CX671880

Overview
NameCX671880
Unique NameCX671880
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length827
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7627 contig Csv1_Contig7627:183..1009. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX671880 vs. ExPASy Swiss-Prot
Match: QORH_ARATH (Putative quinone-oxidoreductase homolog, chloroplastic OS=Arabidopsis thaliana GN=At4g13010 PE=2 SV=1)

HSP 1 Score: 351.673 bits (901), Expect = 2.965e-96
Identity = 173/210 (82.38%), Postives = 192/210 (91.43%), Query Frame = -3
Query:  196 PSEVSAAEGSGLPVAGLTAHQALTQSAGVKLDGSGQQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGARNIEFVKSLGADEVLDYKTPDGAALKSPSGRKYDAVIHCATGIPWSTFEPNLGTNGKVIDITPGPSAMLTFALKKLTFSKKQLVPLLLIPKRENLDFLVKLVKEGKLKTVINSKHPLSKAEDAWAESIDGHATGKIIVEP 825
            P EV AAE + LPVAGLTA QALT  AG+KLDG+G++ NILVTAASGGVGHYAVQLAKL N HVTA+CGARNIEFVKSLGADEVLDYKTP+GAALKSPSG+KYDAV+HCA GIP+S FEPNL  NGKVIDITPGP+AM T+A+KK+T SKKQLVPLLLIPK ENL+F+V LVKEGK+KTVI+SKHPLSKAEDAWA+SIDGHATGKIIVEP
Sbjct:  120 PQEVGAAEAAALPVAGLTALQALTNPAGLKLDGTGKKANILVTAASGGVGHYAVQLAKLANAHVTATCGARNIEFVKSLGADEVLDYKTPEGAALKSPSGKKYDAVVHCANGIPFSVFEPNLSENGKVIDITPGPNAMWTYAVKKITMSKKQLVPLLLIPKAENLEFMVNLVKEGKVKTVIDSKHPLSKAEDAWAKSIDGHATGKIIVEP 329          
BLAST of CX671880 vs. ExPASy Swiss-Prot
Match: QORH_SPIOL (Quinone-oxidoreductase homolog, chloroplastic OS=Spinacia oleracea GN=QOR PE=1 SV=1)

HSP 1 Score: 340.117 bits (871), Expect = 8.926e-93
Identity = 165/210 (78.57%), Postives = 188/210 (89.52%), Query Frame = -3
Query:  196 PSEVSAAEGSGLPVAGLTAHQALTQSAGVKLDGSGQQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGARNIEFVKSLGADEVLDYKTPDGAALKSPSGRKYDAVIHCATGIPWSTFEPNLGTNGKVIDITPGPSAMLTFALKKLTFSKKQLVPLLLIPKRENLDFLVKLVKEGKLKTVINSKHPLSKAEDAWAESIDGHATGKIIVEP 825
            P EVSAAEG+ LPVA LTAHQALTQ A +KLDGSG++KNIL+TAASGGVGHYAVQLAKLGNTHVTA+CGARN++FVK LGADEVLDYKTP+GA+L SPSG+KYD V+H A+GIPWSTFEPNL   GKVID+TPGP+AM+TFA KKLTFSKKQLVPLLLIPK  N +++V LVKE KLKTVI+SKHPLSK EDAW+  + GHATGKII+EP
Sbjct:  120 PPEVSAAEGAALPVAALTAHQALTQFANIKLDGSGERKNILITAASGGVGHYAVQLAKLGNTHVTATCGARNLDFVKGLGADEVLDYKTPEGASLTSPSGKKYDYVVHGASGIPWSTFEPNLSEAGKVIDLTPGPTAMMTFAWKKLTFSKKQLVPLLLIPKIPNFEYVVNLVKEKKLKTVIDSKHPLSKGEDAWSRIMGGHATGKIIIEP 329          
BLAST of CX671880 vs. ExPASy Swiss-Prot
Match: RT4I1_BOVIN (Reticulon-4-interacting protein 1, mitochondrial OS=Bos taurus GN=RTN4IP1 PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 5.722e-15
Identity = 65/226 (28.76%), Postives = 104/226 (46.02%), Query Frame = -3
Query:  202 PSEVSAAEGSGLPVAGLTAHQALTQSAGVKLDGSGQQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGARNIEFVKSLGADEVLDYKTPDGAALKSPSGRKYDAVIHCATGI--PWS-TFEPNLGTNGKVIDITPGPSAMLTFALKK------LTFSKKQLVPL---------LLIPKRENLDFLVKLVKEGKLKTVINSKHPLSKAEDAWAESIDGHATGKIIV 825
            P  ++  + + LP   LTA  A+ +  G+  D +   K +L+  ASGGVG +A+Q+ K  + HVTA C     E V+ LGAD+V+DYK+ +  A +  S + +D ++    G    W+  F         V  +TP    M    +        +T   K L              +     LD + +LV+ GK++ VI    P SK  +A+ +   GHA GK ++
Sbjct:  170 PRSLTHTQAASLPYVALTAWSAINKVGGLN-DRNCTGKRVLILGASGGVGTFAIQVMKAWDAHVTAVCSQDASELVRKLGADDVIDYKSGNVEA-QLKSSKPFDFILDNVGGSTETWALKFLKKWSGATYVTLVTPFLLNMDRLGIADGMLQTGVTVGSKTLKHFWQGVHYRWAFFMASGPCLDDIAELVEAGKIQPVIEKTFPFSKVPEAFLKVERGHARGKTVI 393          
BLAST of CX671880 vs. ExPASy Swiss-Prot
Match: RT4I1_HUMAN (Reticulon-4-interacting protein 1, mitochondrial OS=Homo sapiens GN=RTN4IP1 PE=1 SV=2)

HSP 1 Score: 81.2629 bits (199), Expect = 7.473e-15
Identity = 63/231 (27.27%), Postives = 101/231 (43.72%), Query Frame = -3
Query:  202 PSEVSAAEGSGLPVAGLTAHQALTQSAGVKLDGSGQQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGARNIEFVKSLGADEVLDYKT-----------PDGAALKSPSG----------RKYDAVIHCATGIPWSTFEPNLGTNGKVID--ITPGPSAMLTFALKKLTFSKKQLVPLLLIPKRENLDFLVKLVKEGKLKTVINSKHPLSKAEDAWAESIDGHATGKIIV 825
            P  ++  + + LP   LTA  A+ +  G+  D +   K +L+  ASGGVG +A+Q+ K  + HVTA C     E V+ LGAD+V+DYK+           P    L +  G          +K+    +     P+      LG    ++   +T G  A+  F      +          +     LD + +LV  GK++ VI    P SK  +A+ +   GHA GK ++
Sbjct:  170 PKSLTHTQAASLPYVALTAWSAINKVGGLN-DKNCTGKRVLILGASGGVGTFAIQVMKAWDAHVTAVCSQDASELVRKLGADDVIDYKSGSVEEQLKSLKPFDFILDNVGGSTETWAPDFLKKWSGATYVTLVTPFLLNMDRLGIADGMLQTGVTVGSKALKHF------WKGVHYRWAFFMASGPCLDDIAELVDAGKIRPVIEQTFPFSKVPEAFLKVERGHARGKTVI 393          
BLAST of CX671880 vs. ExPASy Swiss-Prot
Match: YBI2_SCHPO (Zinc-type alcohol dehydrogenase-like protein C16A3.02c OS=Schizosaccharomyces pombe GN=SPBC16A3.02c PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 9.136e-13
Identity = 64/217 (29.49%), Postives = 91/217 (41.94%), Query Frame = -3
Query:  199 PSEVSAAEGSGLPVAGLTAHQALTQSAGVKLDGSGQQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGARNIEFVKSLGADEVLDYKTPDGAALKSPSGRKYDAVIHCATG-----IPWSTFEPN---LGTNGKVIDITPGPSAMLTFALKKLTFSKKQLVPLLLIPKRENLDFLVKLVKEGKLKTVINSKHPLSKAEDAWAESIDGHATGKIIVE 825
            P  VS  EG+G  +AGLTA + L +   VK         +++  ASGGVG +AV LAK     VT      N++  KSLGA   LDYK  D    +      YD V  C              +P+    G  G +     G     T   + L  S      +LL   +E L   V  V +  +KTVI+S +      +A+   +     GK+I++
Sbjct:  135 PDGVSFNEGAGFGIAGLTAWEVLVRQMKVK-----PGTKLVIEGASGGVGTFAVALAKALECEVTTISSTENLDLCKSLGATHTLDYK-KDNLVERLADLGPYDFVFDCVNDNVLYRASSKFVKPDGAFFGIGGDITLSYVGSRLSRTLRPRVLGGSSHSYYNILLHVDQEMLRDFVDFVMKHNIKTVIDSVYDFEDTVEAFNRLMTHRCKGKVIIK 345          
BLAST of CX671880 vs. ExPASy Swiss-Prot
Match: QORL_ARATH (Quinone oxidoreductase-like protein At1g23740, chloroplastic OS=Arabidopsis thaliana GN=At1g23740 PE=1 SV=2)

HSP 1 Score: 73.9442 bits (180), Expect = 1.193e-12
Identity = 66/220 (30.00%), Postives = 98/220 (44.55%), Query Frame = -3
Query:  196 PSEVSAAEGSGLPVAGLTAHQALTQ---SAGVKLDGSGQQKNILVTAASGGVGHYAVQLAK--LGNTHVTASCGARNIEFVKSLGADEVLDYKTPDGAALKSPSGRKYDAVIHCATGIPWSTFEPNLGTNGKVIDITPGPSAMLTFALKKLTFSKKQLVPLLLIPKRENLDFLVKL---VKEGKLKTVINSK--HPLSKAEDAWAESIDGHATGKIIVEP 825
            P  +  A+ +GLP+A  TA + L +   SAG         K+ILV   +GGVG   +QLAK   G + V A+     +E V+SLGAD  +DY   +   L       +DA+  C   +        +   GKV+ +T   +                  P        N D L KL   ++ GK+K V++ K   P S+  DA++     HATGK++V P
Sbjct:  197 PKNIDFAQAAGLPLAIETADEGLVRTEFSAG---------KSILVLNGAGGVGSLVIQLAKHVYGASKVAATASTEKLELVRSLGADLAIDYTKENIEDLPDKYDVVFDAIGMCDKAV------KVIKEGGKVVALTGAVTP-----------------PGFRFVVTSNGDVLKKLNPYIESGKVKPVVDPKGPFPFSRVADAFSYLETNHATGKVVVYP 384          
BLAST of CX671880 vs. ExPASy Swiss-Prot
Match: ZADH2_HUMAN (Zinc-binding alcohol dehydrogenase domain-containing protein 2 OS=Homo sapiens GN=ZADH2 PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 6.547e-11
Identity = 45/122 (36.89%), Postives = 63/122 (51.64%), Query Frame = -3
Query:  433 LPVAGLTAHQALTQSAGVKLDGSGQQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA-RNIEFVKSLGADEVLDYKT-PDGAALKSPSGRKYDAVIHCATGIPWSTFEPNLGTNGKVIDI 792
            L V+G TA+ +L +     L G  + K +LVTAA+GG G +A+QL+K    HV  +C +     F+KSLG D  ++YKT P G  LK       D V     G  +      L T G++I I
Sbjct:  153 LLVSGTTAYISLKE-----LGGLSEGKKVLVTAAAGGTGQFAMQLSKKAKCHVIGTCSSDEKSAFLKSLGCDRPINYKTEPVGTVLKQEYPEGVDVVYESVGGAMFDLAVDALATKGRLIVI 269          
The following BLAST results are available for this feature:
BLAST of CX671880 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
QORH_ARATH2.965e-9682.38Putative quinone-oxidoreductase homolog, chloropla... [more]
QORH_SPIOL8.926e-9378.57Quinone-oxidoreductase homolog, chloroplastic OS=S... [more]
RT4I1_BOVIN5.722e-1528.76Reticulon-4-interacting protein 1, mitochondrial O... [more]
RT4I1_HUMAN7.473e-1527.27Reticulon-4-interacting protein 1, mitochondrial O... [more]
YBI2_SCHPO9.136e-1329.49Zinc-type alcohol dehydrogenase-like protein C16A3... [more]
QORL_ARATH1.193e-1230.00Quinone oxidoreductase-like protein At1g23740, chl... [more]
ZADH2_HUMAN6.547e-1136.89Zinc-binding alcohol dehydrogenase domain-containi... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS10_13F11_b Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-13F11-K21-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX671880 ID=CX671880; Name=CX671880; organism=Citrus sinensis; type=EST; length=827bp
TTTTTTTTTTTTTTTTTACCCAAATCCACATATCACTTGGACAACATATC
GTCTAATACACACAAACGATCTAATCACAGCATCTGGTTGAAAGTAATTA
CACGATGAAACAGCACATTTGCCATAAGCTTTGTCCTACAGACAAATTCT
TCAGTGACATAAAACTTCAACAATAAACCAAATCATATGAAGTTATGGCT
CCACAATGATCTTCCCTGTAGCATGGCCATCAATACTCTCAGCCCAAGCA
TCTTCTGCCTTGCTCAGGGGATGCTTTGAGTTGATTACTGTCTTAAGCTT
TCCTTCCTTCACCAACTTAACTAGAAAATCTAGGTTCTCACGCTTGGGAA
TCAGCAGCAGTGGTACCAGCTGCTTTTTGGAGAAGGTAAGTTTCTTCAAA
GCAAAAGTCAGCATCGCACTAGGGCCAGGAGTGATATCTATCACCTTCCC
ATTTGTGCCCAGATTAGGCTCAAAAGTAGACCAGGGAATCCCTGTTGCAC
AGTGGATCACTGCATCGTATTTTCGACCAGATGGACTCTTTAGAGCTGCC
CCGTCAGGTGTCTTGTAATCAAGAACCTCATCAGCCCCTAAACTCTTGAC
AAATTCAATGTTGCGAGCCCCACAAGAGGCAGTCACGTGCGTGTTTCCAA
GCTTCGCCAACTGAACAGCATAGTGACCTACACCCCCTGAGGCAGCAGTT
ACTAGAATGTTTTTCTGTTGCCCACTTCCATCAAGCTTGACACCTGCAGA
TTGAGTAAGGGCCTGGTGAGCAGTGAGACCAGCAACAGGCAAGCCAGAAC
CTTCAGCTGCTGAAACCTCTGATGGCC
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