CX671824

Overview
NameCX671824
Unique NameCX671824
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length819
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX671824 vs. ExPASy Swiss-Prot
Match: ERC6L_BOVIN (DNA excision repair protein ERCC-6-like OS=Bos taurus GN=ERCC6L PE=2 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 1.798e-29
Identity = 66/124 (53.23%), Postives = 88/124 (70.97%), Query Frame = 3
Query:   21 NSITDNQSVDRAYRIGQKKDVVVYRLMTCGTVEEKIYRKQIFKGGLFKTAT-EHKEQIRYFSQQDLRELLSLPKQGFDVSLTQQQLHEEHGDQHNMDESLEAHIQFLDTLGIAGVSHHSLLFSK 389
            N  TD Q+VDR YRIGQK++VVVYRL+TCGTVEEKIYR+Q+FK  L +  T + K   RYFS+Q+LREL ++  + F  S TQ QL   H  Q   D++L+ HI FL +L IAG+S H L++++
Sbjct:  561 NPATDAQAVDRVYRIGQKENVVVYRLITCGTVEEKIYRRQVFKDSLIRQTTGDKKNPFRYFSKQELRELFTI--EDFQNSATQLQLQSLHAAQRRSDKNLDEHIAFLHSLRIAGISDHDLMYTR 682          
BLAST of CX671824 vs. ExPASy Swiss-Prot
Match: ERC6L_HUMAN (DNA excision repair protein ERCC-6-like OS=Homo sapiens GN=ERCC6L PE=1 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 3.067e-29
Identity = 66/123 (53.66%), Postives = 86/123 (69.92%), Query Frame = 3
Query:   21 NSITDNQSVDRAYRIGQKKDVVVYRLMTCGTVEEKIYRKQIFKGGLFKTAT-EHKEQIRYFSQQDLRELLSLPKQGFDVSLTQQQLHEEHGDQHNMDESLEAHIQFLDTLGIAGVSHHSLLFS 386
            N  TD Q+VDR YRIGQK++VVVYRL+TCGTVEEKIYR+Q+FK  L +  T E K   RYFS+Q+LREL ++  +    S+TQ QL   H  Q   D  L+ HI +L +LGIAG+S H L+++
Sbjct:  559 NPATDAQAVDRVYRIGQKENVVVYRLITCGTVEEKIYRRQVFKDSLIRQTTGEKKNPFRYFSKQELRELFTI--EDLQNSVTQLQLQSLHAAQRKSDIKLDEHIAYLQSLGIAGISDHDLMYT 679          
BLAST of CX671824 vs. ExPASy Swiss-Prot
Match: ERC6L_MOUSE (DNA excision repair protein ERCC-6-like OS=Mus musculus GN=Ercc6l PE=1 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 8.923e-29
Identity = 66/124 (53.23%), Postives = 85/124 (68.55%), Query Frame = 3
Query:   21 NSITDNQSVDRAYRIGQKKDVVVYRLMTCGTVEEKIYRKQIFKGGLFKTAT-EHKEQIRYFSQQDLRELLSLPKQGFDVSLTQQQLHEEHGDQHNMDESLEAHIQFLDTLGIAGVSHHSLLFSK 389
            N  TD Q+VDR YRIGQK++VVVYRL+TCGTVEEKIYR+Q+FK  L +  T E K   RYF++Q+L+EL ++       S TQ QL   H  Q   DE L+ HI +L  LGIAG+S H L+F++
Sbjct:  562 NPATDAQAVDRVYRIGQKENVVVYRLITCGTVEEKIYRRQVFKDSLIRQTTGEKKNPFRYFTKQELKELFTV--GDLQKSATQMQLQCLHAAQRRSDEKLDEHIAYLHLLGIAGISDHDLMFTR 683          
BLAST of CX671824 vs. ExPASy Swiss-Prot
Match: ERC6L_DANRE (DNA excision repair protein ERCC-6-like OS=Danio rerio GN=ercc6l PE=1 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 8.352e-27
Identity = 63/124 (50.81%), Postives = 83/124 (66.94%), Query Frame = 3
Query:   21 NSITDNQSVDRAYRIGQKKDVVVYRLMTCGTVEEKIYRKQIFKGGLFKTAT-EHKEQIRYFSQQDLRELLSLPKQGFDVSLTQQQLHEEHGDQHNMDESLEAHIQFLDTLGIAGVSHHSLLFSK 389
            N  TD Q+VDRAYRIGQ ++V++YRL+TCGTVEEKIYR+Q+FK  L +  T + K   RYFS+Q+LREL  L  +    S TQQQL   H      D SL+ HI  L ++ + G+S H L+F+K
Sbjct:  574 NPATDAQAVDRAYRIGQTENVIIYRLITCGTVEEKIYRRQVFKDSLIRQTTGDKKNPFRYFSKQELRELFKL--EDTRSSSTQQQLQAMHAQSRRSDTSLDHHIARLHSMEMFGISDHDLMFTK 695          
BLAST of CX671824 vs. ExPASy Swiss-Prot
Match: RHP26_SCHPO (DNA repair protein rhp26 OS=Schizosaccharomyces pombe GN=rhp26 PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 4.753e-14
Identity = 39/71 (54.93%), Postives = 50/71 (70.42%), Query Frame = 3
Query:   21 NSITDNQSVDRAYRIGQKKDVVVYRLMTCGTVEEKIYRKQIFKGGLFKTATEHKEQIRYFSQQDLRELLSL 233
            N  TD Q+ +RA+R+GQKKDVVVYRLMT GT+EEKIY +QIFK  L     +  +Q R+F   DL +L +L
Sbjct:  724 NPSTDAQARERAWRLGQKKDVVVYRLMTAGTIEEKIYHRQIFKQFLTNKILKDPKQRRFFKMTDLHDLFTL 794          
BLAST of CX671824 vs. ExPASy Swiss-Prot
Match: ERCC6_HUMAN (DNA excision repair protein ERCC-6 OS=Homo sapiens GN=ERCC6 PE=1 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.359e-13
Identity = 38/71 (53.52%), Postives = 48/71 (67.61%), Query Frame = 3
Query:   21 NSITDNQSVDRAYRIGQKKDVVVYRLMTCGTVEEKIYRKQIFKGGLFKTATEHKEQIRYFSQQDLRELLSL 233
            N  TD Q+ +RA+RIGQKK V VYRL+T GT+EEKIY +QIFK  L     +  +Q R+F   DL EL +L
Sbjct:  937 NPSTDTQARERAWRIGQKKQVTVYRLLTAGTIEEKIYHRQIFKQFLTNRVLKDPKQRRFFKSNDLYELFTL 1007          
BLAST of CX671824 vs. ExPASy Swiss-Prot
Match: RAD26_YEAST (DNA repair and recombination protein RAD26 OS=Saccharomyces cerevisiae GN=RAD26 PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 7.589e-12
Identity = 45/118 (38.14%), Postives = 69/118 (58.47%), Query Frame = 3
Query:   21 NSITDNQSVDRAYRIGQKKDVVVYRLMTCGTVEEKIYRKQIFKGGLFKTATEHKEQIRYFSQQDLRELLSLPKQGFDVSLTQQQLHEE---HGDQHNMDESLEAHIQFLDTLGIAGVS 365
            N  TD Q+ +RA+RIGQK++V +YRLM  G++EEKIY +QIFK  L        +Q R+F   +L +L SL   G +   + ++L+EE   H +     +S E+   F   + ++GVS
Sbjct:  753 NPSTDMQARERAWRIGQKREVSIYRLMVGGSIEEKIYHRQIFKQFLTNRILTDPKQKRFFKIHELHDLFSL---GGENGYSTEELNEEVQKHTENLKNSKSEESD-DFEQLVNLSGVS 866          
The following BLAST results are available for this feature:
BLAST of CX671824 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
ERC6L_BOVIN1.798e-2953.23DNA excision repair protein ERCC-6-like OS=Bos tau... [more]
ERC6L_HUMAN3.067e-2953.66DNA excision repair protein ERCC-6-like OS=Homo sa... [more]
ERC6L_MOUSE8.923e-2953.23DNA excision repair protein ERCC-6-like OS=Mus mus... [more]
ERC6L_DANRE8.352e-2750.81DNA excision repair protein ERCC-6-like OS=Danio r... [more]
RHP26_SCHPO4.753e-1454.93DNA repair protein rhp26 OS=Schizosaccharomyces po... [more]
ERCC6_HUMAN2.359e-1353.52DNA excision repair protein ERCC-6 OS=Homo sapiens... [more]
RAD26_YEAST7.589e-1238.14DNA repair and recombination protein RAD26 OS=Sacc... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS10_13D03_g Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-13D03-G5-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX671824 ID=CX671824; Name=CX671824; organism=Citrus sinensis; type=EST; length=819bp
TGAATGTGTATGGCCATAAGAATTCCATTACTGATAATCAGAGCGTTGAT
CGTGCTTATCGAATTGGACAAAAAAAGGATGTCGTTGTGTACAGATTAAT
GACATGTGGAACAGTTGAAGAAAAGATTTATAGAAAGCAGATATTCAAAG
GCGGATTGTTTAAGACAGCCACTGAGCACAAAGAACAGATTCGGTATTTT
AGCCAGCAGGATCTTCGGGAACTTCTCAGTCTACCCAAACAGGGGTTTGA
TGTTTCTCTCACCCAGCAGCAATTACATGAAGAGCATGGGGACCAGCACA
ACATGGATGAGTCCTTGGAAGCCCACATACAGTTCCTTGACACACTAGGT
ATAGCAGGAGTCAGTCATCACAGTTTACTCTTCTCCAAGACAGCACGAGT
GCAAGTAGTGCAGGAAGAAGAGGAAGCGACAAGGAGAAAAGGAACTGCAT
TTGTTGGTAATTCGTCATCTAGCTACTTGGTTGCACGAAACGTCGATGGG
GCTGAGTATGCGTTCAATCCTAGAGACATAAAACTGAACAAAAAATCTTC
TTCCCCAAAAAATGAAGCTAAATTAAAAGAGTCTGATATCAAGGAAAGAA
TTAAAAGGCTGTCACAACTTATATCAAACAAGGCTTGGCTTGTGGGCTTA
TAAGTATTTGGGCTTCCTTTCCTTGGAAGCTGATTTTTGAAGAGGAGTTT
TACCAATGTGTGCGTGACAGTTGGTATCAGTGCAAGTTCTTTCCCTAGGA
TGTGGCTTTATAAGCACTTGGGGTTCATGGAATTGTCAGCCAAAACCAAC
ATTATCCTTTTATCTTCTC
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