CX671867

Overview
NameCX671867
Unique NameCX671867
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length771
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10901 contig Csv1_Contig10901:859..1628. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX671867 vs. ExPASy Swiss-Prot
Match: G3PA_SPIOL (Glyceraldehyde-3-phosphate dehydrogenase A, chloroplastic OS=Spinacia oleracea GN=GAPA PE=1 SV=2)

HSP 1 Score: 197.978 bits (502), Expect = 4.883e-50
Identity = 109/167 (65.27%), Postives = 111/167 (66.47%), Query Frame = -2
Query:  201 GIIKGTMTTTHSYTGDQXXXXXXXXXXXXXXXXXLNIVPTSTXXXXXXXXXXXXXXXXLNGIALRVPTPNXXXXXXXXXVSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXVMGDDMVKVIAWYDNEWGYSQRVVDLADIVANNWK 701
            GIIKGTMTTTHSYTGDQ                 LNIVPTST                LNGIALRVPTPN         VSKKTFAEEVNAAFRESADNELKGILSVCDEPLVS+DFRC             VMGDDMVKVIAWYDNEWGYSQRVVDLADIVAN W+
Sbjct:  235 GIIKGTMTTTHSYTGDQRLLDASHRDLRRARAACLNIVPTSTGAAKAVALVLPNLKGKLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSIDFRCTDVSSTIDSSLTMVMGDDMVKVIAWYDNEWGYSQRVVDLADIVANKWQ 401          
BLAST of CX671867 vs. ExPASy Swiss-Prot
Match: G3PA_ARATH (Glyceraldehyde-3-phosphate dehydrogenase A, chloroplastic OS=Arabidopsis thaliana GN=GAPA PE=1 SV=3)

HSP 1 Score: 195.667 bits (496), Expect = 2.423e-49
Identity = 108/167 (64.67%), Postives = 110/167 (65.87%), Query Frame = -2
Query:  201 GIIKGTMTTTHSYTGDQXXXXXXXXXXXXXXXXXLNIVPTSTXXXXXXXXXXXXXXXXLNGIALRVPTPNXXXXXXXXXVSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXVMGDDMVKVIAWYDNEWGYSQRVVDLADIVANNWK 701
            GIIKGTMTTTHSYTGDQ                 LNIVPTST                LNGIALRVPTPN         VSKKTFAEEVNAAFR+SA+ ELKGIL VCDEPLVSVDFRC             VMGDDMVKVIAWYDNEWGYSQRVVDLADIVANNWK
Sbjct:  230 GIIKGTMTTTHSYTGDQRLLDASHRDLRRARAAALNIVPTSTGAAKAVALVLPNLKGKLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRDSAEKELKGILDVCDEPLVSVDFRCSDFSTTIDSSLTMVMGDDMVKVIAWYDNEWGYSQRVVDLADIVANNWK 396          
BLAST of CX671867 vs. ExPASy Swiss-Prot
Match: G3PA_SINAL (Glyceraldehyde-3-phosphate dehydrogenase A, chloroplastic (Fragment) OS=Sinapis alba GN=GAPA PE=2 SV=1)

HSP 1 Score: 194.512 bits (493), Expect = 5.398e-49
Identity = 107/167 (64.07%), Postives = 110/167 (65.87%), Query Frame = -2
Query:  201 GIIKGTMTTTHSYTGDQXXXXXXXXXXXXXXXXXLNIVPTSTXXXXXXXXXXXXXXXXLNGIALRVPTPNXXXXXXXXXVSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXVMGDDMVKVIAWYDNEWGYSQRVVDLADIVANNWK 701
            GIIKGTMTTTHSYTGDQ                 LNIVPTST                LNGIALRVPTPN         VSKKTFAEEVNAAFR++A+ ELKGIL VCDEPLVSVDFRC             VMGDDMVKVIAWYDNEWGYSQRVVDLADIVANNWK
Sbjct:   67 GIIKGTMTTTHSYTGDQRLLDASHRDLRRARAAALNIVPTSTGAAKAVALVLPNLKGKLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRDAAEKELKGILDVCDEPLVSVDFRCSDVSSTIDSSLTMVMGDDMVKVIAWYDNEWGYSQRVVDLADIVANNWK 233          
BLAST of CX671867 vs. ExPASy Swiss-Prot
Match: G3PA_PEA (Glyceraldehyde-3-phosphate dehydrogenase A, chloroplastic OS=Pisum sativum GN=GAPA PE=2 SV=2)

HSP 1 Score: 191.43 bits (485), Expect = 4.570e-48
Identity = 107/167 (64.07%), Postives = 108/167 (64.67%), Query Frame = -2
Query:  201 GIIKGTMTTTHSYTGDQXXXXXXXXXXXXXXXXXLNIVPTSTXXXXXXXXXXXXXXXXLNGIALRVPTPNXXXXXXXXXVSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXVMGDDMVKVIAWYDNEWGYSQRVVDLADIVANNWK 701
            GIIKGTMTTTHSYTGDQ                 LNIVPTST                LNGIALRVPTPN         VSKKTFAEEVN AFRESA  EL GILSVCDEPLVSVDFRC             VMGDD+VKVIAWYDNEWGYSQRVVDLADIVANNWK
Sbjct:  239 GIIKGTMTTTHSYTGDQRLLDASHRDLRRARAAALNIVPTSTGAAKAVALVLPTLKGKLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNEAFRESAAKELTGILSVCDEPLVSVDFRCTDVSSTVDSSLTMVMGDDLVKVIAWYDNEWGYSQRVVDLADIVANNWK 405          
BLAST of CX671867 vs. ExPASy Swiss-Prot
Match: G3PA_TOBAC (Glyceraldehyde-3-phosphate dehydrogenase A, chloroplastic (Fragment) OS=Nicotiana tabacum GN=GAPA PE=2 SV=1)

HSP 1 Score: 186.808 bits (473), Expect = 1.126e-46
Identity = 103/167 (61.68%), Postives = 105/167 (62.87%), Query Frame = -2
Query:  201 GIIKGTMTTTHSYTGDQXXXXXXXXXXXXXXXXXLNIVPTSTXXXXXXXXXXXXXXXXLNGIALRVPTPNXXXXXXXXXVSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXVMGDDMVKVIAWYDNEWGYSQRVVDLADIVANNWK 701
            GIIKGTMTTTHSYTGDQ                 LNIVPTST                   + LRVPTPN         VSKKTFAEEVNAAFRE+AD ELKGIL VCDEPLVSVDFRC             VMGDDMVKVIAWYDNEWGYSQRVVDLADIVAN WK
Sbjct:  226 GIIKGTMTTTHSYTGDQRLLDASHRDLRRARAAALNIVPTSTGAAKAVALSSQALRGSSMALPLRVPTPNVSVVDLVVQVSKKTFAEEVNAAFREAADKELKGILDVCDEPLVSVDFRCSDVSSTVDASLTMVMGDDMVKVIAWYDNEWGYSQRVVDLADIVANQWK 392          
BLAST of CX671867 vs. ExPASy Swiss-Prot
Match: G3PA_MAIZE (Glyceraldehyde-3-phosphate dehydrogenase A, chloroplastic OS=Zea mays GN=GAPA PE=2 SV=1)

HSP 1 Score: 180.644 bits (457), Expect = 8.067e-45
Identity = 101/167 (60.48%), Postives = 104/167 (62.28%), Query Frame = -2
Query:  201 GIIKGTMTTTHSYTGDQXXXXXXXXXXXXXXXXXLNIVPTSTXXXXXXXXXXXXXXXXLNGIALRVPTPNXXXXXXXXXVSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXVMGDDMVKVIAWYDNEWGYSQRVVDLADIVANNWK 701
            GIIKGTMTTTHSYTGDQ                 LNIVPTST                LNGIALRVPTPN         VSKKT AEEVN AFR++A NEL GIL VCD PLVSVDFRC             VMGDDMVKVI+WYDNEWGYSQRVVDLADI AN WK
Sbjct:  237 GIIKGTMTTTHSYTGDQRLLDASHRDLRRARAAALNIVPTSTGAAKAVSLVLPNLKGKLNGIALRVPTPNVSVVDLVVQVSKKTLAEEVNQAFRDAAANELTGILEVCDVPLVSVDFRCSDVSSTIDASLTMVMGDDMVKVISWYDNEWGYSQRVVDLADICANQWK 403          
BLAST of CX671867 vs. ExPASy Swiss-Prot
Match: G3PB_TOBAC (Glyceraldehyde-3-phosphate dehydrogenase B, chloroplastic (Fragment) OS=Nicotiana tabacum GN=GAPB PE=2 SV=1)

HSP 1 Score: 175.252 bits (443), Expect = 3.389e-43
Identity = 97/167 (58.08%), Postives = 106/167 (63.47%), Query Frame = -2
Query:  204 GIIKGTMTTTHSYTGDQXXXXXXXXXXXXXXXXXLNIVPTSTXXXXXXXXXXXXXXXXLNGIALRVPTPNXXXXXXXXXVSKKTF-AEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXVMGDDMVKVIAWYDNEWGYSQRVVDLADIVANNW 701
            GI+KGTMTTTHSYTGDQ                 LNIVPTST                LNGIALRVPTPN         V+KK   AE+VNAAFR++AD  LKG+L+VCDEPLVSVDFRC             VMGDDMVKV+AWYDNEWGYSQRVVDLA +VANNW
Sbjct:  225 GIVKGTMTTTHSYTGDQRLLDASHRDLRRARAAALNIVPTSTGAAKAVSLVLPQLKGKLNGIALRVPTPNVSVVDLVVNVAKKGITAEDVNAAFRKAADGPLKGVLAVCDEPLVSVDFRCSDVSSTIDSSLTMVMGDDMVKVVAWYDNEWGYSQRVVDLAHLVANNW 391          
BLAST of CX671867 vs. ExPASy Swiss-Prot
Match: G3PB_PEA (Glyceraldehyde-3-phosphate dehydrogenase B, chloroplastic OS=Pisum sativum GN=GAPB PE=2 SV=2)

HSP 1 Score: 168.703 bits (426), Expect = 3.172e-41
Identity = 95/167 (56.89%), Postives = 103/167 (61.68%), Query Frame = -2
Query:  204 GIIKGTMTTTHSYTGDQXXXXXXXXXXXXXXXXXLNIVPTSTXXXXXXXXXXXXXXXXLNGIALRVPTPNXXXXXXXXXVSKKTF-AEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXVMGDDMVKVIAWYDNEWGYSQRVVDLADIVANNW 701
            GI+KGTMTTTHSYTGDQ                 LNIVPTST                LNGIALRVPTPN         V+KK   AE+VNAAFR++A+  LKGIL VCD PLVSVDFRC             VMGDDMVKV+AWYDNEWGYSQRVVDLA +VAN W
Sbjct:  256 GIVKGTMTTTHSYTGDQRLLDASHRDLRRARAAALNIVPTSTGAAKAVSLVLPQLKGKLNGIALRVPTPNVSVVDLVVNVAKKGISAEDVNAAFRKAAEGPLKGILDVCDVPLVSVDFRCSDVSTTIDSSLTMVMGDDMVKVVAWYDNEWGYSQRVVDLAHLVANKW 422          
BLAST of CX671867 vs. ExPASy Swiss-Prot
Match: G3PA_CHLRE (Glyceraldehyde-3-phosphate dehydrogenase A, chloroplastic OS=Chlamydomonas reinhardtii GN=GAPA PE=1 SV=1)

HSP 1 Score: 166.777 bits (421), Expect = 1.205e-40
Identity = 90/166 (54.22%), Postives = 101/166 (60.84%), Query Frame = -2
Query:  204 GIIKGTMTTTHSYTGDQXXXXXXXXXXXXXXXXXLNIVPTSTXXXXXXXXXXXXXXXXLNGIALRVPTPNXXXXXXXXXVSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXVMGDDMVKVIAWYDNEWGYSQRVVDLADIVANNW 701
            GI+KGTMTTTHSYTGDQ                 LNIVPT+T                LNGIALRVPTP          V KKTFAEEVNAAFRE+A+  +KG+L V D PLVS+DF+C             VMGDDMVKV+AWYDNEWGYSQRVVDLA++ A  W
Sbjct:  207 GIVKGTMTTTHSYTGDQRLLDASHRDLRRARAAALNIVPTTTGAAKAVSLVLPSLKGKLNGIALRVPTPTVSVVDLVVQVEKKTFAEEVNAAFREAANGPMKGVLHVEDAPLVSIDFKCTDQSTSIDASLTMVMGDDMVKVVAWYDNEWGYSQRVVDLAEVTAKKW 372          
BLAST of CX671867 vs. ExPASy Swiss-Prot
Match: G3PB_ARATH (Glyceraldehyde-3-phosphate dehydrogenase B, chloroplastic OS=Arabidopsis thaliana GN=GAPB PE=1 SV=2)

HSP 1 Score: 163.696 bits (413), Expect = 1.020e-39
Identity = 92/167 (55.09%), Postives = 101/167 (60.48%), Query Frame = -2
Query:  204 GIIKGTMTTTHSYTGDQXXXXXXXXXXXXXXXXXLNIVPTSTXXXXXXXXXXXXXXXXLNGIALRVPTPNXXXXXXXXXVSKKTF-AEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXVMGDDMVKVIAWYDNEWGYSQRVVDLADIVANNW 701
            GI+KGTMTTTHSYTGDQ                 LNIVPTST                LNGIALRVPTPN         V KK   AE+VN AFR++A+  +KGIL VCD PLVSVDFRC             VMGDDMVKV+AWYDNEWGYSQRVVDLA +VA+ W
Sbjct:  252 GIVKGTMTTTHSYTGDQRLLDASHRDLRRARAAALNIVPTSTGAAKAVSLVLPQLKGKLNGIALRVPTPNVSVVDLVINVEKKGLTAEDVNEAFRKAANGPMKGILDVCDAPLVSVDFRCSDVSTTIDSSLTMVMGDDMVKVVAWYDNEWGYSQRVVDLAHLVASKW 418          
The following BLAST results are available for this feature:
BLAST of CX671867 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 298
Match NameE-valueIdentityDescription
G3PA_SPIOL4.883e-5065.27Glyceraldehyde-3-phosphate dehydrogenase A, chloro... [more]
G3PA_ARATH2.423e-4964.67Glyceraldehyde-3-phosphate dehydrogenase A, chloro... [more]
G3PA_SINAL5.398e-4964.07Glyceraldehyde-3-phosphate dehydrogenase A, chloro... [more]
G3PA_PEA4.570e-4864.07Glyceraldehyde-3-phosphate dehydrogenase A, chloro... [more]
G3PA_TOBAC1.126e-4661.68Glyceraldehyde-3-phosphate dehydrogenase A, chloro... [more]
G3PA_MAIZE8.067e-4560.48Glyceraldehyde-3-phosphate dehydrogenase A, chloro... [more]
G3PB_TOBAC3.389e-4358.08Glyceraldehyde-3-phosphate dehydrogenase B, chloro... [more]
G3PB_PEA3.172e-4156.89Glyceraldehyde-3-phosphate dehydrogenase B, chloro... [more]
G3PA_CHLRE1.205e-4054.22Glyceraldehyde-3-phosphate dehydrogenase A, chloro... [more]
G3PB_ARATH1.020e-3955.09Glyceraldehyde-3-phosphate dehydrogenase B, chloro... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS10_13F03_g Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-13F03-K5-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX671867 ID=CX671867; Name=CX671867; organism=Citrus sinensis; type=EST; length=771bp
TTTTTTTTTTTCAACTTTAATGTAAGAATTTTATTGCATAATGATTAATG
ACAGGCAAAGGAAAAAGGTTCCATAATAAGATAGTGTTATACATTCTACA
AATTCTAAGACGCAGAACAATAAATGAGGGAACCAAAAATGAAAAACAAG
AACATCGTTGTGCCGATTACAGCCGAGTTCCGATTTTAGTATTTACTTCA
CTTCCAGTTGTTGGCAACAATGTCGGCCAAATCCACAACCCTTTGAGAGT
AACCCCATTCATTGTCATACCATGCAATCACCTTAACCATGTCGTCTCCC
ATGACAAGTGTGAGAGATGAATCAACGGTTGAGGATACATCAGAGCACCT
GAAGTCGACCGAAACGAGGGGCTCGTCGCACACGGAGAGGATCCCTTTCA
GTTCATTGTCAGCGCTTTCTCTGAAAGCGGCGTTCACCTCTTCTGCGAAG
GTTTTCTTCGACACCTGAACGACAAGATCAACAACCGAGACGTTTGGTGT
TGGCACACGAAGGGCAATGCCGTTTAGTTTGCCTTTGAGTGCTGGGAGGA
CAAGGGCCACAGCTTTTGCCGCACCAGTTGATGTTGGGACAATGTTGAGT
GCAGCTGCTCTTGCACGCCTGAGGTCACGGTGGCTAGCATCGAGTAGCCT
TTGGTCGCCAGTGTACGAGTGTGTGGTGGTCATGGTTCCCTTGATAATGC
CTGCGCACATGGGAAAAATTCTATCATTCAATTGGGTGACTTTTTGCGTT
TTACGAAGCTGAATTATATCG
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