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Overview
Name | CX671820 |
Unique Name | CX671820 |
Type | EST |
Organism | Citrus sinensis (Sweet orange) |
Sequence length | 775 |
Analyses
This EST is derived from or has results from the following analyses
Alignments
Feature Name | Type | Location | Analysis |
CX671820_ssr9 |
microsatellite |
CX671820_ssr9:9..40. |
BLAST: Citrus ESTs to Prunus persica proteins V1 |
CX671820_ssr151 |
microsatellite |
CX671820_ssr151:151..164. |
BLAST: Citrus ESTs to Prunus persica proteins V1 |
CX671820_ssr253 |
microsatellite |
CX671820_ssr253:253..264. |
BLAST: Citrus ESTs to Prunus persica proteins V1 |
CX671820_ssr381 |
microsatellite |
CX671820_ssr381:381..392. |
BLAST: Citrus ESTs to Prunus persica proteins V1 |
CX671820_ssr552 |
microsatellite |
CX671820_ssr552:552..563. |
BLAST: Citrus ESTs to Prunus persica proteins V1 |
CX671820_ssr566 |
microsatellite |
CX671820_ssr566:566..577. |
BLAST: Citrus ESTs to Prunus persica proteins V1 |
CX671820_ssr227 |
microsatellite |
CX671820_ssr227:227..242. |
BLAST: Citrus ESTs to Prunus persica proteins V1 |
Csv1_Contig5098 |
contig |
Csv1_Contig5098:1..775. |
BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1 |
Homology
BLAST of CX671820 vs. ExPASy Swiss-Prot
Match: KNAP3_MALDO (Homeobox protein knotted-1-like 3 OS=Malus domestica PE=2 SV=1) HSP 1 Score: 87.0409 bits (214), Expect = 1.209e-16 Identity = 61/151 (40.40%), Postives = 71/151 (47.02%), Query Frame = 3
Query: 321 HHNHLSQDLPLHHFTDXXXXXXXXXXXXXXXXXXXXXXXIET--TAPNWLNSALLRSXXXXXXXXHFSD---------TNFLNLRXXXXXXXXXXXXXXXXXXXXQTPNQWLSRTSSSLLHRNHSDVIDDVTPANDSIIAAV---ESADLK 731
+HNHLSQDLPLHHFTD + APNWLNSALLR+ S+ +NFLNL Q NQWLS++ +LHRNHSDV DDVT A DS+IAA +SADLK
Sbjct: 3 YHNHLSQDLPLHHFTDQTHHQHQQYQSDQPDPNSKPPEPHHSFQPAPNWLNSALLRNFTNTDTNPTNSNNANNNGGGVSNFLNLH-----------VTASDSAASQASNQWLSQSHRPILHRNHSDVNDDVTVAGDSMIAAALSHDSADLK 142
The following BLAST results are available for this feature:
Properties
Property Name | Value |
Genbank description | UCRCS10_13C12_g Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-13C12-E23-5.g, mRNA sequence. |
Sequences
The
following sequences are available for this feature:
EST sequence >CX671820 ID=CX671820; Name=CX671820; organism=Citrus sinensis; type=EST; length=775bp CACACACACTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTTCATTTCA GTGTAAAACAAAACCAAGCTCTCTGTGGCCCTCCTCGCTTCTTCCTCGCA AATAAATCTTGTTTCAGTACGAACTCGTCGTAATTTCCCAACCTCCCCAG CTCTCTCTCTCTCTCCTGCAAAACGGCAACGCATAGACACCTATAGATAC TTAGACAGATATAGACGGCTATAGACAGATAGATAGATAGATAGACAGGA ATACACACACACACATCAGCAACAGCAACGAGGACAGCAAGTCAACAGCA ACAGCACGCACATGGCGTTTCACCACAATCACCTCTCGCAAGACCTTCCT CTTCATCACTTCACCGACCAACAACAACAGCAACAACAACAACCACCGTC ACCTCCACAGCAACAACACCACCAACACCAACAAAGCATCGAAACGACAG CGCCTAATTGGCTTAACTCTGCGCTTCTTCGCTCACAACAGGCGCAGCAA CAGGCGGCTCACTTCTCCGACACCAATTTCCTTAACCTACGCACCACAGC AAACAACAACAACAGCAACAACAACAACACTGCCTCCGATTCCGACGCTT CGCAGACGCCGAACCAATGGCTCTCCCGCACGTCCTCCTCTCTCCTCCAC CGCAACCACAGTGACGTCATCGACGACGTCACGCCTGCCAACGACTCCAT CATCGCGGCCGTCGAATCCGCCGATTTGAAGAACGCCAACAGCGAGAACA TGAACAACGCCAGTACTAATAACAA back to top
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