CX671885

Overview
NameCX671885
Unique NameCX671885
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length767
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX671885 vs. ExPASy Swiss-Prot
Match: SELT_ARATH (SelT-like protein OS=Arabidopsis thaliana GN=At3g47300 PE=2 SV=2)

HSP 1 Score: 196.823 bits (499), Expect = 1.080e-49
Identity = 95/135 (70.37%), Postives = 111/135 (82.22%), Query Frame = -2
Query:  365 FCASCSYRGTAITMKRMLETQFPGIDVVLANYPPPLPKRLLAKXXXXXXXXXXXXXXXGEQIFPMLGMTPPP-WYYSLRANRFGSIASTWLIGNFLQSFLQSSGAFEVYCNDDLVFSKLKEGRFPGEIELKDLVA 766
            FC SCSY+GTA++MK+MLE+ FPG+DVVLANYP P PKR+LAK               GEQIFPM+G+  PP WY+SLRANRFGS+ASTWL+GNFLQSFLQSSGAFEV CN +LVFSKLKEGRFPGEIEL+DL++
Sbjct:   63 FCISCSYKGTAVSMKKMLESVFPGLDVVLANYPAPAPKRILAKVVPVAQVGVIGLIMGGEQIFPMIGIAQPPAWYHSLRANRFGSMASTWLLGNFLQSFLQSSGAFEVSCNGELVFSKLKEGRFPGEIELRDLIS 197          
BLAST of CX671885 vs. ExPASy Swiss-Prot
Match: HSP6_HETGL (Putative esophageal gland cell secretory protein 6 OS=Heterodera glycines GN=HSP6 PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 7.813e-16
Identity = 45/141 (31.91%), Postives = 70/141 (49.65%), Query Frame = -2
Query:  344 FCASCSYRGTAITMKRMLETQFPGIDVVLANYPPPLPKRLLAKXXXXXXXXXXXXXXXGEQIFPMLGMTPPPWYYSLRANRFGSIASTWLIGNFLQSFLQSSGAFEVYCNDDLVFSKLKEGRFPGEIELKDLVAKQLASSR 766
            FC SC YR       ++L  ++PGID+   NYPP + + + A+               G   FP LG+  P ++  + +NR  +    +L  N ++  LQS+GAFE+Y   + ++SKL+ GR P   EL   +   LA  R
Sbjct:   87 FCVSCGYRQAYEQFAQILREKYPGIDIHGENYPPGILRTVGAQVIGMVKIALIVCVVSGRSPFPTLGLETPTFFQWMLSNRLSAALMLFLFSNAIEGMLQSTGAFEIYIESERIWSKLESGRVPSPPELFQAIDSHLAIRR 227          
BLAST of CX671885 vs. ExPASy Swiss-Prot
Match: SELT_DROME (SelT-like protein OS=Drosophila melanogaster GN=CG3887 PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.056e-12
Identity = 44/137 (32.12%), Postives = 64/137 (46.72%), Query Frame = -2
Query:  356 FCASCSYRGTAITMKRMLETQFPGIDVVLANYPPPLPKRLLAKXXXXXXXXXXXXXXXGEQIFPMLGMTPPPWYYSLRANRFGSIASTWLIGNFLQSFLQSSGAFEVYCNDDLVFSKLKEGRFPGEIELKDLVAKQL 766
            +C SC YR        +L  ++P I V   NY PP     L+K                   F  LG+  P W+  ++AN+  +    + +GN L++ L SSGAFE+  ND  V+SKL+ GRFP    L  ++   L
Sbjct:   48 YCYSCGYRKAFEDYVGLLGEKYPQIQVNGGNYDPPGLNYYLSKMIFALKIIIIVSVVSAVSPFTFLGLNTPSWWSHMQANKIYACMMIFFLGNMLEAQLISSGAFEITLNDVPVWSKLQTGRFPSPEVLFQIIDNHL 184          
The following BLAST results are available for this feature:
BLAST of CX671885 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
SELT_ARATH1.080e-4970.37SelT-like protein OS=Arabidopsis thaliana GN=At3g4... [more]
HSP6_HETGL7.813e-1631.91Putative esophageal gland cell secretory protein 6... [more]
SELT_DROME1.056e-1232.12SelT-like protein OS=Drosophila melanogaster GN=CG... [more]
back to top
Properties
Property NameValue
Genbank descriptionUCRCS10_13G01_g Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-13G01-M1-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX671885 ID=CX671885; Name=CX671885; organism=Citrus sinensis; type=EST; length=767bp
TTTTTTTTCTCAAAAGCTGCAAGTTATGGGATTTCTTAAAAGAAATATCC
CAGGCTTTCAAAGAGATATTGGGTTACATTGGAAAAGGGGAAATCTTGAT
AGCATCAAGTAAAGATAAGGGCTTAAAATCAGAAATTTCAATCCTGCTGG
GAAAGTAATAGTTGTCGACATGTTTTACAGAGCCAATGTTCATTATGATA
GTGGCATCAAAATCTGTTTATATATTTGCCATAACAACCTAGATAATGAA
ATCTTGTACAAGGCTCTCAGTCAATCCTTTGATTCCAACCCTCAATGTCC
AGTGAATGAACTAGGACCATACACTTCCAACACCATCCACAAGTCTTGAT
GAAGCCAATTGTTTGGCAACAAGATCTTTTAGCTCAATCTCGCCTGGAAA
CCTCCCCTCCTTCAGTTTAGAGAAGACCAAGTCATCATTACAGTAAACTT
CAAAAGCCCCAGAGCTTTGGAGGAAGGACTGCAAAAAGTTTCCAATAAGC
CAGGTAGATGCTATGGACCCAAACCTATTGGCACGCAGCGAATAATACCA
TGGAGGTGGTGTCATTCCCAGCATCGGAAAAATCTGTTCGCCTGCCACTA
CGATCCCAATAACCCCTATCTGAACAGCAGGCACCACTTTAGCAAGTAGA
CGCTTTGGCAGGGGTGGGGGATAATTTGCAAGGACCACATCAATTCCAGG
AAACTGAGTCTCCAACATCCTTTTCATTGTTATTGCAGTGCCCCTATAAG
AGCAAGAAGCACAAAAG
back to top