CX671877

Overview
NameCX671877
Unique NameCX671877
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length711
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX671877_ssr145 microsatellite CX671877_ssr145:145..156. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig9717 contig Csv1_Contig9717:28..738. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX671877 vs. ExPASy Swiss-Prot
Match: PPDK_FLATR (Pyruvate, phosphate dikinase, chloroplastic OS=Flaveria trinervia GN=PPDK PE=2 SV=2)

HSP 1 Score: 141.354 bits (355), Expect = 4.718e-33
Identity = 78/124 (62.90%), Postives = 86/124 (69.35%), Query Frame = 3
Query:  345 PATAAVPALR--GRMKPKAILTPVSDATSPTTEKRVFTFGKGRSEGNKGMKSLLGGKGANLAEMSTIGLSVPPGLTISTEACQEYQQNGKKXXXXXXXXXXXXXXXXXXXMGALLGDPSKPLLL 710
            PA  + P LR  G   P+A+L PVS   + T +KRVFTFGKGRSEGN+ MKSLLGGKGANLAEMS+IGLSVPPGLTISTEAC+EYQQNGK                    M A LGDPSKPLLL
Sbjct:   49 PARVSRPELRSSGLTPPRAVLNPVSPPVT-TAKKRVFTFGKGRSEGNRDMKSLLGGKGANLAEMSSIGLSVPPGLTISTEACEEYQQNGKSLPPGLWDEISEGLDYVQKEMSASLGDPSKPLLL 171          
BLAST of CX671877 vs. ExPASy Swiss-Prot
Match: PPDK_FLAPR (Pyruvate, phosphate dikinase, chloroplastic OS=Flaveria pringlei GN=PPDK PE=1 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 4.718e-33
Identity = 75/112 (66.96%), Postives = 82/112 (73.21%), Query Frame = 3
Query:  375 GRMKPKAILTPVSDATSPTTEKRVFTFGKGRSEGNKGMKSLLGGKGANLAEMSTIGLSVPPGLTISTEACQEYQQNGKKXXXXXXXXXXXXXXXXXXXMGALLGDPSKPLLL 710
            G   P+A+L PVS   + TT+KRVFTFGKGRSEGNK MKSLLGGKGANLAEM++IGLSVPPGLTISTEAC+EYQQNGKK                   M A LGDPSKPLLL
Sbjct:   64 GLTPPRAVLNPVSPPVT-TTKKRVFTFGKGRSEGNKDMKSLLGGKGANLAEMASIGLSVPPGLTISTEACEEYQQNGKKLPPGLWDEILEGLRYVQKEMSASLGDPSKPLLL 174          
BLAST of CX671877 vs. ExPASy Swiss-Prot
Match: PPDK1_ARATH (Pyruvate, phosphate dikinase 1, chloroplastic OS=Arabidopsis thaliana GN=PPDK PE=1 SV=2)

HSP 1 Score: 139.813 bits (351), Expect = 1.373e-32
Identity = 75/123 (60.98%), Postives = 84/123 (68.29%), Query Frame = 3
Query:  342 QPATAAVPALRGRMKPKAILTPVSDATSPTTEKRVFTFGKGRSEGNKGMKSLLGGKGANLAEMSTIGLSVPPGLTISTEACQEYQQNGKKXXXXXXXXXXXXXXXXXXXMGALLGDPSKPLLL 710
            Q  + A   L    K +AIL+PVSD  +   +KRVFTFGKGRSEGNKGMKSLLGGKGANLAEM++IGLSVPPGLTISTEACQ+YQ  GKK                   +GA L DPSKPLLL
Sbjct:   59 QRLSIAKTGLHRETKARAILSPVSDPAASIAQKRVFTFGKGRSEGNKGMKSLLGGKGANLAEMASIGLSVPPGLTISTEACQQYQIAGKKLPEGLWEEILEGLSFIERDIGASLADPSKPLLL 181          
BLAST of CX671877 vs. ExPASy Swiss-Prot
Match: PPDK_MESCR (Pyruvate, phosphate dikinase, chloroplastic OS=Mesembryanthemum crystallinum GN=PPD PE=2 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 1.793e-32
Identity = 72/110 (65.45%), Postives = 83/110 (75.45%), Query Frame = 3
Query:  381 MKPKAILTPVSDATSPTTEKRVFTFGKGRSEGNKGMKSLLGGKGANLAEMSTIGLSVPPGLTISTEACQEYQQNGKKXXXXXXXXXXXXXXXXXXXMGALLGDPSKPLLL 710
            ++ +A++ P SD TS T  KRVFTFGKGRSEGNKGMKSLLGGKGANLAEM++IGLSVPPGLTISTEACQEYQ++GK+                   MG+ LGDPSKPLLL
Sbjct:   60 LRSQAVMAPASDPTS-TAIKRVFTFGKGRSEGNKGMKSLLGGKGANLAEMASIGLSVPPGLTISTEACQEYQEHGKQLSAGLWEEILEGLRVIEKDMGSYLGDPSKPLLL 168          
BLAST of CX671877 vs. ExPASy Swiss-Prot
Match: PPDK_FLABI (Pyruvate, phosphate dikinase, chloroplastic OS=Flaveria bidentis PE=1 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 3.058e-32
Identity = 77/124 (62.10%), Postives = 85/124 (68.55%), Query Frame = 3
Query:  345 PATAAVPALR--GRMKPKAILTPVSDATSPTTEKRVFTFGKGRSEGNKGMKSLLGGKGANLAEMSTIGLSVPPGLTISTEACQEYQQNGKKXXXXXXXXXXXXXXXXXXXMGALLGDPSKPLLL 710
            PA  + P LR  G   P+A+L PVS   + T +KRVFTFGKGRSEGN+ MKSLLGGKGANLAEMS+IGLSVPPGLTISTEAC+EYQQNGK                    M A LGDPSKPL L
Sbjct:   49 PARVSRPELRSSGLTPPRAVLNPVSPPVT-TAKKRVFTFGKGRSEGNRDMKSLLGGKGANLAEMSSIGLSVPPGLTISTEACEEYQQNGKSLPPGLWDEISEGLDYVQKEMSASLGDPSKPLPL 171          
BLAST of CX671877 vs. ExPASy Swiss-Prot
Match: PPDK_FLABR (Pyruvate, phosphate dikinase, chloroplastic OS=Flaveria brownii GN=PPDK PE=1 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 1.982e-31
Identity = 73/112 (65.18%), Postives = 80/112 (71.43%), Query Frame = 3
Query:  375 GRMKPKAILTPVSDATSPTTEKRVFTFGKGRSEGNKGMKSLLGGKGANLAEMSTIGLSVPPGLTISTEACQEYQQNGKKXXXXXXXXXXXXXXXXXXXMGALLGDPSKPLLL 710
            G   P+A+L PVS   + TT+KRVFTFGKG SEGNK MKSLLGGKGANLAEM++IGLSVPPGLTISTEAC+EYQQNGKK                   M A LGDPSK LLL
Sbjct:   63 GLTLPRAVLNPVSPPVT-TTKKRVFTFGKGNSEGNKDMKSLLGGKGANLAEMASIGLSVPPGLTISTEACEEYQQNGKKLPPGLWDEILEGLQYVQKEMSASLGDPSKALLL 173          
BLAST of CX671877 vs. ExPASy Swiss-Prot
Match: PPDK1_ORYSJ (Pyruvate, phosphate dikinase 1, chloroplastic OS=Oryza sativa subsp. japonica GN=PPDK1 PE=1 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 2.962e-27
Identity = 71/153 (46.41%), Postives = 89/153 (58.17%), Query Frame = 3
Query:  267 GTRCEH----AGNKCFLETKAGAGRYDQPQPATAAVPALRGRMKP-KAILTPVSDATSPTTEKRVFTFGKGRSEGNKGMKSLLGGKGANLAEMSTIGLSVPPGLTISTEACQEYQQNGKKXXXXXXXXXXXXXXXXXXXMGALLGDPSKPLLL 710
            G RC      AG +  +  +A  G+ +    + +   A  G   P +A+  P+     PTT+KRVF FGKG+SEGNK MK LLGGKGANLAEM++IGLSVPPG T+STEACQ+YQ  GK                    M A LGDP++PLLL
Sbjct:   18 GRRCRDGAAAAGRRSVVAQRARHGKPEVAIRSGSGGSARGGHCSPLRAVAAPI-----PTTKKRVFHFGKGKSEGNKAMKDLLGGKGANLAEMASIGLSVPPGFTVSTEACQQYQAAGKTLPAGLWEEIVEGLQWVEEYMAARLGDPARPLLL 165          
BLAST of CX671877 vs. ExPASy Swiss-Prot
Match: PPDK1_MAIZE (Pyruvate, phosphate dikinase 1, chloroplastic OS=Zea mays GN=PPDK1 PE=1 SV=2)

HSP 1 Score: 118.242 bits (295), Expect = 4.277e-26
Identity = 70/146 (47.95%), Postives = 80/146 (54.79%), Query Frame = 3
Query:  273 RCEHAGNKCFLETKAGAGRYDQPQPATAAVPALRGRMKPKAILTPVSDATSPTTEKRVFTFGKGRSEGNKGMKSLLGGKGANLAEMSTIGLSVPPGLTISTEACQEYQQNGKKXXXXXXXXXXXXXXXXXXXMGALLGDPSKPLLL 710
            R  HA     + + +GAGR     P  A V A                A   TT+KRVF FGKG+SEGNK MK LLGGKGANLAEM++IGLSVPPG T+STEACQ+YQ  G                     MGA LGDP +PLLL
Sbjct:   36 RPPHAKAAGVIRSDSGAGRGQHCSPLRAVVDA----------------APIQTTKKRVFHFGKGKSEGNKTMKELLGGKGANLAEMASIGLSVPPGFTVSTEACQQYQDAGCALPAGLWAEIVDGLQWVEEYMGATLGDPQRPLLL 165          
BLAST of CX671877 vs. ExPASy Swiss-Prot
Match: PPDK2_ORYSJ (Pyruvate, phosphate dikinase 2 OS=Oryza sativa subsp. japonica GN=PPDK2 PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.288e-22
Identity = 56/99 (56.57%), Postives = 65/99 (65.66%), Query Frame = 3
Query:  414 DATSPTTEKRVFTFGKGRSEGNKGMKSLLGGKGANLAEMSTIGLSVPPGLTISTEACQEYQQNGKKXXXXXXXXXXXXXXXXXXXMGALLGDPSKPLLL 710
            D  +    +RVF FGKGRS+GNK MK LLGGKGANLAEM++IGLSVPPG T+STEACQ+YQ   K                    MGA+LGDP +PLLL
Sbjct:    8 DGAAEAVGQRVFHFGKGRSDGNKTMKDLLGGKGANLAEMASIGLSVPPGFTVSTEACQQYQAQ-KAMPAGLWDEILAALTWVEGNMGAVLGDPRRPLLL 105          
BLAST of CX671877 vs. ExPASy Swiss-Prot
Match: PPDK2_MAIZE (Pyruvate, phosphate dikinase 2 (Fragment) OS=Zea mays GN=PPDK2 PE=2 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 7.812e-20
Identity = 44/59 (74.58%), Postives = 53/59 (89.83%), Query Frame = 3
Query:  432 TEKRVFTFGKGRSEGNKGMKSLLGGKGANLAEMSTIGLSVPPGLTISTEACQEYQQNGK 608
            + +RVF FGKG+SEGNK MK LLGGKGANLAEM++IGLSVPPG T+STEACQ+YQ+ G+
Sbjct:    9 SSQRVFHFGKGKSEGNKNMKELLGGKGANLAEMASIGLSVPPGFTVSTEACQQYQEAGR 67          
The following BLAST results are available for this feature:
BLAST of CX671877 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
PPDK_FLATR4.718e-3362.90Pyruvate, phosphate dikinase, chloroplastic OS=Fla... [more]
PPDK_FLAPR4.718e-3366.96Pyruvate, phosphate dikinase, chloroplastic OS=Fla... [more]
PPDK1_ARATH1.373e-3260.98Pyruvate, phosphate dikinase 1, chloroplastic OS=A... [more]
PPDK_MESCR1.793e-3265.45Pyruvate, phosphate dikinase, chloroplastic OS=Mes... [more]
PPDK_FLABI3.058e-3262.10Pyruvate, phosphate dikinase, chloroplastic OS=Fla... [more]
PPDK_FLABR1.982e-3165.18Pyruvate, phosphate dikinase, chloroplastic OS=Fla... [more]
PPDK1_ORYSJ2.962e-2746.41Pyruvate, phosphate dikinase 1, chloroplastic OS=O... [more]
PPDK1_MAIZE4.277e-2647.95Pyruvate, phosphate dikinase 1, chloroplastic OS=Z... [more]
PPDK2_ORYSJ1.288e-2256.57Pyruvate, phosphate dikinase 2 OS=Oryza sativa sub... [more]
PPDK2_MAIZE7.812e-2074.58Pyruvate, phosphate dikinase 2 (Fragment) OS=Zea m... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS10_13F09_g Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-13F09-K17-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX671877 ID=CX671877; Name=CX671877; organism=Citrus sinensis; type=EST; length=711bp
ATCAACCCACACACGCACACAGACGTGCCCATATATCTTTCCTTTCTCCT
TCAATCTTCTGCAGTATATCAGTAGTAGAAGGGAAAAAAATGTGTTCAAT
AACGAATATGAAGGGAACGGTCATAAGAAGTACACCAGACGTATGCAGCA
GCAGCAGTACTCGGAGGCTGTACACGTTGAAGGCGAAGTATGCGGACGAC
GCCGATCTTCTCAGTCTTAGAGAGAACCATTCGTTATGCCTACTTCGTTT
GAGCCGTTCTTGCAGAGGCACTCGCTGTGAACATGCGGGTAATAAATGCT
TCTTAGAAACAAAGGCAGGGGCAGGAAGATATGACCAGCCTCAGCCTGCA
ACAGCAGCGGTACCAGCACTACGCGGTCGTATGAAACCAAAAGCAATCCT
CACTCCTGTTTCAGACGCAACATCACCAACTACAGAAAAGCGGGTGTTTA
CTTTCGGGAAAGGAAGGAGTGAAGGCAACAAGGGCATGAAGTCCTTGCTG
GGGGGCAAGGGAGCAAACCTGGCGGAAATGTCAACCATTGGACTATCTGT
GCCTCCCGGACTCACCATATCTACAGAAGCATGCCAGGAGTATCAGCAGA
ATGGAAAGAAGCTATCAGAAGGCTTGTGGGAAGAGGTATTGGAAGGCCTG
GAGACGGTGGAGAAAGAAATGGGAGCTCTTCTCGGCGACCCTTCCAAGCC
TCTTCTCCTCT
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