CX671824
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX671824 vs. ExPASy Swiss-Prot
Match: ERC6L_BOVIN (DNA excision repair protein ERCC-6-like OS=Bos taurus GN=ERCC6L PE=2 SV=1) HSP 1 Score: 129.798 bits (325), Expect = 1.798e-29 Identity = 66/124 (53.23%), Postives = 88/124 (70.97%), Query Frame = 3 Query: 21 NSITDNQSVDRAYRIGQKKDVVVYRLMTCGTVEEKIYRKQIFKGGLFKTAT-EHKEQIRYFSQQDLRELLSLPKQGFDVSLTQQQLHEEHGDQHNMDESLEAHIQFLDTLGIAGVSHHSLLFSK 389 N TD Q+VDR YRIGQK++VVVYRL+TCGTVEEKIYR+Q+FK L + T + K RYFS+Q+LREL ++ + F S TQ QL H Q D++L+ HI FL +L IAG+S H L++++ Sbjct: 561 NPATDAQAVDRVYRIGQKENVVVYRLITCGTVEEKIYRRQVFKDSLIRQTTGDKKNPFRYFSKQELRELFTI--EDFQNSATQLQLQSLHAAQRRSDKNLDEHIAFLHSLRIAGISDHDLMYTR 682
BLAST of CX671824 vs. ExPASy Swiss-Prot
Match: ERC6L_HUMAN (DNA excision repair protein ERCC-6-like OS=Homo sapiens GN=ERCC6L PE=1 SV=1) HSP 1 Score: 129.028 bits (323), Expect = 3.067e-29 Identity = 66/123 (53.66%), Postives = 86/123 (69.92%), Query Frame = 3 Query: 21 NSITDNQSVDRAYRIGQKKDVVVYRLMTCGTVEEKIYRKQIFKGGLFKTAT-EHKEQIRYFSQQDLRELLSLPKQGFDVSLTQQQLHEEHGDQHNMDESLEAHIQFLDTLGIAGVSHHSLLFS 386 N TD Q+VDR YRIGQK++VVVYRL+TCGTVEEKIYR+Q+FK L + T E K RYFS+Q+LREL ++ + S+TQ QL H Q D L+ HI +L +LGIAG+S H L+++ Sbjct: 559 NPATDAQAVDRVYRIGQKENVVVYRLITCGTVEEKIYRRQVFKDSLIRQTTGEKKNPFRYFSKQELRELFTI--EDLQNSVTQLQLQSLHAAQRKSDIKLDEHIAYLQSLGIAGISDHDLMYT 679
BLAST of CX671824 vs. ExPASy Swiss-Prot
Match: ERC6L_MOUSE (DNA excision repair protein ERCC-6-like OS=Mus musculus GN=Ercc6l PE=1 SV=1) HSP 1 Score: 127.487 bits (319), Expect = 8.923e-29 Identity = 66/124 (53.23%), Postives = 85/124 (68.55%), Query Frame = 3 Query: 21 NSITDNQSVDRAYRIGQKKDVVVYRLMTCGTVEEKIYRKQIFKGGLFKTAT-EHKEQIRYFSQQDLRELLSLPKQGFDVSLTQQQLHEEHGDQHNMDESLEAHIQFLDTLGIAGVSHHSLLFSK 389 N TD Q+VDR YRIGQK++VVVYRL+TCGTVEEKIYR+Q+FK L + T E K RYF++Q+L+EL ++ S TQ QL H Q DE L+ HI +L LGIAG+S H L+F++ Sbjct: 562 NPATDAQAVDRVYRIGQKENVVVYRLITCGTVEEKIYRRQVFKDSLIRQTTGEKKNPFRYFTKQELKELFTV--GDLQKSATQMQLQCLHAAQRRSDEKLDEHIAYLHLLGIAGISDHDLMFTR 683
BLAST of CX671824 vs. ExPASy Swiss-Prot
Match: ERC6L_DANRE (DNA excision repair protein ERCC-6-like OS=Danio rerio GN=ercc6l PE=1 SV=1) HSP 1 Score: 120.939 bits (302), Expect = 8.352e-27 Identity = 63/124 (50.81%), Postives = 83/124 (66.94%), Query Frame = 3 Query: 21 NSITDNQSVDRAYRIGQKKDVVVYRLMTCGTVEEKIYRKQIFKGGLFKTAT-EHKEQIRYFSQQDLRELLSLPKQGFDVSLTQQQLHEEHGDQHNMDESLEAHIQFLDTLGIAGVSHHSLLFSK 389 N TD Q+VDRAYRIGQ ++V++YRL+TCGTVEEKIYR+Q+FK L + T + K RYFS+Q+LREL L + S TQQQL H D SL+ HI L ++ + G+S H L+F+K Sbjct: 574 NPATDAQAVDRAYRIGQTENVIIYRLITCGTVEEKIYRRQVFKDSLIRQTTGDKKNPFRYFSKQELRELFKL--EDTRSSSTQQQLQAMHAQSRRSDTSLDHHIARLHSMEMFGISDHDLMFTK 695
BLAST of CX671824 vs. ExPASy Swiss-Prot
Match: RHP26_SCHPO (DNA repair protein rhp26 OS=Schizosaccharomyces pombe GN=rhp26 PE=2 SV=1) HSP 1 Score: 78.5666 bits (192), Expect = 4.753e-14 Identity = 39/71 (54.93%), Postives = 50/71 (70.42%), Query Frame = 3 Query: 21 NSITDNQSVDRAYRIGQKKDVVVYRLMTCGTVEEKIYRKQIFKGGLFKTATEHKEQIRYFSQQDLRELLSL 233 N TD Q+ +RA+R+GQKKDVVVYRLMT GT+EEKIY +QIFK L + +Q R+F DL +L +L Sbjct: 724 NPSTDAQARERAWRLGQKKDVVVYRLMTAGTIEEKIYHRQIFKQFLTNKILKDPKQRRFFKMTDLHDLFTL 794
BLAST of CX671824 vs. ExPASy Swiss-Prot
Match: ERCC6_HUMAN (DNA excision repair protein ERCC-6 OS=Homo sapiens GN=ERCC6 PE=1 SV=1) HSP 1 Score: 76.2554 bits (186), Expect = 2.359e-13 Identity = 38/71 (53.52%), Postives = 48/71 (67.61%), Query Frame = 3 Query: 21 NSITDNQSVDRAYRIGQKKDVVVYRLMTCGTVEEKIYRKQIFKGGLFKTATEHKEQIRYFSQQDLRELLSL 233 N TD Q+ +RA+RIGQKK V VYRL+T GT+EEKIY +QIFK L + +Q R+F DL EL +L Sbjct: 937 NPSTDTQARERAWRIGQKKQVTVYRLLTAGTIEEKIYHRQIFKQFLTNRVLKDPKQRRFFKSNDLYELFTL 1007
BLAST of CX671824 vs. ExPASy Swiss-Prot
Match: RAD26_YEAST (DNA repair and recombination protein RAD26 OS=Saccharomyces cerevisiae GN=RAD26 PE=1 SV=1) HSP 1 Score: 71.2478 bits (173), Expect = 7.589e-12 Identity = 45/118 (38.14%), Postives = 69/118 (58.47%), Query Frame = 3 Query: 21 NSITDNQSVDRAYRIGQKKDVVVYRLMTCGTVEEKIYRKQIFKGGLFKTATEHKEQIRYFSQQDLRELLSLPKQGFDVSLTQQQLHEE---HGDQHNMDESLEAHIQFLDTLGIAGVS 365 N TD Q+ +RA+RIGQK++V +YRLM G++EEKIY +QIFK L +Q R+F +L +L SL G + + ++L+EE H + +S E+ F + ++GVS Sbjct: 753 NPSTDMQARERAWRIGQKREVSIYRLMVGGSIEEKIYHRQIFKQFLTNRILTDPKQKRFFKIHELHDLFSL---GGENGYSTEELNEEVQKHTENLKNSKSEESD-DFEQLVNLSGVS 866 The following BLAST results are available for this feature:
BLAST of CX671824 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 7
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >CX671824 ID=CX671824; Name=CX671824; organism=Citrus sinensis; type=EST; length=819bpback to top |