CX671833

Overview
NameCX671833
Unique NameCX671833
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length845
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX671833_ssr323 microsatellite CX671833_ssr323:323..334. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig2424 contig Csv1_Contig2424:34..877. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX671833 vs. ExPASy Swiss-Prot
Match: BH130_ARATH (Transcription factor bHLH130 OS=Arabidopsis thaliana GN=BHLH130 PE=1 SV=1)

HSP 1 Score: 189.889 bits (481), Expect = 1.532e-47
Identity = 98/161 (60.87%), Postives = 118/161 (73.29%), Query Frame = -1
Query:  321 NFPSDPWDDAS-----FSGVKRARDSTCNMSFGLDAYETQNGNSGNQSTRLVHHLSLPK---TSAEMAAVEKFLHFQGSVPCKIRAKRGCATHPRSIAERVRRTRISERMRKLQDLFPNMDKQTNTAEMLDLAVEHIKDLQKQVKLLTDNKAKCMCPNKQK 779
            NFP   W+D S      S +KR  +    +  G      QNG SGN+   L HHLSLPK   T+++M +V+K+L  Q SVPCKIRAKRGCATHPRSIAERVRRTRISERMRKLQ+L PNMDKQTNT++MLDLAV++IKDLQ+Q K+L DN+A C C NK+K
Sbjct:  201 NFPYSHWNDPSSFIDNLSSLKREAEDDGKLFLG-----AQNGESGNRMQLLSHHLSLPKSSSTASDMVSVDKYLQLQDSVPCKIRAKRGCATHPRSIAERVRRTRISERMRKLQELVPNMDKQTNTSDMLDLAVDYIKDLQRQYKILNDNRANCKCMNKEK 356          
BLAST of CX671833 vs. ExPASy Swiss-Prot
Match: BH122_ARATH (Transcription factor bHLH122 OS=Arabidopsis thaliana GN=BHLH122 PE=1 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 3.782e-38
Identity = 79/123 (64.23%), Postives = 101/123 (82.11%), Query Frame = -1
Query:  336 SFGLDAYETQNGNSGNQSTRLVHHLSLPKTSAEMAAVEKFLHFQGSVPCKIRAKRGCATHPRSIAERVRRTRISERMRKLQDLFPNMDKQTNTAEMLDLAVEHIKDLQKQVKLLTDNKAKCMC 704
            S GLD Y+T++ +S ++   L HH+SLPK+ ++   +E+ L    S+PCKIRAKRGCATHPRSIAERVRRT+ISERMRKLQDL PNMD QTNTA+MLDLAV++IKDLQ+QVK L +++A+C C
Sbjct:  259 SGGLDQYKTKDEDSASRRPPLAHHMSLPKSLSD---IEQLL--SDSIPCKIRAKRGCATHPRSIAERVRRTKISERMRKLQDLVPNMDTQTNTADMLDLAVQYIKDLQEQVKALEESRARCRC 376          
BLAST of CX671833 vs. ExPASy Swiss-Prot
Match: BH080_ARATH (Transcription factor bHLH80 OS=Arabidopsis thaliana GN=BHLH80 PE=1 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 2.903e-30
Identity = 78/179 (43.58%), Postives = 106/179 (59.22%), Query Frame = -1
Query:  321 NSSPEKNFVGNNGASRQYMPNF--PSDPWD----DASFSGVKRARDSTCNMSFGLDAYETQNGNSGNQSTRLVHHLSLPKTSAEMAAVEKFLHFQGSVPCKIRAKRGCATHPRSIAERVRRTRISERMRKLQDLFPNMDKQTNTAEMLDLAVEHIKDLQKQVKLLTDNKAKCMCPNKQK 839
            NSSP     G+   +  Y  NF  P++ +D    +   S  KR+RD     S  L   +   G SG     +                +K   F+ SVPC++RAKRGCATHPRSIAERVRRTRIS+R+R+LQ+L PNMDKQTNTA+ML+ AVE++K LQ Q++ LT+ + +C C  K++
Sbjct:   99 NSSPADFLSGSGSGTDGYFSNFGIPAN-YDYLSTNVDISPTKRSRDMETQFSSQLKEEQMSGGISGMMDMNM----------------DKI--FEDSVPCRVRAKRGCATHPRSIAERVRRTRISDRIRRLQELVPNMDKQTNTADMLEEAVEYVKALQSQIQELTEQQKRCKCKPKEE 258          
BLAST of CX671833 vs. ExPASy Swiss-Prot
Match: BH128_ARATH (Transcription factor bHLH128 OS=Arabidopsis thaliana GN=BHLH128 PE=1 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 6.692e-27
Identity = 72/152 (47.37%), Postives = 93/152 (61.18%), Query Frame = -1
Query:  321 SDPWDDASFS-GVKRARDSTCNMSFGLDAYETQNGNSGNQSTRLVHHLSLPKTSAEMAAVEKFLHF-QGSVPCKIRAKRGCATHPRSIAERVRRTRISERMRKLQDLFPNMDKQTNTAEMLDLAVEHIKDLQKQVKLLTDNKAKCMCPNKQK 770
            +D WDD S S G    R S                 S +  + L    SLP  ++ M  ++ F+   + SVPCKIRAKRGCATHPRSIAER RRTRIS +++KLQDL PNMDKQT+ ++MLDLAV+HIK LQ Q++ L  ++  C C   +K
Sbjct:  225 TDSWDDGSGSIGFTVTRPSK---------------RSKDMDSGLFSQYSLPSDTS-MNYMDNFMQLPEDSVPCKIRAKRGCATHPRSIAERERRTRISGKLKKLQDLVPNMDKQTSYSDMLDLAVQHIKGLQHQLQNLKKDQENCTCGCSEK 360          
BLAST of CX671833 vs. ExPASy Swiss-Prot
Match: BH129_ARATH (Transcription factor bHLH129 OS=Arabidopsis thaliana GN=BHLH129 PE=2 SV=2)

HSP 1 Score: 119.013 bits (297), Expect = 3.321e-26
Identity = 65/120 (54.17%), Postives = 88/120 (73.33%), Query Frame = -1
Query:  366 DSTCNMSFGLDAYETQNGNSGNQSTRLVHHLSLPKTSAEMAAVEKFLHF-QGSVPCKIRAKRGCATHPRSIAERVRRTRISERMRKLQDLFPNMDKQTNTAEMLDLAVEHIKDLQKQVKL 722
            +S+ ++SF +D    ++ NS      L    S+P+T+ EMA +E  ++  + SVPC+ RAKRG ATHPRSIAER RRTRIS +++KLQ+L PNMDKQT+ A+MLDLAVEHIK LQ QV++
Sbjct:  178 NSSSHISFTIDQPGKRSKNS--DFFTLETQYSMPQTTLEMATMENLMNIPEDSVPCRARAKRGFATHPRSIAERERRTRISGKLKKLQELVPNMDKQTSYADMLDLAVEHIKGLQHQVEV 295          
BLAST of CX671833 vs. ExPASy Swiss-Prot
Match: BH081_ARATH (Transcription factor bHLH81 OS=Arabidopsis thaliana GN=BHLH81 PE=2 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 4.338e-26
Identity = 73/175 (41.71%), Postives = 106/175 (60.57%), Query Frame = -1
Query:  321 NSSPEKNFVGNNGASRQY--MPNFPSDPWDDASFSGVKRARDSTCNMSFGLDAYETQNGNSGNQSTRLVHHLSLPKTSAEMAAVEKFLHFQGSVPCKIRAKRGCATHPRSIAERVRRTRISERMRKLQDLFPNMDKQTNTAEMLDLAVEHIKDLQKQVKLLTDNKAKCMCPNKQK 839
            NS+P     G++G  + +    N+     +     G KR+R+     S    + E  +   G QS+  V     P   + M+ +      + SV  ++RAKRGCATHPRSIAERVRRTRIS+R+RKLQ+L PNMDKQTNTA+ML+ AVE++K LQ+Q++ LT+ + +C C  K++
Sbjct:   96 NSTPADFLSGSDGFIQSFGIQANYDYLSGNIDVSPGSKRSREMEALFS----SPEFTSQMKGEQSSGQV-----PTGVSSMSDMNMENLMEDSVAFRVRAKRGCATHPRSIAERVRRTRISDRIRKLQELVPNMDKQTNTADMLEEAVEYVKVLQRQIQELTEEQKRCTCIPKEE 261          
BLAST of CX671833 vs. ExPASy Swiss-Prot
Match: BH069_ARATH (Transcription factor bHLH69 OS=Arabidopsis thaliana GN=BHLH69 PE=2 SV=2)

HSP 1 Score: 73.1738 bits (178), Expect = 2.090e-12
Identity = 38/66 (57.58%), Postives = 52/66 (78.79%), Query Frame = -1
Query:  360 KIRAKRGCATHPRSIAERVRRTRISERMRKLQDLFPNMDKQTNTAEMLDLAVEHIKDLQKQVKLLT 557
            K+RA+RG AT P SIAER+RR RI+ERM+ LQ+L PN +K T+ A MLD  ++++K LQ QVK+L+
Sbjct:  129 KVRARRGQATDPHSIAERLRRERIAERMKSLQELVPNGNK-TDKASMLDEIIDYVKFLQLQVKVLS 193          
BLAST of CX671833 vs. ExPASy Swiss-Prot
Match: BH066_ARATH (Transcription factor bHLH66 OS=Arabidopsis thaliana GN=BHLH66 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 2.090e-12
Identity = 39/66 (59.09%), Postives = 52/66 (78.79%), Query Frame = -1
Query:  360 KIRAKRGCATHPRSIAERVRRTRISERMRKLQDLFPNMDKQTNTAEMLDLAVEHIKDLQKQVKLLT 557
            KIRA+RG AT P SIAER+RR RI+ERM+ LQ+L PN +K T+ A MLD  ++++K LQ QVK+L+
Sbjct:  137 KIRARRGQATDPHSIAERLRRERIAERMKALQELVPNGNK-TDKASMLDEIIDYVKFLQLQVKVLS 201          
BLAST of CX671833 vs. ExPASy Swiss-Prot
Match: BH082_ARATH (Transcription factor bHLH82 OS=Arabidopsis thaliana GN=BHLH82 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.730e-12
Identity = 37/66 (56.06%), Postives = 52/66 (78.79%), Query Frame = -1
Query:  360 KIRAKRGCATHPRSIAERVRRTRISERMRKLQDLFPNMDKQTNTAEMLDLAVEHIKDLQKQVKLLT 557
            ++RA+RG AT P SIAER+RR RI+ERM+ LQ+L PN +K T+ A MLD  +E+++ LQ QVK+L+
Sbjct:   98 RVRARRGQATDPHSIAERLRRERIAERMKSLQELVPNTNK-TDKASMLDEIIEYVRFLQLQVKVLS 162          
BLAST of CX671833 vs. ExPASy Swiss-Prot
Match: BH074_ARATH (Transcription factor bHLH74 OS=Arabidopsis thaliana GN=BHLH74 PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 4.656e-12
Identity = 43/108 (39.81%), Postives = 66/108 (61.11%), Query Frame = -1
Query:  360 ETQNGNSGNQSTRLVHHLSLPKTSAEMAAVEKFLHFQGSVPCKIRAKRGCATHPRSIAERVRRTRISERMRKLQDLFPNMDKQTNTAEMLDLAVEHIKDLQKQVKLLT 683
            ++Q  +  +QS   V+  S   + +E A  E ++H        +RA+RG AT+  S+AERVRR +ISERMR LQ+L P  +K T  A MLD  + +++ LQ+QV+ L+
Sbjct:  174 QSQKKHKNDQSKETVNKES---SQSEEAPKENYIH--------MRARRGQATNSHSLAERVRREKISERMRLLQELVPGCNKITGKAVMLDEIINYVQSLQQQVEFLS 270          
The following BLAST results are available for this feature:
BLAST of CX671833 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 17
Match NameE-valueIdentityDescription
BH130_ARATH1.532e-4760.87Transcription factor bHLH130 OS=Arabidopsis thalia... [more]
BH122_ARATH3.782e-3864.23Transcription factor bHLH122 OS=Arabidopsis thalia... [more]
BH080_ARATH2.903e-3043.58Transcription factor bHLH80 OS=Arabidopsis thalian... [more]
BH128_ARATH6.692e-2747.37Transcription factor bHLH128 OS=Arabidopsis thalia... [more]
BH129_ARATH3.321e-2654.17Transcription factor bHLH129 OS=Arabidopsis thalia... [more]
BH081_ARATH4.338e-2641.71Transcription factor bHLH81 OS=Arabidopsis thalian... [more]
BH069_ARATH2.090e-1257.58Transcription factor bHLH69 OS=Arabidopsis thalian... [more]
BH066_ARATH2.090e-1259.09Transcription factor bHLH66 OS=Arabidopsis thalian... [more]
BH082_ARATH2.730e-1256.06Transcription factor bHLH82 OS=Arabidopsis thalian... [more]
BH074_ARATH4.656e-1239.81Transcription factor bHLH74 OS=Arabidopsis thalian... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS10_13D08_b Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-13D08-G15-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX671833 ID=CX671833; Name=CX671833; organism=Citrus sinensis; type=EST; length=845bp
TTTTTTTTTTTTTTTTTCAAACTTTCGGCCAACAGCTAAAAGATTGTACT
TTGTATTGAAGAAATCATGGATGAAGAAGCTTAATACAATTAATCTACGT
GAAGAGAATCAAAGCAAGACAATCACTCTACTCAACTGGATCTTACAATA
AATTACAACAGCAATCTTTTCAACCCGCTAAATCTCACTCGCTATCCTAT
TATTTTTTTAAGGGCAGTGGAAATGAGGAGTCATCTTTCTTTTTCATCTC
ACAAGTAGCAGCTTCCTTAAGCTATCTGTACAGATACAAGTCTACCGGAA
GTTTTTGTAATTCAACATAGCTTTTGTTTGTTTGGGCACATGCATTTTGC
CTTATTGTCCGTGAGTAACTTGACTTGTTTCTGAAGATCTTTAATGTGTT
CAACTGCCAGATCTAACATTTCAGCTGTGTTTGTTTGCTTGTCCATGTTT
GGGAAAAGGTCTTGCAATTTCCTCATTCGTTCACTTATCCGAGTTCTTCT
AACCCTCTCGGCAATGCTTCTTGGATGAGTGGCACAACCTCTCTTGGCTC
GAATCTTGCAAGGAACAGAACCTTGAAAATGCAAAAACTTCTCCACAGCA
GCCATTTCAGCAGATGTTTTTGGTAAGCTCAAATGGTGGACCAAGCGAGT
AGATTGGTTTCCAGAATTTCCATTCTGAGTTTCATATGCGTCTAGACCAA
AAGACATGTTGCAAGTACTGTCTCTAGCCCTCTTAACACCACTGAATGAA
GCATCATCCCAAGGATCGCTTGGAAAATTGGGCATGTATTGTCTACTGGC
ACCATTATTGCCCACAAAGTTTTTCTCTGGGCTACTATTCCCCAT
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