CX671810

Overview
NameCX671810
Unique NameCX671810
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length695
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3899 contig Csv1_Contig3899:10..704. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CX671810 vs. ExPASy Swiss-Prot
Match: WRKY1_ARATH (WRKY transcription factor 1 OS=Arabidopsis thaliana GN=WRKY1 PE=1 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 6.566e-16
Identity = 50/120 (41.67%), Postives = 71/120 (59.17%), Query Frame = 1 
Query:  340 SSGEDGLDEVASDKLQHEPGPVSETRALQSDQEVSTLILSRKSLMLPDTGHLLPSDQERSISSITSEKASQTTDIIPAL--QTGQEVSTPTIREKVSEDGYNWRKYGQKLVRGNEFVRSY 693
            S+    +D+V +   + E  PV+ TR     + + +        ++P   H + S  E  ++S  SEKA + ++   AL  Q+G E ++P IREKV EDGYNWRKYGQKLV+GNEFVRSY
Sbjct:   17 SNETKAVDDVVATTDKAEVIPVAVTRTETVVESLESTDCKELEKLVP---HTVASQSEVDVASPVSEKAPKVSESSGALSLQSGSEGNSPFIREKVMEDGYNWRKYGQKLVKGNEFVRSY 133
The following BLAST results are available for this feature:
BLAST of CX671810 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
WRKY1_ARATH6.566e-1641.67WRKY transcription factor 1 OS=Arabidopsis thalian... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS10_13C07_g Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-13C07-E13-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX671810 ID=CX671810; Name=CX671810; organism=Citrus sinensis; type=EST; length=695bp
CTCTCCCCTCCTCTGTTCTCTTCTCCTCTCTCACGTACTCTAAAATTAAC
TAATCAACCTCTGTAGGGTTGACTCAACGCTCGAGTCTCGAGCCGCCGAG
ATCCGCGGCTGTGATCGAATCAAAAGTCAACGGTTGTACGTGAAATTGTA
GCACGTGATCATGACCGTGTTGCTAGGGCTTGCTTGTCTGGTGCCTTGAA
CTCGACAACGAAGCTGGTTTGGGTCACCAGCACTTCACCTTTATTTTCAG
CCAAGGTGAATTCAGTGATGACTAACTTGAGCTTGAGTTGATCTGAACTG
TTCTCTTATTGACAAACAAATCTCCAAGTCGATATGGTTTCTTCTGGGGA
AGATGGATTGGATGAAGTTGCTTCTGATAAATTGCAGCATGAACCAGGCC
CTGTTAGTGAAACTCGTGCATTGCAATCTGATCAAGAGGTCAGCACTCTA
ATACTATCAAGGAAAAGTCTAATGCTACCTGATACTGGTCACTTGCTGCC
ATCGGATCAAGAAAGAAGCATTTCTTCTATAACATCCGAGAAAGCATCAC
AGACTACTGACATCATCCCTGCATTACAAACTGGTCAGGAAGTGAGCACT
CCTACAATACGTGAGAAAGTATCAGAGGATGGATATAACTGGCGAAAGTA
TGGGCAAAAACTTGTTAGAGGGAATGAATTTGTACGAAGCTATTA
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