CX671766

Overview
NameCX671766
Unique NameCX671766
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length879
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX671766_ssr187 microsatellite CX671766_ssr187:187..198. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CX671766 vs. ExPASy Swiss-Prot
Match: APMAP_CHICK (Adipocyte plasma membrane-associated protein OS=Gallus gallus GN=APMAP PE=2 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 6.719e-25
Identity = 79/212 (37.26%), Postives = 111/212 (52.36%), Query Frame = -1
Query:  265 DVIDASDGT-LYFTVSSTKYTPADFYKDMAEGNPYGQLLKYDPKSNQTTVLQEGFYFANGVALSKDEDFVVVCESWKFRCRRYWLKGDRNGTLDTFAENLPGGPDNINLAPDGSFWIAL-IKMNQTGVKAIQNCREK-WELLEAYPGL----ISLLLPMGSDAGARVVKVDGIDGKIIRDFNDPNATYLSFVTSAVEYNDNLFLASLQSNFI 879
            D+    DG  +YFT SS+K+   DF   + EG   G+LL+YD  + +  VL  G  F NGV LS  EDFV+V E+   R RRY++ G   G  D F EN+PG PDNI L+  G +W+A+ +     G   +    EK W     +  L    ++ LLP  S     VV++    G   R F+DP    + +V+ A E+N  L+L S +S FI
Sbjct:  201 DLTVTQDGRKIYFTDSSSKWQRRDFLFLVMEGTDDGRLLEYDTVTKEVKVLMVGLRFPNGVQLSPAEDFVLVLETAMARIRRYYVSGLMKGGADMFVENMPGLPDNIRLSSSGGYWVAMPVVRPNPGFSMLDFLSEKPWIKRMIFKLLSQETVTKLLPKRS----LVVELSE-TGSYRRSFHDPTGLTVPYVSEAHEHNGYLYLGSFRSPFI 407          
BLAST of CX671766 vs. ExPASy Swiss-Prot
Match: APMAP_BOVIN (Adipocyte plasma membrane-associated protein OS=Bos taurus GN=APMAP PE=2 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 2.390e-22
Identity = 66/207 (31.88%), Postives = 106/207 (51.21%), Query Frame = -1
Query:  265 DVIDASDGT-LYFTVSSTKYTPADFYKDMAEGNPYGQLLKYDPKSNQTTVLQEGFYFANGVALSKDEDFVVVCESWKFRCRRYWLKGDRNGTLDTFAENLPGGPDNINLAPDGSFWIALIKMN-QTGVKAIQNCREKWELLEAYPGLISLLLPMGSDAGARVVKVDGIDGKIIRDFNDPNATYLSFVTSAVEYNDNLFLASLQSNFI 879
            D+    DG  +YFT SS+K+   D+   + EG   G+LL+YD ++ +  VL +   F NGV LS  EDFV+V E    R RR+++ G   G  D F ENLPG PDNI  +  G +W+++  +    G   +    E+  L +    L S    M       +V      G  +R  +DP    +++V+ A E++ +L+L S ++ ++
Sbjct:  201 DLTVTRDGRKIYFTDSSSKWQRRDYLLLLMEGTDDGRLLEYDTQTKEVKVLLDHLRFPNGVQLSPAEDFVLVVELAMVRIRRFYVSGLMKGGADVFVENLPGFPDNIRASSSGGYWVSMAAIRANPGFSMLDFLSERPFLKKVIFKLFSQETVMKFVPRYSLVLELSDSGTFLRSLHDPEGQVVTYVSEAHEHSGHLYLGSFRAPYL 407          
BLAST of CX671766 vs. ExPASy Swiss-Prot
Match: APMAP_SALSA (Adipocyte plasma membrane-associated protein OS=Salmo salar GN=apmap PE=2 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 4.076e-22
Identity = 64/202 (31.68%), Postives = 107/202 (52.97%), Query Frame = -1
Query:  250 LYFTVSSTKYTPADFYKDMAEGNPYGQLLKYDPKSNQTTVLQEGFYFANGVALSKDEDFVVVCESWKFRCRRYWLKGDRNGTLDTFAENLPGGPDNINLAPDGSFWIALIKMN-QTGVKAIQNCREKWELLEAYPGLISLLLPMGSDAGARVVKVDGIDGKIIRDFNDPNATYLSFVTSAVEYNDNLFLASLQSNFIGVLPL 852
            +YFT SS+++   D+   + E    G++L+YD ++ + TVL E   FANG+ L  DE+ V+V E+   R RR  + G   G +DTF +NLPG PDNI  +  G +W+A+  +    G   +    +K  + +    L S  + M       +V      G  +R F+DP+    ++V+ A E++ +L+L S +S ++  L L
Sbjct:  212 VYFTDSSSRWQRRDYLHLIMEATADGRVLEYDTETKEVTVLMENLRFANGIQLFPDEESVLVAETTMARIRRVHVSGLNKGGMDTFVDNLPGFPDNIRRSSSGGYWVAMSAVRPNPGFSMLDFLSQKPWIKKLIFKLFSQDVLMKFVPRYSLVIELQESGACMRSFHDPHGMVAAYVSEAHEHDGHLYLGSFRSPYLCKLDL 413          
BLAST of CX671766 vs. ExPASy Swiss-Prot
Match: APMAP_RAT (Adipocyte plasma membrane-associated protein OS=Rattus norvegicus GN=Apmap PE=2 SV=2)

HSP 1 Score: 104.375 bits (259), Expect = 9.081e-22
Identity = 70/215 (32.56%), Postives = 106/215 (49.30%), Query Frame = -1
Query:  241 DVIDASDGT-LYFTVSSTKYTPADFYKDMAEGNPYGQLLKYDPKSNQTTVLQEGFYFANGVALSKDEDFVVVCESWKFRCRRYWLKGDRNGTLDTFAENLPGGPDNINLAPDGSFWIALIKMN-QTGVKAIQNCREKWELLEAYPGLISLLLPMGSDAGARVVKVDGIDGKIIRDFNDPNATYLSFVTSAVEYNDNLFLASLQSNFIGVLPLHPL 879
            D+    DG  +YFT SS+K+   D+   + EG   G+LL+YD  + +  VL +   F NGV LS +EDFV+V E+   R RR ++ G   G  D F EN+PG PDNI  +  G +W+A   +    G   +    +K  +      L S    M       +V      G   R  +DP+   +++V+ A E++  L+L S +S FI  L L  +
Sbjct:  162 DLTITRDGRKIYFTDSSSKWQRRDYLLLVMEGTDDGRLLEYDTVTKEVKVLLDQLQFPNGVQLSPEEDFVLVAETAMARIRRVYVSGLMKGGADMFVENMPGFPDNIRPSSSGGYWVAAATIRANPGFSMLDFLSDKPFIKRMIFKLFSQETVMKFVPRYSLVLEVSDSGAFRRSLHDPDGQVVTYVSEAHEHDGYLYLGSFRSPFICRLSLQSI 376          
BLAST of CX671766 vs. ExPASy Swiss-Prot
Match: APMAP_DANRE (Adipocyte plasma membrane-associated protein OS=Danio rerio GN=apmap PE=2 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 9.081e-22
Identity = 65/210 (30.95%), Postives = 107/210 (50.95%), Query Frame = -1
Query:  250 LYFTVSSTKYTPADFYKDMAEGNPYGQLLKYDPKSNQTTVLQEGFYFANGVALSKDEDFVVVCESWKFRCRRYWLKGDRNGTLDTFAENLPGGPDNINLAPDGSFWIALIKMN-QTGVKAIQNCREKWELLEAYPGLISLLLPMGSD--------AGARVVKVDGIDGKIIRDFNDPNATYLSFVTSAVEYNDNLFLASLQSNFIGVLPL 852
            +YFT SS+++   DF   + E    G++L+YD ++ +  V+ E   F NG+ L  DE+ V+V E+   R +R  + G   G +DTF ENLPG PDNI  +  G +W+A+  +    G   +       + L   P L  L+  + S           + VV++   DG  +R F+DP     ++ + A EY+ +L+L S +S ++  L L
Sbjct:  211 VYFTDSSSRWQRRDFMHLIMEATADGRVLEYDTETKEVNVMMENLRFPNGIQLFPDEESVLVAETTMARIKRVHVSGLNKGGMDTFIENLPGFPDNIRRSSSGGYWVAMSAVRPNPGFSML-------DFLSQRPWLKKLIFKLFSQDTLLKFVPRYSLVVELQS-DGTCVRSFHDPQGLVSAYSSEAHEYSGHLYLGSFRSPYLCKLDL 412          
BLAST of CX671766 vs. ExPASy Swiss-Prot
Match: APMAP_MOUSE (Adipocyte plasma membrane-associated protein OS=Mus musculus GN=Apmap PE=1 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 5.886e-21
Identity = 68/215 (31.63%), Postives = 105/215 (48.84%), Query Frame = -1
Query:  241 DVIDASDGT-LYFTVSSTKYTPADFYKDMAEGNPYGQLLKYDPKSNQTTVLQEGFYFANGVALSKDEDFVVVCESWKFRCRRYWLKGDRNGTLDTFAENLPGGPDNINLAPDGSFWIALIKMN-QTGVKAIQNCREKWELLEAYPGLISLLLPMGSDAGARVVKVDGIDGKIIRDFNDPNATYLSFVTSAVEYNDNLFLASLQSNFIGVLPLHPL 879
            D+    DG  +YFT SS+K+   D+   + E    G+LL+YD  + +  VL +   F NGV LS +EDFV+V E+   R RR ++ G   G  D F EN+PG PDNI  +  G +W+A   +    G   +    +K  +      + S    M       +V      G   R  +DP+   +++V+ A E++  L+L S +S FI  L L  +
Sbjct:  201 DLTVTRDGRKIYFTDSSSKWQRRDYLLLVMEATDDGRLLEYDTVTKEVKVLLDQLQFPNGVQLSPEEDFVLVAETTMARIRRVYVSGLMKGGADMFVENMPGFPDNIRPSSSGGYWVAAATIRANPGFSMLDFLSDKPFIKRMIFKMFSQETVMKFVPRYSLVLEVSDSGAFRRSLHDPDGQVVTYVSEAHEHDGYLYLGSFRSPFICRLSLQSI 415          
BLAST of CX671766 vs. ExPASy Swiss-Prot
Match: APMAP_HUMAN (Adipocyte plasma membrane-associated protein OS=Homo sapiens GN=APMAP PE=1 SV=2)

HSP 1 Score: 99.3673 bits (246), Expect = 2.921e-20
Identity = 66/212 (31.13%), Postives = 103/212 (48.58%), Query Frame = -1
Query:  250 DVIDASDGT-LYFTVSSTKYTPADFYKDMAEGNPYGQLLKYDPKSNQTTVLQEGFYFANGVALSKDEDFVVVCESWKFRCRRYWLKGDRNGTLDTFAENLPGGPDNINLAPDGSFWIALIKMN-QTGVKAIQNCREKWELLEAYPGLISLLLPMGSDAGARVVKVDGIDGKIIRDFNDPNATYLSFVTSAVEYNDNLFLASLQSNFIGVLPL 879
            D+    DG  +YFT SS+K+   D+   + EG   G+LL+YD  + +  VL +   F NGV LS  EDFV+V E+   R RR ++ G   G  D F EN+PG PDNI  +  G +W+ +  +    G   +    E+  +      L S    M       +V      G   R  +DP+    ++++   E++ +L+L S +S F+  L L
Sbjct:  202 DLTVTQDGRKIYFTDSSSKWQRRDYLLLVMEGTDDGRLLEYDTVTREVKVLLDQLRFPNGVQLSPAEDFVLVAETTMARIRRVYVSGLMKGGADLFVENMPGFPDNIRPSSSGGYWVGMSTIRPNPGFSMLDFLSERPWIKRMIFKLFSQETVMKFVPRYSLVLELSDSGAFRRSLHDPDGLVATYISEVHEHDGHLYLGSFRSPFLCRLSL 413          
BLAST of CX671766 vs. ExPASy Swiss-Prot
Match: STS3_ARATH (Strictosidine synthase 3 OS=Arabidopsis thaliana GN=SS3 PE=2 SV=2)

HSP 1 Score: 89.7373 bits (221), Expect = 2.315e-17
Identity = 63/209 (30.14%), Postives = 94/209 (44.98%), Query Frame = -1
Query:  250 IDASDGTLYFTVSSTKYTPADFYKDMAEGNPYGQLLKYDPKSNQTTVLQEGFYFANGVALSKDEDFVVVCESWKFRCRRYWLKGDRNGTLDTFAENLPGGPDNI-NLAPDGSFWIALIKMNQTGVKAIQNCREKWELLEAYPGLISLLLPMGSDAGARVVKVDGIDGKIIRDFNDPNATYLSFVTSAVEYNDNLFLASLQSNFIGVLPL 873
            +D + G +YFT  S+ + P D  K +A  +  G+  KYDP     TVL EG   + G A+S D  FV+V +  K   +RYW+KG + GT + F  N    PDNI  +   G+FW+A +  + TG                         P    A    VKV    GK+++     +    + V+   EY   L++ +L   F G+L L
Sbjct:  152 VDPTTGVVYFTSFSSTFGPRDVLKAVATKDSTGKFFKYDPSKKVVTVLMEGLSGSAGCAVSSDGSFVLVGQFTKSNIKRYWIKGSKAGTSEDFT-NSVSNPDNIKRIGSTGNFWVASVVNSATG-------------------------PTNPSA----VKVSSA-GKVLQTIPLKDKFGDTLVSEVNEYKGQLYIGALFGPFAGILKL 329          
BLAST of CX671766 vs. ExPASy Swiss-Prot
Match: STS1_ARATH (Strictosidine synthase 1 OS=Arabidopsis thaliana GN=SS1 PE=2 SV=2)

HSP 1 Score: 84.7297 bits (208), Expect = 7.446e-16
Identity = 65/222 (29.28%), Postives = 101/222 (45.50%), Query Frame = -1
Query:  232 IDASDGTLYFTVSSTKYTPADFYKDMAEGNPYGQLLKYDPKSNQTTVLQEGFYFANGVALSKDEDFVVVCESWKFRCRRYWLKGDRNGTLDTFAENLPGGPDNI-NLAPDGSFWIA------LIKMNQTGVKAIQNCREKWELLEAYPGLISLLLPMGSDAGARVVKVDGIDGKIIRD-FNDPNATYLSFVTSAVEYNDNLFLASLQSNFIGVLPLHPLNTP 873
            +D + G +YFT  S++++P      +   +  G+L KYDP +   TVL EG   + G A+S D  FV+V +  K   +RYW+KG + G+ + F  N    PDNI  +   G+FW+A      ++  N + VK   N     E+L+  P                           ++D F D   T LS V    E+  NL++ +L   F G+L L   + P
Sbjct:  150 VDPTTGVVYFTSFSSRFSPIQVLIALGLKDATGKLYKYDPSTKVVTVLMEGLSGSAGCAVSSDGSFVLVSQFTKSNIKRYWIKGPKAGSSEDFT-NSVSNPDNIKRIGSTGNFWVASVVNKIIVPTNPSAVKVNSN----GEVLQTIP---------------------------LKDKFGD---TLLSEVN---EFEGNLYIGTLTGPFAGILKLEKGSCP 333          
BLAST of CX671766 vs. ExPASy Swiss-Prot
Match: STSY_RAUSE (Strictosidine synthase OS=Rauvolfia serpentina GN=STR1 PE=1 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 4.517e-13
Identity = 39/115 (33.91%), Postives = 61/115 (53.04%), Query Frame = -1
Query:  529 IDASDGTLYFTVSSTKYTPADFYKDMAEGNPYGQLLKYDPKSNQTTVLQEGFYFANGVALSKDEDFVVVCESWKFRCRRYWLKGDRNGTLDTFAENLPGGPDNINLAPDGSFWIA 873
            +D   G +YFT  ST Y      + M   +  G+L+KYDP + +TT+L +  +   G  +S D  FV+V E    +  +YWL+G + GT +   + +P  P NI    DG FW++
Sbjct:  155 VDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKETTLLLKELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVK-IP-NPGNIKRNADGHFWVS 267          
The following BLAST results are available for this feature:
BLAST of CX671766 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
APMAP_CHICK6.719e-2537.26Adipocyte plasma membrane-associated protein OS=Ga... [more]
APMAP_BOVIN2.390e-2231.88Adipocyte plasma membrane-associated protein OS=Bo... [more]
APMAP_SALSA4.076e-2231.68Adipocyte plasma membrane-associated protein OS=Sa... [more]
APMAP_RAT9.081e-2232.56Adipocyte plasma membrane-associated protein OS=Ra... [more]
APMAP_DANRE9.081e-2230.95Adipocyte plasma membrane-associated protein OS=Da... [more]
APMAP_MOUSE5.886e-2131.63Adipocyte plasma membrane-associated protein OS=Mu... [more]
APMAP_HUMAN2.921e-2031.13Adipocyte plasma membrane-associated protein OS=Ho... [more]
STS3_ARATH2.315e-1730.14Strictosidine synthase 3 OS=Arabidopsis thaliana G... [more]
STS1_ARATH7.446e-1629.28Strictosidine synthase 1 OS=Arabidopsis thaliana G... [more]
STSY_RAUSE4.517e-1333.91Strictosidine synthase OS=Rauvolfia serpentina GN=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS10_13A09_b Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-13A09-A17-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX671766 ID=CX671766; Name=CX671766; organism=Citrus sinensis; type=EST; length=879bp
AAGGAGAGACCTTTATTGAAATAAAAGGAAAAGATAACAAGAAGCAAGCT
AGAGGGGAGAACATAAAGCCATAACCCCTTAAAGAAAGACTTGCCGAAAA
TAAAACACAAACCAAACCAAAACACCGACAAAAACAGACTTATTATAATT
TAGTAGAAGCATCAAACATGCACGGACGGCATGGTAATGCATGCATGCAT
CCTGTTTCTATATGGTAGCCAGTAGTGGTTTTGGAGTATTGAGGGGATGG
AGTGGCAGTACCCCAATGAAATTTGATTGAAGGCTAGCCAAGAAGAGATT
GTCATTATACTCCACAGCTGAAGTGACAAATGATAAATAGGTTGCATTCG
GATCGTTAAAATCCCTGATTATTTTGCCATCAATTCCGTCGACTTTGACT
ACTCTTGCACCCGCATCACTGCCCATAGGGAGGAGTAGGCTGATTAATCC
TGGATATGCTTCCAATAGTTCCCATTTCTCCCTGCAGTTTTGGATAGCCT
TCACCCCAGTCTGATTCATCTTGATTAAAGCAATCCAAAAAGAGCCATCG
GGGGCAAGATTGATGTTATCAGGTCCACCTGGAAGGTTTTCAGCAAAAGT
ATCTAATGTTCCATTGCGATCGCCCTTCAGCCAATATCTTCTGCATCGGA
ATTTCCATGATTCACAAACGACCACAAAGTCTTCATCTTTTGAGAGTGCA
ACGCCATTAGCAAAGTAAAATCCCTCTTGCAAAACTGTTGTTTGGTTCGA
TTTAGGATCATATTTGAGCAACTGGCCGTAAGGATTTCCCTCAGCCATGT
CTTTGTAGAAATCTGCGGGGGTATATTTGGTGCTTGAGACAGTAAAATAC
AACGTGCCATCTGATGCATCGATCACATC
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