CX671815

Overview
NameCX671815
Unique NameCX671815
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length927
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX671815 vs. ExPASy Swiss-Prot
Match: PHR2_ARATH (Blue-light photoreceptor PHR2 OS=Arabidopsis thaliana GN=PHR2 PE=2 SV=2)

HSP 1 Score: 338.191 bits (866), Expect = 4.036e-92
Identity = 170/238 (71.43%), Postives = 196/238 (82.35%), Query Frame = -1
Query:  214 AVYAHREVSHDEVKSEEKIEAAMKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGLPSRGDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAAEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAGSNWLMFELLWRDFFRFITKKYSSAKKVVEAVPATACT 927
            AVYAHREVSHDEVK+E KIE AMK+EG+EVKYFWGSTLYHLDDLPFK+ ++P+NYG F++KV+ +EIRKTI ALDQLK LPSRGDVE GDIPSLLDLG+S +   SQ GKP   +M GGETEAL RLK FAA+ QA+  KGN+ G ++S++GANFSCKISPWLAMG +SPRSMFDELKKT   ISA++      +G    G NWLM+ELLWRDFFRFITKKYSSAK  VEA PATACT
Sbjct:  212 AVYAHREVSHDEVKAEGKIETAMKEEGVEVKYFWGSTLYHLDDLPFKIEDLPSNYGAFKDKVQKLEIRKTIAALDQLKSLPSRGDVELGDIPSLLDLGISPTPRTSQEGKP---TMVGGETEALTRLKSFAADCQARLSKGNQKGGNNSVFGANFSCKISPWLAMGSISPRSMFDELKKT---ISASTTSTTPRNGPGDTGLNWLMYELLWRDFFRFITKKYSSAKTQVEAGPATACT 443          
BLAST of CX671815 vs. ExPASy Swiss-Prot
Match: CRYD_DANRE (Cryptochrome DASH OS=Danio rerio GN=cry-dash PE=2 SV=2)

HSP 1 Score: 134.42 bits (337), Expect = 8.851e-31
Identity = 81/223 (36.32%), Postives = 122/223 (54.71%), Query Frame = -1
Query:  256 HREVSHDEVKSEEKIEAAMKDEGIEVKYFWGSTLYHLDDLPFK-LGEMPTNYGGFREKVKGV-EIRKTIEALDQLKGLPSRGDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAAEYQAQPP-KGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAGSNWLMFELLWRDFFRFITKKYSS 915
            H EV+ +E   EEK++       + V+ FWGSTLYH DDLPF  +G +P  Y  FR+ V+    +R  +   +Q+K  PS   +E G IP+   LG ++     +   P     +GGETEAL RLK +  +  A    K  ++G    + G +FS K SPWLA+GC+SPR +++++KK     +A               + W++FELLWRD+F+F+  KY +
Sbjct:  108 HEEVASEEKSVEEKLKEICCQNKVRVQTFWGSTLYHRDDLPFSHIGGLPDVYTQFRKAVEAQGRVRPVLSTPEQVKSPPS--GLEEGPIPTFDSLGQTEPLDDCRSAFPC----RGGETEALARLKHYFWDTNAVATYKETRNG----MIGVDFSTKFSPWLALGCISPRYIYEQIKKYEVERTA------------NQSTYWVIFELLWRDYFKFVALKYGN 308          
BLAST of CX671815 vs. ExPASy Swiss-Prot
Match: CRYD_GLOVI (Cryptochrome DASH OS=Gloeobacter violaceus GN=cry PE=3 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 4.857e-29
Identity = 82/223 (36.77%), Postives = 122/223 (54.71%), Query Frame = -1
Query:  262 AVYAHREVSHDEVKSEEKIEAAMKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKV-KGVEIRKTIEALDQLKGLPSRGDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAAEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAGSNWLMFELLWRDFFRFITKKY 927
            AV+ H EV+ +E+  E  ++AA+    + V+ FWG+TL H DDLPF +  +P  +  FR++V +   I   + A  +L  LP+   V+PG+IP L DLGL          + A    KGGET  L RL+++   +Q    K  K    + + GA++S K S WLA+GCLS R + ++++   T        ND         + WL+FELLWRD+FRFI  K+
Sbjct:  101 AVHYHGEVTSEELVVERDLQAALAPLNVPVRSFWGTTLVHPDDLPFAIEAIPELFTDFRKQVERSAAINPPLPAPAKLPPLPA---VDPGEIPQLADLGLESPVT----DERAVLQFKGGETSGLARLEEYF--WQKSLLKSYKQ-TRNGMLGADYSSKFSAWLALGCLSARYIHEQVQTYETKRIK----ND--------STYWLIFELLWRDYFRFIAAKH 301          
BLAST of CX671815 vs. ExPASy Swiss-Prot
Match: CRYD_XENLA (Cryptochrome DASH OS=Xenopus laevis GN=cry-dash PE=2 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 2.410e-28
Identity = 76/224 (33.93%), Postives = 122/224 (54.46%), Query Frame = -1
Query:  262 AVYAHREVSHDEVKSEEKIEAAMKDEGIEVKYFWGSTLYHLDDLPFK-LGEMPTNYGGFREKVKGV-EIRKTIEALDQLKGLPSRGDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAAEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAGSNWLMFELLWRDFFRFITKKY 927
            AV  H E + +E   E  ++ A    GI+ + FWGSTLYH +DLPF+ +  +P  Y  FR+ V+   ++R T +  D+LK LPS   +E G +PS  D          +   P +    GGE++ALQRL+ +   ++       KD   + + G ++S K +PWLA+GC+SPR +++++ K              +  ++   + W++FELLWRD+FRF+  KY
Sbjct:  105 AVTLHEEATKEETDVESAVKQACTRLGIKYQTFWGSTLYHREDLPFRHISSLPDVYTQFRKAVETQGKVRPTFQMPDKLKPLPS--GLEEGSVPSHEDFDQQDPLTDPRTAFPCS----GGESQALQRLEHYF--WETNLVASYKD-TRNGLIGLDYSTKFAPWLALGCVSPRYIYEQIGKYE------------KERTANQSTYWVIFELLWRDYFRFVALKY 307          
BLAST of CX671815 vs. ExPASy Swiss-Prot
Match: CRYD_SYNY3 (Cryptochrome DASH OS=Synechocystis sp. (strain PCC 6803) GN=cry PE=1 SV=2)

HSP 1 Score: 119.398 bits (298), Expect = 2.947e-26
Identity = 77/225 (34.22%), Postives = 117/225 (52.00%), Query Frame = -1
Query:  256 VYAHREVSHDEVKSEEKIEAAMKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKV--KGVEIRKTIEALDQLKGLPSRGDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAAEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAGSNWLMFELLWRDFFRFITKKYSS 924
            +Y HREV+ +E+  E  +   +   GIE K +WGSTL H +DLPF + ++P  +  FR+ +  K + IR    A  QL  LPS       +I   L     +          +  + +GGET  L RL+ +   +     K  K+   + + GA++S K SPWLA+GCLSPR ++ E+K+              +   S   ++WL+FELLWRDFFRF+ +KY +
Sbjct:  104 IYYHREVTQEELDVERNLVKQLTILGIEAKGYWGSTLCHPEDLPFSIQDLPDLFTKFRKDIEKKKISIRPCFFAPSQL--LPS------PNIKLELTAPPPEFFPQINFDHRSVLAFQGGETAGLARLQDYF--WHGDRLKDYKE-TRNGMVGADYSSKFSPWLALGCLSPRFIYQEVKRYE------------QERVSNDSTHWLIFELLWRDFFRFVAQKYGN 305          
BLAST of CX671815 vs. ExPASy Swiss-Prot
Match: CRYD_RHOBA (Cryptochrome DASH OS=Rhodopirellula baltica GN=cry PE=3 SV=2)

HSP 1 Score: 111.309 bits (277), Expect = 8.024e-24
Identity = 73/227 (32.16%), Postives = 116/227 (51.10%), Query Frame = -1
Query:  256 AVYAHREVSHDEVKSEEKIEAAMKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKV-KGVEIRKTIEALDQLKG-LPSRGDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFA-AEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAGSNWLMFELLWRDFFRFITKKYSS 927
            AV+ H E   +E  + E ++      GI     +G TL H D+LPF++ + P  +  FR+++ K  E R  +E   ++ G LP   +V  GDIP+L  LGLS      +      N   GG+  A QR++++   E + +  K  ++G    +   N S K SPWLA GCLSPR + D +++              E       + W++FELLWRD+FR+I++K+ +
Sbjct:   98 AVHFHHEPRTEEADTAESVQQLCDQHGIATHVAYGDTLIHPDELPFEIADTPELFTDFRKEIEKQCEARSPLEEPIRIHGTLPE--EVNAGDIPTLESLGLSTPPLDDR----CLNQFTGGQNAAQQRMEEYIWNEDRLRVYKETRNG----MLHPNDSSKFSPWLAQGCLSPRMIADHVRRYE------------EERVKNKSTYWMIFELLWRDYFRWISRKHGA 302          
BLAST of CX671815 vs. ExPASy Swiss-Prot
Match: CRYD_ORYSJ (Cryptochrome DASH, chloroplastic/mitochondrial OS=Oryza sativa subsp. japonica GN=CRYD PE=2 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 2.335e-23
Identity = 76/243 (31.28%), Postives = 118/243 (48.56%), Query Frame = -1
Query:  253 VYAHREVSHDEVKSEEKIEAAM--------------KDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGLPSRGDVEP----GDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKK-FAAEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAGSNWLMFELLWRDFFRFITKKYSSA 924
            VYAH+E   +E+  E  +   +              K    +++  WG+TLYH+DDLPF +  +P  Y  FR+ V+     +    L    G P    ++     G +P+L  LGLS + A             GGE+ AL R+ + F  + Q +  K  ++G    + G ++S K SPWLA G LSPR + +E+K+      A    ND         + W++FEL+WRD+FRFI+ KY ++
Sbjct:  184 VYAHKETCSEELLVEHLVRKGLEQVVIPQGGASNQKKPRNPKLQLIWGATLYHVDDLPFSVNNLPDVYTQFRKAVESKSSVRNCSKLPPSLGPPPGSGLDEIGGWGTVPTLESLGLSMTKA------EKGMHFVGGESAALGRVHEYFWKKDQLKVYKETRNG----MLGPDYSTKFSPWLASGSLSPRYICEEVKRYEKQRIA----ND--------STYWVLFELIWRDYFRFISAKYGNS 404          
BLAST of CX671815 vs. ExPASy Swiss-Prot
Match: CRYD_ARATH (Cryptochrome DASH, chloroplastic/mitochondrial OS=Arabidopsis thaliana GN=CRYD PE=1 SV=2)

HSP 1 Score: 106.686 bits (265), Expect = 1.976e-22
Identity = 72/223 (32.29%), Postives = 117/223 (52.47%), Query Frame = -1
Query:  265 VYAHREVSHDEVKSEEKIEAAMKDEGIEVKY--FWGSTLYHLDDLPFKLGEMPTNYGGFREKVKG-VEIRKTIEALDQLKGLPSRGDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAAEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAGSNWLMFELLWRDFFRFITKK 924
            V+AH+E   +EV  E  +   +K  G   K    WGST+YH DDLPF + ++P  Y  FR+ V+    IR +      L   PS  D   GD+P+L  LG+ +   +++G +       GGE+  + R+  F   ++    K  K+   + + G ++S K SPWLA GC+SPR +++E+++      A +             + W++FEL+WRD+FRF++ K
Sbjct:  183 VFAHKETCSEEVDVERLVNQGLKRVGNSTKLELIWGSTMYHKDDLPFDVFDLPDVYTQFRKSVEAKCSIRSSTRIPLSLGPTPSVDDW--GDVPTLEKLGV-EPQEVTRGMR-----FVGGESAGVGRV--FEYFWKKDLLKVYKE-TRNGMLGPDYSTKFSPWLAFGCISPRFIYEEVQRYEKERVANN------------STYWVLFELIWRDYFRFLSIK 382          
BLAST of CX671815 vs. ExPASy Swiss-Prot
Match: CRYD_SOLLC (Cryptochrome DASH, chloroplastic/mitochondrial OS=Solanum lycopersicum GN=CRYD PE=3 SV=2)

HSP 1 Score: 105.916 bits (263), Expect = 3.371e-22
Identity = 75/240 (31.25%), Postives = 123/240 (51.25%), Query Frame = -1
Query:  256 VYAHREVSHDEVKSEEKIEAAMK------------DEG----IEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVK-GVEIRKTIEALDQLKGLPSRGDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAAEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAGSNWLMFELLWRDFFRFITKKYSS 924
            VYAH+E   +EVK E+ +   ++            D G     +++  WGST+YH+DDLPF    +P  Y  FR+ V+   ++R   +        P  GD   G +P + +LGL Q   +S+G      +  GGE+ AL R+  +   ++    K  K+   + + GA++S K SPWLA G LSPR +++E+K+              +   S   + W++FEL+WRD+FRF++ K ++
Sbjct:  177 VYAHKETCSEEVKVEKMVTRNLQKLVSPSSGGIGNDPGSGNTTKLELVWGSTMYHIDDLPFDCESLPDVYTQFRKSVEYKSKVRNCTKLPTSFGPPPEVGDW--GHVPQVSELGLQQE-KVSKG-----MNFVGGESAALGRVHDYF--WKKDLLKVYKE-TRNGMLGADYSTKFSPWLASGSLSPRFIYEEVKRYE------------KERLSNDSTYWVLFELIWRDYFRFLSIKLAN 393          
BLAST of CX671815 vs. ExPASy Swiss-Prot
Match: CRYD_NATPD (Cryptochrome DASH OS=Natronomonas pharaonis (strain DSM 2160 / ATCC 35678) GN=cry PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 4.121e-20
Identity = 63/225 (28.00%), Postives = 114/225 (50.67%), Query Frame = -1
Query:  256 AVYAHREVSHDEVKSEEKIEAAMKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGLPSRGDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAAEYQ-AQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAGSNWLMFELLWRDFFRFITKKYSS 927
            AVYA  + + +E +    + +A+ D GI ++  W  TLYH DDLP    ++   +  +R++ +     +   +  +   +P+   + PG +P++  LG+S+     +    A    +GGE+   +R++ +  E    +  K  ++G    + GA++S K SPWLA GCLSPR +  E+++              +   +   + WL+FEL WRDFF+F  +KY +
Sbjct:   99 AVYAQTKPATEERRRAADVASALDDAGIALRQRWTHTLYHPDDLPTPPTDIDDTFTPWRKETEAAATVRDPRSAPET--VPTPDGLTPGPVPTVESLGVSEPPTDDR----AVLEFEGGESAGKRRVESYIWEGDHLREYKTTRNG----LLGADYSSKFSPWLAAGCLSPRWLHREVERYE------------DERVANEDTYWLVFELAWRDFFQFQFEKYGA 301          
The following BLAST results are available for this feature:
BLAST of CX671815 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 13
Match NameE-valueIdentityDescription
PHR2_ARATH4.036e-9271.43Blue-light photoreceptor PHR2 OS=Arabidopsis thali... [more]
CRYD_DANRE8.851e-3136.32Cryptochrome DASH OS=Danio rerio GN=cry-dash PE=2 ... [more]
CRYD_GLOVI4.857e-2936.77Cryptochrome DASH OS=Gloeobacter violaceus GN=cry ... [more]
CRYD_XENLA2.410e-2833.93Cryptochrome DASH OS=Xenopus laevis GN=cry-dash PE... [more]
CRYD_SYNY32.947e-2634.22Cryptochrome DASH OS=Synechocystis sp. (strain PCC... [more]
CRYD_RHOBA8.024e-2432.16Cryptochrome DASH OS=Rhodopirellula baltica GN=cry... [more]
CRYD_ORYSJ2.335e-2331.28Cryptochrome DASH, chloroplastic/mitochondrial OS=... [more]
CRYD_ARATH1.976e-2232.29Cryptochrome DASH, chloroplastic/mitochondrial OS=... [more]
CRYD_SOLLC3.371e-2231.25Cryptochrome DASH, chloroplastic/mitochondrial OS=... [more]
CRYD_NATPD4.121e-2028.00Cryptochrome DASH OS=Natronomonas pharaonis (strai... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS10_13C10_b Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-13C10-E19-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX671815 ID=CX671815; Name=CX671815; organism=Citrus sinensis; type=EST; length=927bp
AAAGGGCAAATGAATTAATTGGCCACCAGATGGAAGAGACAGAAAGTCCC
ATAAGTAATCATTTTATATGGCAATGAAATAGAAGTTTGACAAGGGGGCA
CAAGTAACAAGTAAATTTTGGATTCTCATTAAGATACATGCAAGCAAACA
ACCGCTCTGAAACAATATCTTTTTGCCTCACAGTAGAAATTTCTTGATCT
AAGCAAGGGCACCAGTGCAAGCTGTGGCTGGAACAGCTTCAACCACTTTC
TTTGCAGAGCTGTATTTCTTGGTAATGAATCTGAAGAAATCCCTCCACAG
CAATTCAAACATCAACCAGTTTGATCCAGCACCCGATGAGCCACTTTCAC
CATCATTCCACTTTGAGGCAGCAGAAATACTTGTAGCAGTTTTCTTTAGC
TCATCAAACATGGAACGAGGGGACAGGCATCCCATGGCAAGCCAAGGAGA
AATCTTGCAAGAGAAGTTTGCACCATAAATGCTATCATGGTTGCCATCCT
TGTTTCCCTTGGGTGGTTGTGCTTGGTACTCAGCTGCAAATTTTTTTAGC
CTCTGCAGTGCTTCAGTCTCCCCTCCCTTCATAGAATTGGCAGCTGGCTT
TCCACCCTGAGACATTGCAGCACTCTGGCTGAGACCTAGATCCAACAAGG
AAGGAATATCACCAGGCTCAACATCTCCTCGAGACGGCAATCCCTTCAAC
TGATCCAATGCCTCAATCGTCTTCCGAATCTCCACGCCCTTAACCTTCTC
TCTAAACCCACCATAATTAGTCGGCATTTCCCCCAACTTAAACGGCAAAT
CATCAAGATGGTACAAAGTGCTTCCCCAAAAGTACTTCACTTCAATTCCC
TCGTCTTTCATCGCTGCCTCAATCTTCTCCTCCGATTTAACCTCATCATG
TGACACCTCTCTGTGCGCGTACACTGC
back to top