CX671829

Overview
NameCX671829
Unique NameCX671829
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length777
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX671829_ssr459 microsatellite CX671829_ssr459:459..482. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CX671829 vs. ExPASy Swiss-Prot
Match: WRKY7_ARATH (Probable WRKY transcription factor 7 OS=Arabidopsis thaliana GN=WRKY7 PE=1 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 2.290e-23
Identity = 92/237 (38.82%), Postives = 114/237 (48.10%), Query Frame = 3
Query:  129 MAVELMM-----GYGCGDSF---AAAVKMEENAVQEAASEGMQSIGEFIKLLSRSGQVPXXXXXXXXXXXXXXPTNLEPDKEIKVAAEVAVNNFKKVISLLGRPRTGHARFRRAPVGSXXXXXXXXQKEEKVHLQEPAGPSVQSTNHLSKEQV----SAFKVYCXXXXXXXXXXXXXXQKSNPNSTVVTKS--------DHVPSSINFS----ASATNSFISSLTGTAGDTDSIQPS 767
            M VELMM     G G GD F   AAA KME+ A++EAAS G+  + EF+KL+ +S Q                PT  +   EI    +VAVN+FKKVISLLGR RTGHARFRRAP  +          EE+V ++E    +         EQ     SAF+VYC                +N N T    S        +  PS+INF+     SATNSF+SS      DTDS   S
Sbjct:    1 MTVELMMSSYSGGGGGGDGFPAIAAAAKMEDTALREAASAGIHGVEEFLKLIGQSQQ----------------PTE-KSQTEITAVTDVAVNSFKKVISLLGRSRTGHARFRRAPASTQTPFKQTPVVEEEVEVEEKKPETSSVLTKQKTEQYHGGGSAFRVYC-PTPIHRRPPLSHNNNNNQNQTKNGSSSSSPPMLANGAPSTINFAPSPPVSATNSFMSS---HRCDTDSTHMS 216          
BLAST of CX671829 vs. ExPASy Swiss-Prot
Match: WRK15_ARATH (Probable WRKY transcription factor 15 OS=Arabidopsis thaliana GN=WRKY15 PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 4.480e-11
Identity = 46/108 (42.59%), Postives = 59/108 (54.63%), Query Frame = 3
Query:  129 MAVELMMGYGCGDSFAAAVKMEENAVQEAASEGMQSIGEFIKLLSRSGQVPXXXXXXXXXXXXXXPTNLEPDKEIKVAAEVAVNNFKKVISLLGRPRTGHARFRRAPV 452
            MAVELM       ++ + V  +  AVQEAA+ G++SI  FI L+SR                     +LE  +     A+ AV+ FK+VISLL R RTGHARFRRAPV
Sbjct:    1 MAVELMTR-----NYISGVGADSFAVQEAAASGLKSIENFIGLMSRDSFNSDQPSSSSASASASAAADLESARN--TTADAAVSKFKRVISLLDRTRTGHARFRRAPV 101          
The following BLAST results are available for this feature:
BLAST of CX671829 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
WRKY7_ARATH2.290e-2338.82Probable WRKY transcription factor 7 OS=Arabidopsi... [more]
WRK15_ARATH4.480e-1142.59Probable WRKY transcription factor 15 OS=Arabidops... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS10_13D06_b Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-13D06-G11-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX671829 ID=CX671829; Name=CX671829; organism=Citrus sinensis; type=EST; length=777bp
GTTTCTTTGCTTTTTCCTTTTTCTTTGCTTTCTTTCATCGTCATTTTAAC
AATTTTTCCTTGCCTTGGACAACAAGATTTAAATAGCCTTTGGGCTTTGG
CTCTTATTAGCGCTCGGTTTTAAAAGAAATGGCCGTGGAGCTGATGATGG
GTTACGGTTGCGGTGATAGTTTTGCAGCAGCTGTGAAGATGGAAGAGAAC
GCTGTACAAGAAGCTGCATCCGAAGGTATGCAGAGCATTGGTGAGTTCAT
AAAATTATTGTCTCGAAGTGGTCAAGTACCATCTGAACAACAAACACAGT
ACCAAGAATCTACATCTTCCTCTCCAACAAATCTCGAACCTGACAAGGAA
ATCAAGGTCGCAGCTGAAGTGGCCGTGAACAATTTCAAGAAAGTTATTTC
TCTACTTGGTAGACCAAGAACAGGGCATGCAAGATTCAGAAGAGCTCCTG
TTGGTAGCCCTCCTCCTCCTCCTCCTCCTCCTCAAAAAGAAGAAAAAGTA
CATCTTCAAGAACCAGCAGGGCCATCAGTTCAATCTACAAATCATCTTTC
AAAGGAACAAGTTTCTGCCTTCAAGGTTTATTGCCCTACCCCTGTTCATC
GTCTGCCTCCGTTGCCTCACCATGTTCAGAAGAGTAATCCTAATTCTACG
GTGGTGACTAAGTCCGATCATGTGCCAAGCAGTATCAATTTCTCAGCCTC
TGCCACAAATTCTTTCATATCCTCGCTCACAGGCACAGCAGGGGATACCG
ACAGCATACAACCTTCTTTCTCATCTG
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