CX671820

Overview
NameCX671820
Unique NameCX671820
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length775
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX671820_ssr9 microsatellite CX671820_ssr9:9..40. BLAST: Citrus ESTs to Prunus persica proteins V1
CX671820_ssr151 microsatellite CX671820_ssr151:151..164. BLAST: Citrus ESTs to Prunus persica proteins V1
CX671820_ssr253 microsatellite CX671820_ssr253:253..264. BLAST: Citrus ESTs to Prunus persica proteins V1
CX671820_ssr381 microsatellite CX671820_ssr381:381..392. BLAST: Citrus ESTs to Prunus persica proteins V1
CX671820_ssr552 microsatellite CX671820_ssr552:552..563. BLAST: Citrus ESTs to Prunus persica proteins V1
CX671820_ssr566 microsatellite CX671820_ssr566:566..577. BLAST: Citrus ESTs to Prunus persica proteins V1
CX671820_ssr227 microsatellite CX671820_ssr227:227..242. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig5098 contig Csv1_Contig5098:1..775. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX671820 vs. ExPASy Swiss-Prot
Match: KNAP3_MALDO (Homeobox protein knotted-1-like 3 OS=Malus domestica PE=2 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.209e-16
Identity = 61/151 (40.40%), Postives = 71/151 (47.02%), Query Frame = 3
Query:  321 HHNHLSQDLPLHHFTDXXXXXXXXXXXXXXXXXXXXXXXIET--TAPNWLNSALLRSXXXXXXXXHFSD---------TNFLNLRXXXXXXXXXXXXXXXXXXXXQTPNQWLSRTSSSLLHRNHSDVIDDVTPANDSIIAAV---ESADLK 731
            +HNHLSQDLPLHHFTD                         +   APNWLNSALLR+          S+         +NFLNL                     Q  NQWLS++   +LHRNHSDV DDVT A DS+IAA    +SADLK
Sbjct:    3 YHNHLSQDLPLHHFTDQTHHQHQQYQSDQPDPNSKPPEPHHSFQPAPNWLNSALLRNFTNTDTNPTNSNNANNNGGGVSNFLNLH-----------VTASDSAASQASNQWLSQSHRPILHRNHSDVNDDVTVAGDSMIAAALSHDSADLK 142          
The following BLAST results are available for this feature:
BLAST of CX671820 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
KNAP3_MALDO1.209e-1640.40Homeobox protein knotted-1-like 3 OS=Malus domesti... [more]
back to top
Properties
Property NameValue
Genbank descriptionUCRCS10_13C12_g Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-13C12-E23-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX671820 ID=CX671820|Name=CX671820|organism=Citrus sinensis|type=EST|length=775bp
CACACACACTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTTCATTTCA
GTGTAAAACAAAACCAAGCTCTCTGTGGCCCTCCTCGCTTCTTCCTCGCA
AATAAATCTTGTTTCAGTACGAACTCGTCGTAATTTCCCAACCTCCCCAG
CTCTCTCTCTCTCTCCTGCAAAACGGCAACGCATAGACACCTATAGATAC
TTAGACAGATATAGACGGCTATAGACAGATAGATAGATAGATAGACAGGA
ATACACACACACACATCAGCAACAGCAACGAGGACAGCAAGTCAACAGCA
ACAGCACGCACATGGCGTTTCACCACAATCACCTCTCGCAAGACCTTCCT
CTTCATCACTTCACCGACCAACAACAACAGCAACAACAACAACCACCGTC
ACCTCCACAGCAACAACACCACCAACACCAACAAAGCATCGAAACGACAG
CGCCTAATTGGCTTAACTCTGCGCTTCTTCGCTCACAACAGGCGCAGCAA
CAGGCGGCTCACTTCTCCGACACCAATTTCCTTAACCTACGCACCACAGC
AAACAACAACAACAGCAACAACAACAACACTGCCTCCGATTCCGACGCTT
CGCAGACGCCGAACCAATGGCTCTCCCGCACGTCCTCCTCTCTCCTCCAC
CGCAACCACAGTGACGTCATCGACGACGTCACGCCTGCCAACGACTCCAT
CATCGCGGCCGTCGAATCCGCCGATTTGAAGAACGCCAACAGCGAGAACA
TGAACAACGCCAGTACTAATAACAA
back to top