CX671821

Overview
NameCX671821
Unique NameCX671821
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length821
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10342 contig Csv1_Contig10342:22..842. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX671821 vs. ExPASy Swiss-Prot
Match: RK21_ARATH (50S ribosomal protein L21, chloroplastic OS=Arabidopsis thaliana GN=RPL21 PE=2 SV=1)

HSP 1 Score: 171.014 bits (432), Expect = 7.082e-42
Identity = 85/123 (69.11%), Postives = 96/123 (78.05%), Query Frame = -1
Query:  144 VESAAKEEPKREEIFAVVMIGSRQYIVFPGRFIYTQRLKGANVNDKIILNKVLLVGTKTTTYIGKPVVTNAAVHAVVEEQGLNPXXXXXXXXXXXXXXXXIGHRQPNTRIRITGITGYQDYPA 512
            V    +E+ KREEIFAV+M+G RQYIVFPGR++YTQRLK ANV+D+I+LNKVLLVGTKT TYIGKPVVTNA VHAVVE QGLN                 IGHRQPNTRIRITGITGY++YPA
Sbjct:   87 VSEVTEEKAKREEIFAVIMVGGRQYIVFPGRYLYTQRLKDANVDDQIVLNKVLLVGTKTHTYIGKPVVTNATVHAVVESQGLNDKVVVFKYKPKKKYRRNIGHRQPNTRIRITGITGYEEYPA 209          
BLAST of CX671821 vs. ExPASy Swiss-Prot
Match: RK21_SPIOL (50S ribosomal protein L21, chloroplastic OS=Spinacia oleracea GN=RPL21 PE=1 SV=1)

HSP 1 Score: 164.851 bits (416), Expect = 5.075e-40
Identity = 85/120 (70.83%), Postives = 95/120 (79.17%), Query Frame = -1
Query:  129 PKREEIFAVVMIGSRQYIVFPGRFIYTQRLKGANVNDKIILNKVLLVGTKTTTYIGKPVVTNAAVHAVVEEQGLNPXXXXXXXXXXXXXXXXIGHRQPNTRIRITGITGYQDYPAVTLDS 488
            P REEIFAVV+IGSRQYIV PGR+IYTQRLKGA VNDKI+LNKVLLVGTK +TYIG P+VTNAAVHAVVEEQ L+                 IGHRQP TRI+ITGITGY+DYPA TL++
Sbjct:  118 PPREEIFAVVVIGSRQYIVIPGRWIYTQRLKGATVNDKIVLNKVLLVGTKASTYIGTPIVTNAAVHAVVEEQLLDDKVIVFKYKKKKNYRRNIGHRQPITRIKITGITGYEDYPASTLEA 237          
BLAST of CX671821 vs. ExPASy Swiss-Prot
Match: RM21_ARATH (50S ribosomal protein L21, mitochondrial OS=Arabidopsis thaliana GN=RPL21M PE=2 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 3.539e-17
Identity = 46/108 (42.59%), Postives = 66/108 (61.11%), Query Frame = -1
Query:  156 EEIFAVVMIGSRQYIVFPGRFIYTQRLKGANVNDKIILNKVLLVGTKTTTYIGKPVVTNAAVHAVVEEQGLNPXXXXXXXXXXXXXXXXIGHRQPNTRIRITGITGYQ 479
            E +FA+V IGS Q+ V  G  I+T++LK  ++NDK+ L KVLL+G+ + T IG+P++ +A VHAVVEE  L+                  GHRQ  T++RIT I G +
Sbjct:  138 EPVFAIVQIGSHQFKVSNGDSIFTEKLKFCDINDKLELTKVLLLGSASQTIIGRPILPDATVHAVVEEHALDEKVLIFKKKRRKNYRRTRGHRQELTKLRITDIQGIE 245          
BLAST of CX671821 vs. ExPASy Swiss-Prot
Match: RM21_DICDI (Probable 39S ribosomal protein L21, mitochondrial OS=Dictyostelium discoideum GN=mrpl21 PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.303e-11
Identity = 44/117 (37.61%), Postives = 60/117 (51.28%), Query Frame = -1
Query:  138 PKREEIFAVVMIGSRQYIVFPGRFIYTQRLKGANVNDKIILNKVLLVGTKTTTYIGKPVVTNAAVHAVVEEQGLNPXXXXXXXXXXXXXXXXIGHRQPNTRIRITGITGYQDYPAVT 488
            P  ++ FAVV I  +QY V  G  I T +++  +V + I+L+KVLLVGTK  T IGKP+++N  VHA +EEQ                     G +   T IRI GI   Q+    T
Sbjct:   56 PIGKDSFAVVHISGKQYKVIEGDIIMTDKIQ-VDVGEHIVLDKVLLVGTKNETIIGKPIISNFKVHAYIEEQAKTEHVTIFKHKPRKNYKRTTGFQGLATYIRIGGIIKGQETTTTT 171          
The following BLAST results are available for this feature:
BLAST of CX671821 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
RK21_ARATH7.082e-4269.1150S ribosomal protein L21, chloroplastic OS=Arabid... [more]
RK21_SPIOL5.075e-4070.8350S ribosomal protein L21, chloroplastic OS=Spinac... [more]
RM21_ARATH3.539e-1742.5950S ribosomal protein L21, mitochondrial OS=Arabid... [more]
RM21_DICDI1.303e-1137.61Probable 39S ribosomal protein L21, mitochondrial ... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS10_13D02_b Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-13D02-G3-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX671821 ID=CX671821; Name=CX671821; organism=Citrus sinensis; type=EST; length=821bp
GTCAATGTGACAAAAATTGATTCCCATAAGTGCATAACTCAATCCGAACA
TGTAACTAGGGAAGGTAAATCACATACATGAAAAGCAGAAAAAGACTTTA
GTGCTAGAACCTATTGAACAGATTTTAGTGAATCAAGTGTGACTGCCGGA
TAGTCTTGATAGCCAGTGATGCCAGTTATCCTTATCCGCGTATTTGGCTG
TCGGTGGCCGATATTCCTCCGATAGTTCTTTTTCTTCTTATACTTGAAGA
CAATTACTTTGGGGTTTAAACCTTGCTCCTCGACAACTGCATGTACGGCA
GCATTAGTGACCACAGGTTTTCCGATATAGGTAGTTGTTTTTGTGCCTAC
AAGCAACACCTTGTTCAAAATAATCTTATCATTGACATTGGCACCTTTAA
GCCTCTGAGTGTAGATAAATCGCCCAGGGAAGACAATATATTGGCGTGAC
CCAATCATAACGACAGCAAAAATCTCCTCACGCTTGGGCTCTTCTTTGGC
AGCGGACTCAACAACCTCGGTAGTGGGTTTGGCTTCGGCTTCGAGAGCAG
CTTCGGGTTCTACTTCCGGTTCTGAAACTGGCGGCGGTTCCGTTTGGGAG
AATTTGCGTGTGAATGAAAATGTGGGTCTTGTATAGAGTTTTGGTGAAGG
AAAAGAGCAGAGTTTCGATTTCGAAAGAGAAAGCTGAGGATGGGGATTAG
GGTTTTGGCATGAGATTTTGCAGTGACTGGTAAGAGATGAACAAAGCGCA
AGTGTTGCACAAGATGATGCCGCTGCCATGGCCCTTTGCGTTTGCTTGCC
ACTCGCTAGTTAAGTGAGCTT
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