CX671970

Overview
NameCX671970
Unique NameCX671970
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length913
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX671970 vs. ExPASy Swiss-Prot
Match: IF6_MOUSE (Eukaryotic translation initiation factor 6 OS=Mus musculus GN=Eif6 PE=1 SV=2)

HSP 1 Score: 368.237 bits (944), Expect = 3.562e-101
Identity = 179/237 (75.53%), Postives = 204/237 (86.08%), Query Frame = -3
Query:  201 FENSCEVGVFSKLTNAYCLVQIGGSESFYSTFEAELADVIPVVKTSIGGTRIIGRLCAGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALTHTDLDRETEEMIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIAAGLTVNDWTAFCGSDTTATELSVIESVFKLREAQPSALVDEMRKSLIDS 911
            FEN+CEVG F+KLTNAYCLV IGGSE+FYS FE EL+D IPVV  SI G RIIGR+C GN++GLL+P+ TTDQELQH+RNSLPD V ++R+EERLSALGN   CND+VAL H DLDRETEE++ADVL VEVFRQT+A  +LVGSYC FSN+GGLVHP TSIED DELS+LLQVPLVAGTVNRGSEVIAAG+ VNDW AFCG DTT+TELSV+ESVFKL EA+PS +   MR SLIDS
Sbjct:    7 FENNCEVGCFAKLTNAYCLVAIGGSENFYSVFEGELSDAIPVVHASIAGCRIIGRMCVGNRHGLLVPNNTTDQELQHIRNSLPDSVQIRRVEERLSALGNVTTCNDYVALVHPDLDRETEEILADVLKVEVFRQTVADQVLVGSYCVFSNQGGLVHPKTSIEDQDELSSLLQVPLVAGTVNRGSEVIAAGMVVNDWCAFCGLDTTSTELSVVESVFKLNEAKPSTIATSMRDSLIDS 243          
BLAST of CX671970 vs. ExPASy Swiss-Prot
Match: IF6_HUMAN (Eukaryotic translation initiation factor 6 OS=Homo sapiens GN=EIF6 PE=1 SV=1)

HSP 1 Score: 367.466 bits (942), Expect = 6.076e-101
Identity = 178/237 (75.11%), Postives = 203/237 (85.65%), Query Frame = -3
Query:  201 FENSCEVGVFSKLTNAYCLVQIGGSESFYSTFEAELADVIPVVKTSIGGTRIIGRLCAGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALTHTDLDRETEEMIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIAAGLTVNDWTAFCGSDTTATELSVIESVFKLREAQPSALVDEMRKSLIDS 911
            FEN+CE+G F+KLTN YCLV IGGSE+FYS FE EL+D IPVV  SI G RIIGR+C GN++GLL+P+ TTDQELQH+RNSLPD V ++R+EERLSALGN   CND+VAL H DLDRETEE++ADVL VEVFRQT+A  +LVGSYC FSN+GGLVHP TSIED DELS+LLQVPLVAGTVNRGSEVIAAG+ VNDW AFCG DTT+TELSV+ESVFKL EAQPS +   MR SLIDS
Sbjct:    7 FENNCEIGCFAKLTNTYCLVAIGGSENFYSVFEGELSDTIPVVHASIAGCRIIGRMCVGNRHGLLVPNNTTDQELQHIRNSLPDTVQIRRVEERLSALGNVTTCNDYVALVHPDLDRETEEILADVLKVEVFRQTVADQVLVGSYCVFSNQGGLVHPKTSIEDQDELSSLLQVPLVAGTVNRGSEVIAAGMVVNDWCAFCGLDTTSTELSVVESVFKLNEAQPSTIATSMRDSLIDS 243          
BLAST of CX671970 vs. ExPASy Swiss-Prot
Match: IF6_BOVIN (Eukaryotic translation initiation factor 6 OS=Bos taurus GN=EIF6 PE=2 SV=2)

HSP 1 Score: 364.77 bits (935), Expect = 3.938e-100
Identity = 177/237 (74.68%), Postives = 202/237 (85.23%), Query Frame = -3
Query:  201 FENSCEVGVFSKLTNAYCLVQIGGSESFYSTFEAELADVIPVVKTSIGGTRIIGRLCAGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALTHTDLDRETEEMIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIAAGLTVNDWTAFCGSDTTATELSVIESVFKLREAQPSALVDEMRKSLIDS 911
            FEN+CE+G F+KLTN+YCLV IGGSE+FYS FE ELA  IPVV  SI G RIIGR+C GN++GLL+P+ TTDQELQH+RN LPD V ++R+EERLSALGN   CND+VAL H DLDRETEE++ADVL VEVFRQT+A  +LVGSYC FSN+GGLVHP TSIED DELS+LLQVPLVAGTVNRGSEVIAAG+ VNDW AFCG DTT+TELSV+ESVFKL EAQPS +   MR SLIDS
Sbjct:    7 FENNCEIGCFAKLTNSYCLVAIGGSENFYSVFEGELAGTIPVVHASIAGCRIIGRMCVGNRHGLLVPNNTTDQELQHIRNCLPDSVQIRRVEERLSALGNVTTCNDYVALVHPDLDRETEEILADVLKVEVFRQTVADQVLVGSYCVFSNQGGLVHPKTSIEDQDELSSLLQVPLVAGTVNRGSEVIAAGMVVNDWCAFCGLDTTSTELSVVESVFKLNEAQPSTIATSMRDSLIDS 243          
BLAST of CX671970 vs. ExPASy Swiss-Prot
Match: IF6_YEAST (Eukaryotic translation initiation factor 6 OS=Saccharomyces cerevisiae GN=TIF6 PE=1 SV=1)

HSP 1 Score: 353.984 bits (907), Expect = 6.952e-97
Identity = 171/238 (71.85%), Postives = 204/238 (85.71%), Query Frame = -3
Query:  198 FENSCEVGVFSKLTNAYCLVQIGGSESFYSTFEAELADVIPVVKTSIGGTRIIGRLCAGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALTHTDLDRETEEMIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIAAGLTVNDWTAFCGSDTTATELSVIESVFKLREAQPSALVDEMRKSLIDSY 911
            FENS E+GVFSKLTN YCLV +GGSE+FYS FEAEL D IP+V T+I GTRIIGR+ AGN+ GLL+P  TTDQELQHLRNSLPD V +QR+EERLSALGN I CND+VAL H D+DRETEE+I+DVLGVEVFRQTI+GNILVGSYCS SN+GGLVHP TS++D +ELS+LLQVPLVAGTVNRGS V+ AG+ VND+ A  G DTTA ELSVIES+F+L++AQP ++   +R +LI++Y
Sbjct:    7 FENSNEIGVFSKLTNTYCLVAVGGSENFYSAFEAELGDAIPIVHTTIAGTRIIGRMTAGNRRGLLVPTQTTDQELQHLRNSLPDSVKIQRVEERLSALGNVICCNDYVALVHPDIDRETEELISDVLGVEVFRQTISGNILVGSYCSLSNQGGLVHPQTSVQDQEELSSLLQVPLVAGTVNRGSSVVGAGMVVNDYLAVTGLDTTAPELSVIESIFRLQDAQPESISGNLRDTLIETY 244          
BLAST of CX671970 vs. ExPASy Swiss-Prot
Match: IF6_SCHPO (Eukaryotic translation initiation factor 6 OS=Schizosaccharomyces pombe GN=tif6 PE=2 SV=1)

HSP 1 Score: 351.673 bits (901), Expect = 3.450e-96
Identity = 170/238 (71.43%), Postives = 205/238 (86.13%), Query Frame = -3
Query:  198 FENSCEVGVFSKLTNAYCLVQIGGSESFYSTFEAELADVIPVVKTSIGGTRIIGRLCAGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALTHTDLDRETEEMIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIAAGLTVNDWTAFCGSDTTATELSVIESVFKLREAQPSALVDEMRKSLIDSY 911
            FENS E+GVFS LTN+Y LV +GGSE+FYS FEAEL DV+PVV T+IGGTRIIGRL  GN+ GLL+P +TTD ELQHLRNSLPD V +QR++ERLSALGN +ACND+VAL H D++RETEE+IADVL VEVFRQT+AGN+L GSYC+ SN+G LVHP TSI++ DELS+LLQVPLVAGT+NRGS+VI AGL VNDW AF G DTTATEL+V ES+FKL++AQPSA++   R +L++SY
Sbjct:    7 FENSNEIGVFSNLTNSYALVALGGSENFYSVFEAELGDVVPVVHTTIGGTRIIGRLTCGNRKGLLVPSSTTDNELQHLRNSLPDPVKIQRVDERLSALGNIVACNDYVALVHPDIERETEEIIADVLDVEVFRQTVAGNVLTGSYCALSNQGALVHPRTSIQEQDELSSLLQVPLVAGTINRGSDVIGAGLVVNDWCAFAGLDTTATELAVCESIFKLQDAQPSAIISN-RDTLVESY 243          
BLAST of CX671970 vs. ExPASy Swiss-Prot
Match: IF6_DROME (Probable eukaryotic translation initiation factor 6 OS=Drosophila melanogaster GN=eIF6 PE=2 SV=3)

HSP 1 Score: 345.51 bits (885), Expect = 2.473e-94
Identity = 169/236 (71.61%), Postives = 202/236 (85.59%), Query Frame = -3
Query:  204 FENSCEVGVFSKLTNAYCLVQIGGSESFYSTFEAELADVIPVVKTSIGGTRIIGRLCAGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALTHTDLDRETEEMIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIAAGLTVNDWTAFCGSDTTATELSVIESVFKLREAQPSALVDEMRKSLID 911
            FEN+ ++GVF+KLTN YCLV IGGSE+FYS FEAEL D IPVV  ++GG RIIGRL  GN+NGLL+P++TTD+ELQHLRNSLPD V + R+EERLSALGN IACND+VAL H DLD+ETEE+IADVL VEVFRQTIA N LVGSY   SN+GG+VHP TSI+D DELS+LLQVPLVAGTVNRGSEV+AAG+ VNDW +F G +TTATE+SVIESVFKL +AQP+ +  ++R +LI+
Sbjct:    7 FENNDDIGVFTKLTNTYCLVAIGGSETFYSAFEAELGDTIPVVHANVGGCRIIGRLTVGNRNGLLVPNSTTDEELQHLRNSLPDAVKIYRVEERLSALGNVIACNDYVALVHPDLDKETEEIIADVLKVEVFRQTIADNSLVGSYAVLSNQGGMVHPKTSIQDQDELSSLLQVPLVAGTVNRGSEVLAAGMVVNDWLSFVGMNTTATEISVIESVFKLNQAQPATVTTKLRAALIE 242          
BLAST of CX671970 vs. ExPASy Swiss-Prot
Match: IF6_DICDI (Probable eukaryotic translation initiation factor 6 OS=Dictyostelium discoideum GN=eif6 PE=3 SV=1)

HSP 1 Score: 341.658 bits (875), Expect = 3.570e-93
Identity = 167/237 (70.46%), Postives = 201/237 (84.81%), Query Frame = -3
Query:  201 FENSCEVGVFSKLTNAYCLVQIGGSESFYSTFEAELADVIPVVKTSIGGTRIIGRLCAGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALTHTDLDRETEEMIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIAAGLTVNDWTAFCGSDTTATELSVIESVFKLREAQPSALVDEMRKSLIDS 911
            +ENSC+VGVF KLTN YCLV   GS+ F  T E  LAD IPVV+TSI GTRI+GRL AGNKNGLLLP+T TDQELQ +RNSLPD VVVQRIEE+ SALGNCIA ND+VAL H D+DRETEE+IADVLGVEVFRQT++GN+LVG+YC+ +N+G LVHP TSI D DELS+LLQVPLVAGTVNRG+E +AAG  VNDWTA  G+DTTATE+SVIES+F L+ ++PS +++ +R S++D+
Sbjct:    7 YENSCDVGVFLKLTNKYCLVGQCGSKQFLHTVENRLADHIPVVETSIAGTRIVGRLSAGNKNGLLLPNTCTDQELQQIRNSLPDDVVVQRIEEKFSALGNCIATNDYVALVHPDIDRETEEIIADVLGVEVFRQTVSGNVLVGTYCALTNQGALVHPMTSIADQDELSSLLQVPLVAGTVNRGNECVAAGCVVNDWTAIVGADTTATEISVIESIFALQGSKPSNIINNIRNSIVDN 243          
BLAST of CX671970 vs. ExPASy Swiss-Prot
Match: IF6_ARATH (Eukaryotic translation initiation factor 6 OS=Arabidopsis thaliana GN=At2g39820 PE=2 SV=1)

HSP 1 Score: 337.806 bits (865), Expect = 5.156e-92
Identity = 165/238 (69.33%), Postives = 202/238 (84.87%), Query Frame = -3
Query:  195 NSCEVGVFSKLTNAYCLVQI-GGSESFYSTFEAELADVIPVVKTSIGGTRIIGRLCAGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALTHTDLDRETEEMIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIAAGLTVNDWTAFCGSDTTATELSVIESVFKLREAQPSALVDEMRKSLIDSYV 905
            N+CE+GVFSKLTNAYCLV     S +F++ +E++L  VIP+V TSIGG+  IG LC GNKNGLLL HT TDQELQHLR+SLPD+VVVQRIEE + ALGN IACND+VAL H  L+++TEE+I+DVLGVEV+RQTIA N LVGSYCS SN GG+VH +T++E++ EL+ L+QVPLVAGTVNRGS+VI+AGLTVNDWTAFCGSDTTA ELSV+ ++FKL ++QP  +  EMRKSLID+YV
Sbjct:   10 NNCEIGVFSKLTNAYCLVSATSASANFFTGYESKLKGVIPIVTTSIGGSGTIGSLCVGNKNGLLLSHTITDQELQHLRDSLPDEVVVQRIEEPICALGNAIACNDYVALVHPKLEKDTEEIISDVLGVEVYRQTIANNELVGSYCSLSNNGGMVHSNTNVEEMVELANLVQVPLVAGTVNRGSQVISAGLTVNDWTAFCGSDTTAVELSVVNNIFKLVQSQPDFVGSEMRKSLIDTYV 247          
BLAST of CX671970 vs. ExPASy Swiss-Prot
Match: IF6_BETVU (Eukaryotic translation initiation factor 6 (Fragment) OS=Beta vulgaris PE=2 SV=1)

HSP 1 Score: 329.717 bits (844), Expect = 1.404e-89
Identity = 164/187 (87.70%), Postives = 174/187 (93.05%), Query Frame = -3
Query:  351 FENSCEVGVFSKLTNAYCLVQIGGSESFYSTFEAELADVIPVVKTSIGGTRIIGRLCAGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALTHTDLDRETEEMIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVI 911
            FEN+CEVGVFSKLTNAYCLV IGGSE+FYSTFE ELAD IPVVKTSI GTRIIG     NKNGLL+PHTTTDQELQHLRN LPD VVVQRIEE+LSALGNCIACND+VALTHTDLD+ETEE+IADVLGVEVF QTIAGNILVGSYC+ +N+GGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVI
Sbjct:    7 FENNCEVGVFSKLTNAYCLVAIGGSENFYSTFETELADYIPVVKTSIAGTRIIGPNVCRNKNGLLVPHTTTDQELQHLRNCLPDSVVVQRIEEKLSALGNCIACNDYVALTHTDLDKETEELIADVLGVEVFGQTIAGNILVGSYCAITNKGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVI 193          
BLAST of CX671970 vs. ExPASy Swiss-Prot
Match: IF6_CAEEL (Eukaryotic translation initiation factor 6 OS=Caenorhabditis elegans GN=eif-6 PE=2 SV=1)

HSP 1 Score: 295.819 bits (756), Expect = 2.247e-79
Identity = 143/238 (60.08%), Postives = 189/238 (79.41%), Query Frame = -3
Query:  201 FENSCEVGVFSKLTNAYCLVQIGGSESFYSTFEAELADVIPVVKTSIGGTRIIGRLCAGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALTHTDLDRETEEMIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIAAGLTVNDWTAFCGSDTTATELSVIESVFKLRE-AQPSALVDEMRKSLIDS 911
            +E S +VGVF  LTN+YCLV +GG+++FYS  EAEL+D+IPVV TSI  TRI+GRL  GN++GLL+P+ TTDQELQHLRNSLPD+V ++R++ERLSALGN IACNDHVA+ H ++  ETE+ + +VL VEVFR ++A N LVGSYC  S+ G LV   T  E   E++ LLQ+P+VAGT NRGSE+I AG+ VNDW AFCG D+T+TELSV+ES+FKL E   P+++ +++R +LI+S
Sbjct:    7 YEGSNDVGVFCTLTNSYCLVGVGGTQNFYSILEAELSDLIPVVHTSIASTRIVGRLTVGNRHGLLVPNATTDQELQHLRNSLPDEVAIRRVDERLSALGNVIACNDHVAIVHAEISAETEQALVEVLKVEVFRVSLAQNSLVGSYCILSSNGCLVAARTPPETQREIAALLQIPVVAGTCNRGSELIGAGMVVNDWVAFCGLDSTSTELSVVESIFKLGEQGAPTSISNQLRDTLIES 244          
The following BLAST results are available for this feature:
BLAST of CX671970 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 63
Match NameE-valueIdentityDescription
IF6_MOUSE3.562e-10175.53Eukaryotic translation initiation factor 6 OS=Mus ... [more]
IF6_HUMAN6.076e-10175.11Eukaryotic translation initiation factor 6 OS=Homo... [more]
IF6_BOVIN3.938e-10074.68Eukaryotic translation initiation factor 6 OS=Bos ... [more]
IF6_YEAST6.952e-9771.85Eukaryotic translation initiation factor 6 OS=Sacc... [more]
IF6_SCHPO3.450e-9671.43Eukaryotic translation initiation factor 6 OS=Schi... [more]
IF6_DROME2.473e-9471.61Probable eukaryotic translation initiation factor ... [more]
IF6_DICDI3.570e-9370.46Probable eukaryotic translation initiation factor ... [more]
IF6_ARATH5.156e-9269.33Eukaryotic translation initiation factor 6 OS=Arab... [more]
IF6_BETVU1.404e-8987.70Eukaryotic translation initiation factor 6 (Fragme... [more]
IF6_CAEEL2.247e-7960.08Eukaryotic translation initiation factor 6 OS=Caen... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS10_14C01_b Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-14C01-E2-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX671970 ID=CX671970; Name=CX671970; organism=Citrus sinensis; type=EST; length=913bp
TTTTTTGGGGTTAAAAACAACTTGAATTAAAAAAAAAAAAAGTTCAGCAT
CTGTCCTTTTTCTGAATATGATACTTCTGATTGAGATACAAGATTCTGGA
AAATAACATACTATCATTAAGGGAAAACATCTTCAGAGTTGACAAAAACT
GCTTCAACTTCATGACAAAAAAGACTGTAAGCCAAAGTAACTTAGACATA
ACTGTCAATTAAAGATTTCCTCATCTCGTCCACAAGGGCACTAGGTTGAG
CTTCCCTCAACTTGAAAACACTCTCAATAACAGAGAGTTCAGTTGCTGTG
GTGTCTGATCCACAGAATGCTGTCCAGTCATTCACAGTTAACCCAGCAGC
TATGACTTCGCTTCCACGGTTCACAGTCCCAGCCACCAAAGGTACTTGCA
AGAGAGTTGAAAGTTCATCCAAGTCTTCAATGGATGTGTGAGGGTGGACC
AAGCCTCCTCTGTTGGAGAAGGAACAGTAACTGCCAACAAGGATATTACC
AGCAATTGTCTGCCTAAAAACTTCTACTCCAAGAACATCTGCAATCATTT
CCTCTGTTTCCCTGTCAAGATCTGTGTGTGTAAGAGCAACATGGTCGTTG
CATGCTATACAATTGCCCAGGGCAGATAGCCTCTCTTCAATACGCTGAAC
GACAACTTGATCAGGTAGGCTGTTCCTCAAGTGTTGAAGTTCTTGGTCTG
TGGTAGTGTGTGGCAAGAGAAGCCCATTTTTGTTTCCAGCACAAAGCCGG
CCGATAATCCTAGTGCCACCAATAGATGTTTTAACAACAGGAATGACATC
TGCTAACTCAGCCTCAAATGTGCTGTAGAAGCTTTCAGAACCTCCAATTT
GCACCAAGCAATAAGCATTAGTGAGCTTGGAAAACACACCAACCTCACAT
GAATTCTCAAACA
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