EY664589

Overview
NameEY664589
Unique NameEY664589
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length969
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY664589_ssr489 microsatellite EY664589_ssr489:489..500. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of EY664589 vs. ExPASy Swiss-Prot
Match: EIN3_ARATH (Protein ETHYLENE INSENSITIVE 3 OS=Arabidopsis thaliana GN=EIN3 PE=1 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 1.124e-23
Identity = 81/223 (36.32%), Postives = 109/223 (48.88%), Query Frame = 1
Query:   19 NHHLTCPYKSGASEFGG--SDFHVNEVKPVVFPQTFAQSKPAGPTFNSVQPSFDISGLGVPEDGQKMISELMSIYDNNIQGNRNVNPGNNAVVTEGQNT--LQPRAQHQQEYYHGQGAVMDGNLFE--------GSNMHENNHLMFTREENQFDRFKI-------MXXXXXXXXXXXXXXXXLMFES-PFDLGSFDYKEDFQAAG-VDTM-----PKHDTSVW 609
            NH L CP++     +G   S FHVNEVKPVV    F Q +P     NSV    D++G+ VPEDGQKMISELMS+YD N+Q N+       ++V E Q+   LQP   + QE+    G +++G+ FE         +N   NN   F    N  + FK                         L+F+S PFD+ SFDY++D    G V TM      + D S+W
Sbjct:  419 NHQLACPHRDSRLPYGAAPSRFHVNEVKPVV---GFPQPRPV----NSVAQPIDLTGI-VPEDGQKMISELMSMYDRNVQSNQ------TSMVMENQSVSLLQPTVHNHQEHLQFPGNMVEGSFFEDLNIPNRANNNNSSNNQTFFQGNNNNNNVFKFDTADHNNFEAAHNNNNNSSGNRFQLVFDSTPFDMASFDYRDDMSMPGVVGTMDGMQQKQQDVSIW 627          
BLAST of EY664589 vs. ExPASy Swiss-Prot
Match: EIL1_ARATH (ETHYLENE INSENSITIVE 3-like 1 protein OS=Arabidopsis thaliana GN=EIL1 PE=1 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.922e-15
Identity = 64/207 (30.92%), Postives = 97/207 (46.86%), Query Frame = 1
Query:   19 NHHLTCPYKSGASEFGGSDFHVNEVKPVVFPQTFAQSKPAGPTFNSVQPSFDISGLGVPEDGQKMISELMSIYDNNIQGNRNVNPGNNAVVTEGQN-TLQPRAQHQQEYYHGQGAVMDGNLFEGSNMHENNHLMFTREENQFDRFKIMXXXXXXXXXXXXXXXXLMFES-PFDLGSFDYKEDFQAAGVDTMPK--------HDTSVW 609
            NH + CPY+     +G S FH+  +K VV         P  P    VQP  D+SG+GVPE+GQKMI+ELM++YD N+Q N+         + E Q+  +  +A   Q+     G  M   + +G+N   NN            RF+                  ++F+S PFD+ +FDY++D+Q   ++ M K         D S+W
Sbjct:  428 NHQMVCPYRDNRLAYGASKFHMGGMKLVV---------PQQP----VQP-IDLSGVGVPENGQKMITELMAMYDRNVQSNQ-----TPPTLMENQSMVIDAKAAQNQQLNFNSGNQM--FMQQGTNNGVNN------------RFQ------------------MVFDSTPFDMAAFDYRDDWQTGAMEGMGKQQQQQQQQQDVSIW 583          
The following BLAST results are available for this feature:
BLAST of EY664589 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
EIN3_ARATH1.124e-2336.32Protein ETHYLENE INSENSITIVE 3 OS=Arabidopsis thal... [more]
EIL1_ARATH1.922e-1530.92ETHYLENE INSENSITIVE 3-like 1 protein OS=Arabidops... [more]
back to top
Properties
Property NameValue
Genbank descriptionCS00-C1-101-068-C02-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY664589 ID=EY664589; Name=EY664589; organism=Citrus sinensis; type=EST; length=969bp
CCCGACCCACGCGTCCGCAATCACCATCTGACATGCCCATATAAAAGTGG
TGCTTCAGAGTTTGGTGGGTCTGATTTTCATGTTAATGAAGTGAAACCAG
TTGTTTTCCCTCAAACATTTGCTCAGTCCAAGCCAGCAGGTCCAACGTTT
AATTCTGTGCAACCTTCCTTTGATATATCAGGACTTGGAGTTCCAGAAGA
CGGTCAAAAAATGATTAGTGAGCTCATGTCGATCTATGATAACAATATCC
AAGGAAACAGGAATGTGAATCCCGGTAACAATGCCGTTGTGACAGAAGGT
CAAAATACTCTTCAGCCAAGAGCTCAGCATCAGCAGGAGTATTACCATGG
TCAAGGAGCTGTAATGGATGGGAACTTGTTCGAAGGATCCAACATGCACG
AGAACAATCATCTGATGTTCACACGAGAGGAAAATCAATTTGATCGGTTT
AAGATTATGAATTCTCCATTCGAGAACAACAGCAGCGGCAACAACAACAA
NTTTAGCTTGATGTTTGAGTCTCCATTCGACTTAGGATCCTTTGATTATA
AAGAGGATTTTCAAGCAGCAGGAGTGGATACCATGCCGAAGCATGATACC
TCAGTCTGGGTCTTAAAACAATACCAGCTTCTCATCCTCATCCTCTGGGC
ATATTTTATGGCTTCCGGATTGGCTTATGATGTGGGTAAAACTCTATTTA
TGTAAAAAAGCCGGTTAGTGGATTTTTCCTTTTACCTGGAGAAATTATAA
ACCAAACAGGTTGTGAGATGGGCCTATTAANAAAGGGGGGAAAAATTCCC
AATAGATATGCCCTGAAGCTGGAACCGGTAAATTATNGGTATGAAGGGAA
ATGGCAAATAAAATAATTAGGGGAATTTGGATTGAAAATATTTAAAGTCA
ACTGGAAAGTTGAAAAATAAAAAAAAAAATAAAGGGCGGGCCGTTTAAAG
ATCAACTTTCACTCCCGTC
back to top