CX671875

Overview
NameCX671875
Unique NameCX671875
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length777
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX671875_ssr397 microsatellite CX671875_ssr397:397..417. BLAST: Citrus ESTs to Prunus persica proteins V1
CX671875_ssr500 microsatellite CX671875_ssr500:500..511. BLAST: Citrus ESTs to Prunus persica proteins V1
CX671875_ssr522 microsatellite CX671875_ssr522:522..536. BLAST: Citrus ESTs to Prunus persica proteins V1
CX671875_ssr44 microsatellite CX671875_ssr44:44..55. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig5107 contig Csv1_Contig5107:1..777. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX671875 vs. ExPASy Swiss-Prot
Match: KRP5_ORYSJ (Cyclin-dependent kinase inhibitor 5 OS=Oryza sativa subsp. japonica GN=KRP5 PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 4.052e-12
Identity = 35/74 (47.30%), Postives = 52/74 (70.27%), Query Frame = 3 
Query:  558 IEASFGENALE--SEARERGTRESTPCSLIRDPEIIRTPGSSNRPTSSMQN-REAQISACSLIPTAHEMDKFFA 770
            +E SFG+N L+   +A ER TRE+TPCSLIR  E+I TPGS+ +  +S+ + R  + S C  +P++ EM++FFA
Sbjct:  113 VEVSFGDNVLDLDGDAMERSTRETTPCSLIRSSEMISTPGSTTKTNTSISSRRRMETSVCRYVPSSLEMEEFFA 186
[Close]
BLAST of CX671875 vs. ExPASy Swiss-Prot
Match: KRP4_ORYSJ (Cyclin-dependent kinase inhibitor 4 OS=Oryza sativa subsp. japonica GN=KRP4 PE=2 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 2.011e-11
Identity = 38/72 (52.78%), Postives = 49/72 (68.06%), Query Frame = 3 
Query:  561 EASFG-ENALESEARERGTRESTPCSLIRDPEIIRTPGSSNRPTSSMQNREAQISA-CSLIPTAHEMDKFFA 770
            E SFG EN LE EA ER TRE+TPCSLIRDP+ I TPGS+ R + S  + + Q     ++IP + E++ FFA
Sbjct:   89 EVSFGGENVLELEAMERNTRETTPCSLIRDPDTISTPGSTTRRSHSSSHCKVQTPVRHNIIPASAELEAFFA 160
The following BLAST results are available for this feature:
BLAST of CX671875 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
KRP5_ORYSJ4.052e-1247.30Cyclin-dependent kinase inhibitor 5 OS=Oryza sativ... [more]
KRP4_ORYSJ2.011e-1152.78Cyclin-dependent kinase inhibitor 4 OS=Oryza sativ... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS10_13F08_g Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-13F08-K15-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX671875 ID=CX671875; Name=CX671875; organism=Citrus sinensis; type=EST; length=777bp
ATTTTCTCTTCTTCCAACATACACTTCTTTCGCTCTTTCTCTCTCTTTCT
TTCTTCATGAAAGCTTAATTTTATAAGCTTTTAGCTTTAAAAAGGGTGCT
GTAGCTTTTCCTTAGTTTTAGTTATTAGTTACCGTTCATTTTCATTTTCA
TTTTTTTTTATTTGGGGGTGTGTGTTTGCTTGATGGGCAAGTACATGAGG
AAGGCCAAAACGGCGGCCGGTGAGGTGGCCGTTATGGAGGTGACCCAGTC
ATCGCCACTCGGCGTTCGCACTCGAGCCAAAACCCTAGCCCTCCAAAAGG
CTACCTCTGCTGGTGCTGGTGGCAGTGGCTCTTACCTTCAGCTGCGGAGT
CGGCGGCTCGAGAAGCCGGCGGCTCTGGTGAATGAGACTTCGGGCCGGAG
GAGGAGGAGGAGGAGGAAGGAGAATTCGAGGGCACGTGAGAGGTCACGTG
GGAAGAAAAATGTTGATGAGGTGGAGGAAGAGAAGGAGACTGATGATGTT
GCTGCTGCTGCTGTTGAAGTTGAAGAAGAAGAAGAAAATGGCAATAAGAA
TTTGGACATTGAAGCTTCCTTTGGTGAAAATGCTTTGGAAAGTGAAGCAA
GAGAAAGGGGCACTAGGGAGTCCACTCCATGCAGCTTGATAAGGGACCCA
GAGATCATAAGGACCCCGGGTTCCAGCAACAGGCCTACCAGCTCAATGCA
GAACAGGGAAGCACAGATTTCTGCGTGCAGTCTCATCCCAACAGCACATG
AAATGGATAAGTTCTTTGCTGATACAG
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