CX671794

Overview
NameCX671794
Unique NameCX671794
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length920
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig317 contig Csv1_Contig317:41..960. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX671794 vs. ExPASy Swiss-Prot
Match: QKIL1_ARATH (KH domain-containing protein At4g26475 OS=Arabidopsis thaliana GN=At4g26475 PE=2 SV=1)

HSP 1 Score: 206.838 bits (525), Expect = 1.381e-52
Identity = 101/114 (88.60%), Postives = 111/114 (97.37%), Query Frame = -1
Query:  579 ECRVLIRGRGSIKDPAREEMMRGKPGYEHLNEPLHILVEAELPVEIVDARLMQAREILEDLLKPVDESHDFYKKQQLRELALLNGTLREEGSPMSGSVSPFHNSLGMKRAKTRG 920
            +CRVLIRGRGSIKDP +E+MMRGKPGYEHLNEPLHILVEAELP+EIVDARLMQAREIL+DLL PV+E+HDFYKKQQLRELALLNG+LREEGSPMSGS+SP+ NSLGMKRAKTRG
Sbjct:  196 DCRVLIRGRGSIKDPIKEDMMRGKPGYEHLNEPLHILVEAELPIEIVDARLMQAREILDDLLTPVEETHDFYKKQQLRELALLNGSLREEGSPMSGSISPY-NSLGMKRAKTRG 308          
BLAST of CX671794 vs. ExPASy Swiss-Prot
Match: QKIL2_ARATH (KH domain-containing protein At5g56140 OS=Arabidopsis thaliana GN=At5g56140 PE=2 SV=1)

HSP 1 Score: 204.142 bits (518), Expect = 8.954e-52
Identity = 101/113 (89.38%), Postives = 109/113 (96.46%), Query Frame = -1
Query:  582 ECRVLIRGRGSIKDPAREEMMRGKPGYEHLNEPLHILVEAELPVEIVDARLMQAREILEDLLKPVDESHDFYKKQQLRELALLNGTLREEGSPMSGSVSPFHNSLGMKRAKTR 920
            +CRVLIRGRGSIKDP +EEMMRGKPGYEHLNEPLHILVEAELP+EIVDARLMQAREIL+DLL P++E+HD YKKQQLRELALLNGTLREEGSPMSGSVSP+ NSLGMKRAKTR
Sbjct:  202 DCRVLIRGRGSIKDPIKEEMMRGKPGYEHLNEPLHILVEAELPIEIVDARLMQAREILDDLLTPMEETHDMYKKQQLRELALLNGTLREEGSPMSGSVSPY-NSLGMKRAKTR 313          
BLAST of CX671794 vs. ExPASy Swiss-Prot
Match: QKIL4_ARATH (KH domain-containing protein At3g08620 OS=Arabidopsis thaliana GN=At3g08620 PE=2 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 2.141e-37
Identity = 77/111 (69.37%), Postives = 92/111 (82.88%), Query Frame = -1
Query:  585 CRVLIRGRGSIKDPAREEMMRGKPGYEHLNEPLHILVEAELPVEIVDARLMQAREILEDLLKPVDESHDFYKKQQLRELALLNGTLREEGSPMSGSVSPFHNSLGMKRAKT 917
            CRV IRG+GSIKDP +EE ++GKPGYEHLNE LHIL+EA+LP++IVD +L QA+EI+E+L+KPVDES D+ K+QQLRELALLN  LRE     SGSVSPF NS  MKR KT
Sbjct:  172 CRVYIRGKGSIKDPEKEEKLKGKPGYEHLNEQLHILIEADLPIDIVDIKLRQAQEIIEELVKPVDESQDYIKRQQLRELALLNSNLRENSPGPSGSVSPF-NSNAMKRPKT 281          
BLAST of CX671794 vs. ExPASy Swiss-Prot
Match: QKIL3_ARATH (KH domain-containing protein At2g38610 OS=Arabidopsis thaliana GN=At2g38610 PE=1 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 6.447e-34
Identity = 77/114 (67.54%), Postives = 91/114 (79.82%), Query Frame = -1
Query:  585 CRVLIRGRGSIKDPAREEMMRGKPGYEHLNEPLHILVEAELPVEIVDARLMQAREILEDLLKPVDESHDFYKKQQLRELALLN-GTLREE--GSPMSGSVSPFHNSLGMKRAKT 917
            CRV IRG+GSIKDP +E+ +RG+PGYEHLNE LHIL+EA+LP  IV+ RL QA+EI+E+LLKPVDES DF K+QQLRELALLN   LREE  G    GSVSPF++S   KR KT
Sbjct:  173 CRVFIRGKGSIKDPEKEDKLRGRPGYEHLNEQLHILIEADLPASIVEIRLRQAQEIIEELLKPVDESQDFIKRQQLRELALLNSNNLREESPGPSGGGSVSPFNSS--GKRPKT 284          
BLAST of CX671794 vs. ExPASy Swiss-Prot
Match: QKIL5_ARATH (KH domain-containing protein At1g09660 OS=Arabidopsis thaliana GN=At1g09660 PE=2 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 1.029e-31
Identity = 70/113 (61.95%), Postives = 87/113 (76.99%), Query Frame = -1
Query:  585 CRVLIRGRGSIKDPAREEMMRGKPGYEHLNEPLHILVEAELPVEIVDARLMQAREILEDLLKPVDESHDFYKKQQLRELALLNGTLREEG-SP-MSGSVSPFHNSLGMKRAKT 917
            CRV IRGRGS+KD  +EE ++GKPGYEHL EPLH+L+EAELP +I+++RL  A   LE LLKP+DES D YK++QL+ELA LNGTLREE  SP +S  +SP  +    KRAKT
Sbjct:  184 CRVFIRGRGSVKDTVKEEKLKGKPGYEHLCEPLHVLIEAELPEDIINSRLEHAVHFLESLLKPMDESMDHYKREQLKELAALNGTLREESPSPSLSPCLSPSMSPFNSKRAKT 296          
BLAST of CX671794 vs. ExPASy Swiss-Prot
Match: QKI_RAT (Protein quaking OS=Rattus norvegicus GN=Qki PE=1 SV=2)

HSP 1 Score: 88.1965 bits (217), Expect = 7.161e-17
Identity = 41/88 (46.59%), Postives = 59/88 (67.05%), Query Frame = -1
Query:  654 CRVLIRGRGSIKDPAREEMMRGKPGYEHLNEPLHILVEAELPVEIVDARLMQAREILEDLLKPVDESHDFYKKQQLRELALLNGTLRE 917
            C++++RG+GS++D  +EE  RGKP +EHLNE LH+L+  E      + +L +A E ++ LL P  E  D  KK QL ELA+LNGT R+
Sbjct:  119 CKIMVRGKGSMRDKKKEEQNRGKPNWEHLNEDLHVLITVEDAQNRAEIKLKRAVEEVKKLLVPAAEGEDSLKKMQLMELAILNGTYRD 206          
BLAST of CX671794 vs. ExPASy Swiss-Prot
Match: QKI_PIG (Protein quaking OS=Sus scrofa GN=QKI PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 7.161e-17
Identity = 41/88 (46.59%), Postives = 59/88 (67.05%), Query Frame = -1
Query:  654 CRVLIRGRGSIKDPAREEMMRGKPGYEHLNEPLHILVEAELPVEIVDARLMQAREILEDLLKPVDESHDFYKKQQLRELALLNGTLRE 917
            C++++RG+GS++D  +EE  RGKP +EHLNE LH+L+  E      + +L +A E ++ LL P  E  D  KK QL ELA+LNGT R+
Sbjct:  119 CKIMVRGKGSMRDKKKEEQNRGKPNWEHLNEDLHVLITVEDAQNRAEIKLKRAVEEVKKLLVPAAEGEDSLKKMQLMELAILNGTYRD 206          
BLAST of CX671794 vs. ExPASy Swiss-Prot
Match: QKI_MOUSE (Protein quaking OS=Mus musculus GN=Qki PE=1 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 7.161e-17
Identity = 41/88 (46.59%), Postives = 59/88 (67.05%), Query Frame = -1
Query:  654 CRVLIRGRGSIKDPAREEMMRGKPGYEHLNEPLHILVEAELPVEIVDARLMQAREILEDLLKPVDESHDFYKKQQLRELALLNGTLRE 917
            C++++RG+GS++D  +EE  RGKP +EHLNE LH+L+  E      + +L +A E ++ LL P  E  D  KK QL ELA+LNGT R+
Sbjct:  119 CKIMVRGKGSMRDKKKEEQNRGKPNWEHLNEDLHVLITVEDAQNRAEIKLKRAVEEVKKLLVPAAEGEDSLKKMQLMELAILNGTYRD 206          
BLAST of CX671794 vs. ExPASy Swiss-Prot
Match: QKI_HUMAN (Protein quaking OS=Homo sapiens GN=QKI PE=1 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 7.161e-17
Identity = 41/88 (46.59%), Postives = 59/88 (67.05%), Query Frame = -1
Query:  654 CRVLIRGRGSIKDPAREEMMRGKPGYEHLNEPLHILVEAELPVEIVDARLMQAREILEDLLKPVDESHDFYKKQQLRELALLNGTLRE 917
            C++++RG+GS++D  +EE  RGKP +EHLNE LH+L+  E      + +L +A E ++ LL P  E  D  KK QL ELA+LNGT R+
Sbjct:  119 CKIMVRGKGSMRDKKKEEQNRGKPNWEHLNEDLHVLITVEDAQNRAEIKLKRAVEEVKKLLVPAAEGEDSLKKMQLMELAILNGTYRD 206          
BLAST of CX671794 vs. ExPASy Swiss-Prot
Match: QKI_HORSE (Protein quaking OS=Equus caballus GN=QKI PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 7.161e-17
Identity = 41/88 (46.59%), Postives = 59/88 (67.05%), Query Frame = -1
Query:  654 CRVLIRGRGSIKDPAREEMMRGKPGYEHLNEPLHILVEAELPVEIVDARLMQAREILEDLLKPVDESHDFYKKQQLRELALLNGTLRE 917
            C++++RG+GS++D  +EE  RGKP +EHLNE LH+L+  E      + +L +A E ++ LL P  E  D  KK QL ELA+LNGT R+
Sbjct:  119 CKIMVRGKGSMRDKKKEEQNRGKPNWEHLNEDLHVLITVEDAQNRAEIKLKRAVEEVKKLLVPAAEGEDSLKKMQLMELAILNGTYRD 206          
The following BLAST results are available for this feature:
BLAST of CX671794 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 20
Match NameE-valueIdentityDescription
QKIL1_ARATH1.381e-5288.60KH domain-containing protein At4g26475 OS=Arabidop... [more]
QKIL2_ARATH8.954e-5289.38KH domain-containing protein At5g56140 OS=Arabidop... [more]
QKIL4_ARATH2.141e-3769.37KH domain-containing protein At3g08620 OS=Arabidop... [more]
QKIL3_ARATH6.447e-3467.54KH domain-containing protein At2g38610 OS=Arabidop... [more]
QKIL5_ARATH1.029e-3161.95KH domain-containing protein At1g09660 OS=Arabidop... [more]
QKI_RAT7.161e-1746.59Protein quaking OS=Rattus norvegicus GN=Qki PE=1 S... [more]
QKI_PIG7.161e-1746.59Protein quaking OS=Sus scrofa GN=QKI PE=2 SV=1[more]
QKI_MOUSE7.161e-1746.59Protein quaking OS=Mus musculus GN=Qki PE=1 SV=1[more]
QKI_HUMAN7.161e-1746.59Protein quaking OS=Homo sapiens GN=QKI PE=1 SV=1[more]
QKI_HORSE7.161e-1746.59Protein quaking OS=Equus caballus GN=QKI PE=2 SV=1[more]

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Properties
Property NameValue
Genbank descriptionUCRCS10_13B11_b Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-13B11-C21-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX671794 ID=CX671794; Name=CX671794; organism=Citrus sinensis; type=EST; length=920bp
TTTTTTTTAATGAAAAACAAAATATGTAGTATGAATTAAAGAAAACAAAT
AAATTTATCGTAGTCATAGACAGAATGGCAGAGATTGCCTTCTCAAAAAA
CCTAAATAACCATCTAAAACTAGTGCATAACCCTTCAACCAAAACCGCCG
TTGCCTCCACCAACCCACACTTCACATTTAAGTATAAAAACCATACCCTT
TACTCCCCCCATAAAAAACCCCGACACTGTATCAAAACTGTTATTACAAG
CTCATAATATATAGCCTAACAATACAAGAACGGCACTGGAGAGATAATGG
TCTGACCAATTGCCTTAAGCAACAAATAAAATGCAACCCCGAGGACTCAA
ACCAACCATTGCTTTACTACAAAATACCGTCATTAAACCTCCTCCAAGCA
GAGGGAAAACACACTTTCATATAGAAACAAGTTAGAACTAGCACACGCTA
TAGTGCCAGTGCCCCGATGGCAGTTGGAGGCATTTGTCCGACACAGCCAC
ACCTGTGGTATGAAAACTGCCGCTTACTAGCAGATGCTAACAAACAAGCT
CCAAAAGCCTAATATTTTGGGTCCATTACCCTCTAGTCTTAGCTCTCTTC
ATACCAAGGCTGTTATGGAAGGGGGACACTGAACCAGACATTGGAGAACC
CTCTTCACGAAGTGTACCATTGAGCAGTGCAAGCTCTCGCAGTTGTTGTT
TCTTGTAGAAATCATGGGATTCATCCACAGGCTTGAGCAAATCTTCAAGT
ATCTCACGTGCTTGCATTAGGCGAGCATCAACTATCTCAACTGGCAATTC
TGCCTCAACCAGGATATGGAGAGGCTCATTCAAATGTTCATACCCAGGTT
TTCCTCTCATCATTTCTTCCCTTGCTGGATCCTTTATACTGCCGCGTCCC
CTAATCAGAACACGGCATTC
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