFAMCYGGHQFGNWAGQLGDGRAINLGEVVTADEKHWTLQLKGAGLTPYSRTADGLAVLRSSVREFLCSEAMHHLGVPTTRAL 166          
BLAST of CX671975 vs. ExPASy Swiss-Prot
Match: Y2284_XANCP (UPF0061 protein XCC2284 OS=Xanthomonas campestris pv. campestris GN=XCC2284 PE=3 SV=1)

HSP 1 Score: 170.629 bits (431), Expect = 8.430e-42
Identity = 94/163 (57.67%), Postives = 110/163 (67.48%), Query Frame = 3
Query:  288 LNWDHSFVRELPGDPRTDSIPREVLHACYTKVSPSAEVENPQLVAWSESVADSLELDPKEFERPDFPLFFSGATPLAGAVPYAQCYGGHQFGMWAGQLGDGRAITLGEILNLKSERWELQLKGAGKTPYSRFADGLAVLRSSIREFLCSEAMHFLGIPTTRAL 776
            L +D+    ELPGDP      REVL A ++ V P+  V  P L+A+S  VA  L L  ++   P F   F G     G  P+A  YGGHQFG WAGQLGDGRAI+LGE + +   R+ELQLKGAG TPYSR ADG AVLRSSIREFLCSEAMH+LG+PTTRAL
Sbjct:    4 LQFDNRLRAELPGDPEEGPRRREVL-AAWSAVQPTP-VAAPTLLAYSADVAQRLGLRAEDLASPRFAEVFGGNALYPGMQPWAVNYGGHQFGHWAGQLGDGRAISLGEAIGVDGGRYELQLKGAGPTPYSRGADGRAVLRSSIREFLCSEAMHYLGVPTTRAL 164          
BLAST of CX671975 vs. ExPASy Swiss-Prot
Match: Y1831_XANC8 (UPF0061 protein XC_1831 OS=Xanthomonas campestris pv. campestris (strain 8004) GN=XC_1831 PE=3 SV=1)

HSP 1 Score: 170.629 bits (431), Expect = 8.430e-42
Identity = 94/163 (57.67%), Postives = 110/163 (67.48%), Query Frame = 3
Query:  288 LNWDHSFVRELPGDPRTDSIPREVLHACYTKVSPSAEVENPQLVAWSESVADSLELDPKEFERPDFPLFFSGATPLAGAVPYAQCYGGHQFGMWAGQLGDGRAITLGEILNLKSERWELQLKGAGKTPYSRFADGLAVLRSSIREFLCSEAMHFLGIPTTRAL 776
            L +D+    ELPGDP      REVL A ++ V P+  V  P L+A+S  VA  L L  ++   P F   F G     G  P+A  YGGHQFG WAGQLGDGRAI+LGE + +   R+ELQLKGAG TPYSR ADG AVLRSSIREFLCSEAMH+LG+PTTRAL
Sbjct:    4 LQFDNRLRAELPGDPEEGPRRREVL-AAWSAVQPTP-VAAPTLLAYSADVAQRLGLRAEDLASPRFAEVFGGNALYPGMQPWAVNYGGHQFGHWAGQLGDGRAISLGEAIGVDGGRYELQLKGAGPTPYSRGADGRAVLRSSIREFLCSEAMHYLGVPTTRAL 164          
BLAST of CX671975 vs. ExPASy Swiss-Prot
Match: Y1894_XANCB (UPF0061 protein xcc-b100_1894 OS=Xanthomonas campestris pv. campestris (strain B100) GN=xcc-b100_1894 PE=3 SV=1)

HSP 1 Score: 169.859 bits (429), Expect = 1.438e-41
Identity = 93/163 (57.06%), Postives = 110/163 (67.48%), Query Frame = 3
Query:  288 LNWDHSFVRELPGDPRTDSIPREVLHACYTKVSPSAEVENPQLVAWSESVADSLELDPKEFERPDFPLFFSGATPLAGAVPYAQCYGGHQFGMWAGQLGDGRAITLGEILNLKSERWELQLKGAGKTPYSRFADGLAVLRSSIREFLCSEAMHFLGIPTTRAL 776
            L +D+    +LPGDP      REVL A ++ V P+  V  P L+A+S  VA  L L  ++   P F   F G     G  P+A  YGGHQFG WAGQLGDGRAI+LGE + +   R+ELQLKGAG TPYSR ADG AVLRSSIREFLCSEAMH+LG+PTTRAL
Sbjct:    4 LQFDNRLRAQLPGDPEQGPRRREVL-AAWSAVRPTP-VAAPTLLAYSADVAQRLGLRAEDLASPQFAEVFGGNALYPGMQPWAVNYGGHQFGHWAGQLGDGRAISLGEAIGVDGGRYELQLKGAGPTPYSRGADGRAVLRSSIREFLCSEAMHYLGVPTTRAL 164          
The following BLAST results are available for this feature:
BLAST of CX671975 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 259
Match NameE-valueIdentityDescription
Y1788_METFK4.460e-5160.12UPF0061 protein Mfla_1788 OS=Methylobacillus flage... [more]
Y3800_AZOSE5.824e-5159.65UPF0061 protein AZOSEA38000 OS=Azoarcus sp. (strai... [more]
Y1574_AZOSB8.410e-5062.65UPF0061 protein azo1574 OS=Azoarcus sp. (strain BH... [more]
Y3822_GEMAT2.706e-4859.04UPF0061 protein GAU_3822 OS=Gemmatimonas aurantiac... [more]
Y1510_NITMU4.615e-4858.05UPF0061 protein Nmul_A1510 OS=Nitrosospira multifo... [more]
Y683_TOLAT2.800e-4560.12UPF0061 protein Tola_0683 OS=Tolumonas auensis (st... [more]
Y9953_RHOBA1.815e-4455.49UPF0061 protein RB9953 OS=Rhodopirellula baltica G... [more]
Y2284_XANCP8.430e-4257.67UPF0061 protein XCC2284 OS=Xanthomonas campestris ... [more]
Y1831_XANC88.430e-4257.67UPF0061 protein XC_1831 OS=Xanthomonas campestris ... [more]
Y1894_XANCB1.438e-4157.06UPF0061 protein xcc-b100_1894 OS=Xanthomonas campe... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS10_14C03_g Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-14C03-E6-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX671975 ID=CX671975; Name=CX671975; organism=Citrus sinensis; type=EST; length=781bp
CTAAACCACACCTCCTCTTCTCTTCACTCTCTTCTTCTTCTTCTTCTCTC
CGCCCTCGCCTCCCCAAATTCCCGTTCTACCCCGCCTACTTTACAAAGTC
TCCATCCTGTCCTTCCATCGCATGCCACGTCAGCACGACAGGCGGCGGCG
GTGCTGCGCAGATGGAGTCGAGTGCGTCTGTCGATTCGGTGACGCATGAT
TTGAAGAATCAGAGATTGGATACGGAAACGGAAACGGACGGCGGAGATGA
GAGCAAGATGACGAAGAAGCTGAAAGCTCTTGAGGATCTGAATTGGGACC
ACTCGTTTGTTCGAGAGTTGCCTGGTGATCCCAGGACTGATTCTATCCCT
CGTGAGGTATTGCATGCCTGTTATACTAAAGTTTCTCCGTCAGCTGAAGT
AGAAAATCCTCAGCTTGTTGCGTGGTCAGAATCAGTGGCCGATTCTCTTG
AGTTGGATCCTAAAGAATTTGAAAGACCAGATTTTCCCCTCTTTTTTTCT
GGGGCTACTCCTTTGGCGGGAGCGGTGCCATATGCTCAATGCTACGGTGG
ACATCAATTTGGCATGTGGGCTGGTCAGCTGGGTGATGGTCGGGCAATAA
CTCTTGGCGAGATCCTGAATTTGAAGTCGGAAAGGTGGGAATTGCAGCTT
AAAGGAGCTGGGAAGACTCCATATAGCCGCTTTGCTGATGGCCTTGCAGT
ACTGCGTAGTAGCATCAGGGAGTTCCTTTGCAGTGAAGCCATGCACTTTT
TAGGAATCCCAACAACTCGTGCACTTTGTCT
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