CX671969

Overview
NameCX671969
Unique NameCX671969
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length820
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX671969 vs. ExPASy Swiss-Prot
Match: ASCC1_MOUSE (Activating signal cointegrator 1 complex subunit 1 OS=Mus musculus GN=Ascc1 PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 1.131e-15
Identity = 55/198 (27.78%), Postives = 88/198 (44.44%), Query Frame = -3
Query:  189 SSDLGIDKSIFIKPKTFHLTVLMLKLWNRDRVNAATNVLKSISSK-VMDALDNRPLFIRLKGLDLMRGSKDKARILYAPVEEIGDGDRLLHACQVIIDAFNEAGLVFRRDYNKKLKQLHATLMK--IRHEKRRKGTRRV------------DYFDARDIFKQFGSKEWGEYLIKEAHLSQRFVYDESGFYHCCASIPF 737
            S D G+D +IF  PK  HLT+ ML L +   +     +L+    + + D    RPL + + G++ M        +LYA V      +RL      +++ F   GL+ +   + KL   HAT+M   +R +   +G   +            + FD R+I K F +  +G   +   H+SQRF  D  G Y  C  + F
Sbjct:  161 SKDRGVDSTIFQNPKKLHLTIGMLVLLSEQEIQQTCEILQRCKEEFINDISGGRPLEVEMAGIEYMNDDPAMVDVLYAKVHMKDGSNRLQELVDRVLERFQSLGLIVKEWTSVKL---HATVMNTLLRKDPNAEGRYNLYTADGKYIFKERESFDGRNILKTFENFYFGSLRLNSIHISQRFTVDSFGNYASCGHVDF 355          
BLAST of CX671969 vs. ExPASy Swiss-Prot
Match: ASCC1_HUMAN (Activating signal cointegrator 1 complex subunit 1 OS=Homo sapiens GN=ASCC1 PE=1 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 4.449e-12
Identity = 50/185 (27.03%), Postives = 89/185 (48.11%), Query Frame = -3
Query:  192 SSDLGIDKSIFIKPKTFHLTVLMLKLWNRDRVNAATNVLKSISSK-VMDALDNRPLFIRLKGLDLMRGSKDKARILYAPVEEIGDGDRLLHACQVIIDAFNEAGLVFRRDYNKKLKQLHATLMK--IRHEKRRKGTRRVDYFDARDIFKQFGSKEWGEYLIKEAHLSQRFVYDESGFYHCCASIP 737
            S D G+D SIF  PK  HLT+ ML L + + +     +L+    + + D    +PL + + G++ M        +LYA V      +RL      +++ F  +GL+  +++N    +LHAT+M    R +   +G   +   + + IFK+  S + G  ++K   L  R  Y+++   HC   +P
Sbjct:  190 SMDHGVDSSIFQNPKKLHLTIGMLVLLSEEEIQQTCEMLQQCKEEFINDISGGKPLEVEMAGIEYMNDDPGMVDVLYAKVHMKDGSNRLQELVDRVLERFQASGLIV-KEWNS--VKLHATVMNTLFRKDPNAEGRYNLYTAEGKYIFKERESFD-GRNILKSFALLPRLEYNDAISAHCNLCLP 370          
The following BLAST results are available for this feature:
BLAST of CX671969 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
ASCC1_MOUSE1.131e-1527.78Activating signal cointegrator 1 complex subunit 1... [more]
ASCC1_HUMAN4.449e-1227.03Activating signal cointegrator 1 complex subunit 1... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS10_14B12_b Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-14B12-C24-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX671969 ID=CX671969; Name=CX671969; organism=Citrus sinensis; type=EST; length=820bp
CTCTAAACAAGTTCGAAGCCCGTTTTATTCAGTAATATCTAAGGTGCAAA
GGACAAGATTTATAAATTCAGAAGCTAAAACTCAAATTTTAAATACATCG
GCTTCATTACCCTAAGAGAGTATCTACTGACTGATTCCCACTGGGAAGCT
TCAACTTAAATGAGTCAGTCTACTTGCATGTTTTCAGGAAAAGGAATTGA
AGCACAGCAATGATAAAAACCACTTTCATCGTACACAAATCTTTGTGAAA
GATGAGCTTCCTTAATGAGATACTCTCCCCATTCCTTGGATCCGAACTGC
TTGAAAATGTCTCGTGCATCAAAGTAATCAACCCTTCTTGTTCCTTTTCT
CCTTTTCTCATGCCTTATTTTCATCAGAGTGGCATGCAACTGCTTCAACT
TTTTGTTATAATCTCTGCGGAACACAAGTCCAGCTTCGTTAAATGCGTCA
ATGATGACTTGACATGCATGGAGAAGTCGATCACCATCGCCAATTTCTTC
CACAGGCGCATAGAGTATACGAGCTTTATCCTTGGAACCTCTCATTAAAT
CCAGTCCCTTAAGTCTTATAAAGAGAGGACGGTTGTCCAAGGCATCCATC
ACCTTTGAGGAAATACTCTTCAAGACATTGGTAGCTGCATTAACTCGGTC
TCTGTTCCACAACTTCAACATCAATACAGTTAAGTGAAATGTTTTTGGTT
TAATAAATATGGATTTGTCAATTCCCAAGTCAGATGAAGTAGAAGGCCTG
GATGCTTTAGCTTCATAGCCAACAATAAGTATGCTTGTTCTATCCACTTT
AACACGTTCACTGTTGTCAC
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