CX671878

Overview
NameCX671878
Unique NameCX671878
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length862
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7941 contig Csv1_Contig7941:308..1174. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX671878 vs. ExPASy Swiss-Prot
Match: GI1L3_ARATH (Probable gibberellin receptor GID1L3 OS=Arabidopsis thaliana GN=GID1L3 PE=1 SV=1)

HSP 1 Score: 198.364 bits (503), Expect = 4.464e-50
Identity = 99/234 (42.31%), Postives = 146/234 (62.39%), Query Frame = -2
Query:  160 ADSSAFDTLCRRFAKELNAVIISVNYRLSPEHKYPCQYEDGFDVITFIDNNPNFEGFPTDGADLRNCFIGGDSAGGNIAHHVAVKACRREFTNLNIIGVIAIQPGFGGEERTESEIRLASGAPFLNVERIDWFWRAFLPEGSDRDHPAANVFGPNSGGDAISGFDFPATVVIVGGFDPLLDWQKRYCEGLKRCGKEAYLIEYPNAFHGFYSFPELRESCLFINEVRDFMQKQCE 861
            A+S+ +DTLCRR      AV++SVNYR +PE++YPC Y+DG+ V+ +++++            +   F+ GDS+GGNI H+VAV+A     + ++++G I + P FGG ERTESE RL  G  F+ V   DW+WRAFLPEG DR+HPA + FGP S   ++ G  FP ++V+V G D + DWQ +Y EGLK+ G+E  L+    A  GFY  P        ++E+  F+  +C+
Sbjct:  120 ANSAIYDTLCRRLVGLCGAVVVSVNYRRAPENRYPCAYDDGWAVLKWVNSSSWLRSKKDSKVRI---FLAGDSSGGNIVHNVAVRAVE---SRIDVLGNILLNPMFGGTERTESEKRL-DGKYFVTVRDRDWYWRAFLPEGEDREHPACSPFGPRS--KSLEGLSFPKSLVVVAGLDLIQDWQLKYAEGLKKAGQEVKLLYLEQATIGFYLLPNNNHFHTVMDEIAAFVNAECQ 344          
BLAST of CX671878 vs. ExPASy Swiss-Prot
Match: GI1L1_ARATH (Probable gibberellin receptor GID1L1 OS=Arabidopsis thaliana GN=GID1L1 PE=1 SV=1)

HSP 1 Score: 188.734 bits (478), Expect = 3.537e-47
Identity = 95/233 (40.77%), Postives = 140/233 (60.09%), Query Frame = -2
Query:  163 ADSSAFDTLCRRFAKELNAVIISVNYRLSPEHKYPCQYEDGFDVITFIDNNPNFEGFPTDGADLRNCFIGGDSAGGNIAHHVAVKACRREFTNLNIIGVIAIQPGFGGEERTESEIRLASGAPFLNVERIDWFWRAFLPEGSDRDHPAANVFGPNSGGDAISGFDFPATVVIVGGFDPLLDWQKRYCEGLKRCGKEAYLIEYPNAFHGFYSFPELRESCLFINEVRDFMQKQC 861
            A+S+ +DTLCRR       V++SVNYR +PE+ YPC Y+DG+  + ++++    +        +   F+ GDS+GGNIAH+VA++A     + ++++G I + P FGG ERTESE  L  G  F+ V   DW+W+AFLPEG DR+HPA N F P   G ++ G  FP ++V+V G D + DWQ  Y EGLK+ G+E  L+    A  GFY  P        ++E+  F+  +C
Sbjct:  122 ANSAIYDTLCRRLVGLCKCVVVSVNYRRAPENPYPCAYDDGWIALNWVNSRSWLKSKKDSKVHI---FLAGDSSGGNIAHNVALRAGE---SGIDVLGNILLNPMFGGNERTESEKSL-DGKYFVTVRDRDWYWKAFLPEGEDREHPACNPFSPR--GKSLEGVSFPKSLVVVAGLDLIRDWQLAYAEGLKKAGQEVKLMHLEKATVGFYLLPNNNHFHNVMDEISAFVNAEC 345          
BLAST of CX671878 vs. ExPASy Swiss-Prot
Match: GI1L2_ARATH (Probable gibberellin receptor GID1L2 OS=Arabidopsis thaliana GN=GID1L2 PE=1 SV=1)

HSP 1 Score: 188.348 bits (477), Expect = 4.620e-47
Identity = 96/239 (40.17%), Postives = 142/239 (59.41%), Query Frame = -2
Query:  169 ADSSAFDTLCRRFAKELNAVIISVNYRLSPEHKYPCQYEDGFDVITFIDNNPNFEGFPTDGADLR-NCFIGGDSAGGNIAHHVAVKACRREFTNLNIIGVIAIQPGFGGEERTESEIRLASGAPFLNVERIDWFWRAFLPEGSDRDHPAANVFGPNSGGDAISGFDFPATVVIVGGFDPLLDWQKRYCEGLKRCGKEAYLIEYPNAFHGFYSFPE-------LRESCLFINEVRDFMQK 861
            A+S+ +DT CRR       V++SV+YR SPEH+YPC Y+DG++ + ++ +    +     G D     ++ GDS+GGNIAH+VAV+A       + ++G I + P FGG+ERT+SE +   G  F+ ++  DW+WRA+LPEG DRDHPA N FGP   G ++ G +FP ++V+V G D + DWQ  Y +GLK+ G E  L+    A  GFY  P        + E   F++ + D   K
Sbjct:  122 ANSAIYDTFCRRLVTICGVVVVSVDYRRSPEHRYPCAYDDGWNALNWVKSRVWLQ----SGKDSNVYVYLAGDSSGGNIAHNVAVRATNE---GVKVLGNILLHPMFGGQERTQSE-KTLDGKYFVTIQDRDWYWRAYLPEGEDRDHPACNPFGPR--GQSLKGVNFPKSLVVVAGLDLVQDWQLAYVDGLKKTGLEVNLLYLKQATIGFYFLPNNDHFHCLMEELNKFVHSIEDSQSK 350          
BLAST of CX671878 vs. ExPASy Swiss-Prot
Match: GID1_ORYSJ (Gibberellin receptor GID1 OS=Oryza sativa subsp. japonica GN=GID1 PE=1 SV=1)

HSP 1 Score: 185.652 bits (470), Expect = 2.994e-46
Identity = 97/230 (42.17%), Postives = 136/230 (59.13%), Query Frame = -2
Query:  175 ADSSAFDTLCRRFAKELNAVIISVNYRLSPEHKYPCQYEDGFDVITFIDNNPNFEGFPTDGADLR-NCFIGGDSAGGNIAHHVAVKACRREFTNLNIIGVIAIQPGFGGEERTESEIRLASGAPFLNVERIDWFWRAFLPEGSDRDHPAANVFGPNSGGDAISGFDFPATVVIVGGFDPLLDWQKRYCEGLKRCGKEAYLIEYPNAFHGFYSFPELRESCLFINEVRDFM 861
            A S+ +D+LCRRF K    V++SVNYR +PEH+YPC Y+DG+  + ++ + P    F   G D +   F+ GDS+GGNIAHHVAV+A       + + G I +   FGG ERTESE RL  G  F+ ++  DW+W+A+LPE +DRDHPA N FGPN  G  + G  F  +++IV G D   D Q  Y + L+  G    +++  NA  GFY  P        + E+ DF+
Sbjct:  129 ASSTIYDSLCRRFVKLSKGVVVSVNYRRAPEHRYPCAYDDGWTALKWVMSQP----FMRSGGDAQARVFLSGDSSGGNIAHHVAVRAADE---GVKVCGNILLNAMFGGTERTESERRL-DGKYFVTLQDRDWYWKAYLPEDADRDHPACNPFGPN--GRRLGGLPFAKSLIIVSGLDLTCDRQLAYADALREDGHHVKVVQCENATVGFYLLPNTVHYHEVMEEISDFL 348          
The following BLAST results are available for this feature:
BLAST of CX671878 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
GI1L3_ARATH4.464e-5042.31Probable gibberellin receptor GID1L3 OS=Arabidopsi... [more]
GI1L1_ARATH3.537e-4740.77Probable gibberellin receptor GID1L1 OS=Arabidopsi... [more]
GI1L2_ARATH4.620e-4740.17Probable gibberellin receptor GID1L2 OS=Arabidopsi... [more]
GID1_ORYSJ2.994e-4642.17Gibberellin receptor GID1 OS=Oryza sativa subsp. j... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS10_13F10_b Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-13F10-K19-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX671878 ID=CX671878; Name=CX671878; organism=Citrus sinensis; type=EST; length=862bp
TTTTTTTTTTTTTGTTTTCAATGAGGATTTCGCATTTTATTAAATTACAG
GAATGACTTTATTTATAATACTATGAAAATCTATCTCACACTTTGTTAAA
ACATTAACCCTCATTTAAATTTAAAAAAAAAAATTGGGTGTATTTTATTC
TTTCAGTTTCTCACACTGCTTTTGCATAAAATCCCTCACTTCGTTGATAA
ACAAACAAGACTCCCGCAGCTCCGGAAAGGAATAGAACCCATGAAATGCA
TTCGGATACTCAATCAAATAAGCTTCTTTCCCGCATCTCTTCAACCCTTC
ACAGTACCTCTTTTGCCAGTCGAGTAGAGGATCAAACCCTCCAACAATCA
CAACCGTCGCCGGAAAATCAAACCCCGAAATAGCATCACCACCAGAATTC
GGCCCAAAAACATTCGCAGCCGGGTGGTCCCTGTCTGACCCTTCCGGCAG
AAACGCTCTCCAGAACCAATCAATACGCTCCACGTTGAGAAACGGAGCCC
CGGAAGCAAGCCTTATTTCGGATTCCGTCCTTTCTTCTCCGCCGAAACCT
GGCTGTATCGCTATGACTCCAATGATATTCAAATTTGTAAACTCTCTTCT
ACAAGCCTTGACCGCCACGTGGTGAGCTATGTTACCTCCTGCACTGTCGC
CGCCGATGAAACAGTTCCTTAGATCGGCGCCGTCCGTCGGAAAGCCTTCA
AAGTTGGGGTTATTGTCGATGAACGTAATGACATCGAAGCCATCTTCGTA
CTGACATGGGTATTTATGCTCAGGCGAGAGCCGGTAATTAACGGAGATGA
TGACGGCGTTAAGTTCTTTGGCGAATCTTCGGCAGAGGGTGTCAAAAGCT
GATGAGTCGGCG
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