CX671758

Overview
NameCX671758
Unique NameCX671758
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length746
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2179 contig Csv1_Contig2179:107..852. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX671758 vs. ExPASy Swiss-Prot
Match: PSAL_CUCSA (Photosystem I reaction center subunit XI, chloroplastic OS=Cucumis sativus GN=PSAL PE=2 SV=1)

HSP 1 Score: 325.865 bits (834), Expect = 1.465e-88
Identity = 160/209 (76.56%), Postives = 184/209 (88.04%), Query Frame = -3
Query:  118 SQLKSSFTSPVSRSLLTPRGISGSPFRVVPSKRSPRFLVKAIQSEKPTYQVIQPINGDPFIGSLETPITSSPLIAWYLSNLPAYRTAVSPLLRGVEVGLAHGFLLVGPFVKAGPLRNTEIAGPAGSLAAGDLVVILSICLTIYGIASFSEGEPSTAPGLTLTGRKKEPDQLQTADGWAKFTXXXXXXGISGVIWAYFLLYVLNLPYFVK 744
            SQL SSF S  +R+L++P+G+S SP R +P+ R+  F ++AIQ++KPT+QVIQPINGDPFIGSLETP+TSSPLIAWYLSNLPAYRTAVSPLLRG+EVGLAHGF LVGPFVKAGPLRNT  AG AGSLAAG L+VILS+CLT+YG+ASF+EGEPSTAP LTLTGRKK PD LQTADGWAKF+      GISGVIWAYFLLYVL+LPY+VK
Sbjct:   10 SQLSSSFASSNTRALISPKGLSASPLRRIPT-RTHSFTIRAIQADKPTFQVIQPINGDPFIGSLETPVTSSPLIAWYLSNLPAYRTAVSPLLRGIEVGLAHGFFLVGPFVKAGPLRNTAYAGGAGSLAAGGLIVILSVCLTMYGVASFNEGEPSTAPSLTLTGRKKTPDPLQTADGWAKFSGGFFFGGISGVIWAYFLLYVLDLPYYVK 217          
BLAST of CX671758 vs. ExPASy Swiss-Prot
Match: PSAL_ARATH (Photosystem I reaction center subunit XI, chloroplastic OS=Arabidopsis thaliana GN=PSAL PE=1 SV=2)

HSP 1 Score: 322.783 bits (826), Expect = 1.240e-87
Identity = 162/210 (77.14%), Postives = 181/210 (86.19%), Query Frame = -3
Query:  118 SQLKSSFTSP-VSRSLLTPRGISGSPFRVVPSKRSPRFLVKAIQSEKPTYQVIQPINGDPFIGSLETPITSSPLIAWYLSNLPAYRTAVSPLLRGVEVGLAHGFLLVGPFVKAGPLRNTEIAGPAGSLAAGDLVVILSICLTIYGIASFSEGEPSTAPGLTLTGRKKEPDQLQTADGWAKFTXXXXXXGISGVIWAYFLLYVLNLPYFVK 744
            SQL+SSF+S  +S+ L  P+GISG+PF V P+KR   F V+A++S+K T+QV+QPINGDPFIGSLETP+TSSPLIAWYLSNLP YRTAV+PLLRGVEVGLAHGF LVGPFVKAGPLRNT  AG AGSLAA  LVVILS+CLTIYGI+SF EGEPS AP LTLTGRKK+PDQLQTADGWAKFT      GISGV WAYFLLYVL+LPYFVK
Sbjct:   10 SQLRSSFSSASLSQRLAVPKGISGAPFGVSPTKRVSSFTVRAVKSDKTTFQVVQPINGDPFIGSLETPVTSSPLIAWYLSNLPGYRTAVNPLLRGVEVGLAHGFFLVGPFVKAGPLRNTAYAGSAGSLAAAGLVVILSMCLTIYGISSFKEGEPSIAPSLTLTGRKKQPDQLQTADGWAKFTGGFFFGGISGVTWAYFLLYVLDLPYFVK 219          
BLAST of CX671758 vs. ExPASy Swiss-Prot
Match: PSAL_SPIOL (Photosystem I reaction center subunit XI, chloroplastic OS=Spinacia oleracea GN=PSAL PE=1 SV=1)

HSP 1 Score: 311.612 bits (797), Expect = 2.859e-84
Identity = 158/210 (75.24%), Postives = 178/210 (84.76%), Query Frame = -3
Query:  118 SQLKSSFTSPVSRSLLTPRGISGSPFRVVPS-KRSPRFLVKAIQSEKPTYQVIQPINGDPFIGSLETPITSSPLIAWYLSNLPAYRTAVSPLLRGVEVGLAHGFLLVGPFVKAGPLRNTEIAGPAGSLAAGDLVVILSICLTIYGIASFSEGEPSTAPGLTLTGRKKEPDQLQTADGWAKFTXXXXXXGISGVIWAYFLLYVLNLPYFVK 744
            SQLKS FT+   ++L+ P+GISG   R  PS +R   F V+AI++EKPTYQVIQP+NGDPFIG LETP+TSSPLIAWYLSNLPAYRTAV+PLLRGVEVGLAHGFLLVGPFVKAGPLRNTE AG AGSLAA  LVVILS+CLT+YGIASF EGEPS AP LTLTGRKK+PDQLQ+ADGWAKFT      G+SGV WA FL+YVL+LPY+ K
Sbjct:   10 SQLKSGFTT---KALVVPKGISGPALRGFPSPRRHTSFTVRAIKTEKPTYQVIQPLNGDPFIGGLETPVTSSPLIAWYLSNLPAYRTAVNPLLRGVEVGLAHGFLLVGPFVKAGPLRNTEYAGAAGSLAAAGLVVILSMCLTMYGIASFKEGEPSIAPALTLTGRKKQPDQLQSADGWAKFTGGFFFGGVSGVTWACFLMYVLDLPYYFK 216          
BLAST of CX671758 vs. ExPASy Swiss-Prot
Match: PSAL_HORVU (Photosystem I reaction center subunit XI, chloroplastic OS=Hordeum vulgare GN=PSAL PE=1 SV=1)

HSP 1 Score: 288.115 bits (736), Expect = 3.386e-77
Identity = 139/192 (72.40%), Postives = 163/192 (84.90%), Query Frame = -3
Query:  118 PRGISGSPFRVVPSKRSPRFLVKAIQSEKPTYQVIQPINGDPFIGSLETPITSSPLIAWYLSNLPAYRTAVSPLLRGVEVGLAHGFLLVGPFVKAGPLRNTEIAGPAGSLAAGDLVVILSICLTIYGIASFSEGEPSTAPGLTLTGRKKEPDQLQTADGWAKFTXXXXXXGISGVIWAYFLLYVLNLPYFVK 693
            PRG+SG+        R PRF+VKA++S+KPTYQV+QPINGDPFIGSLETP+TSSPL+AWYLSNLPAYRTAVSPLLRG+EVGLAHG+LLVGPF   GPLRNT + G AG+L A  LV ILS+CLT+YG+ASF+EGEPSTAP LTLTGRKKE D+LQTA+GW++FT      G+SG +WAYFLLYVL+LPYF K
Sbjct:   23 PRGMSGASLT-----RRPRFVVKAVKSDKPTYQVVQPINGDPFIGSLETPVTSSPLVAWYLSNLPAYRTAVSPLLRGIEVGLAHGYLLVGPFALTGPLRNTPVHGQAGTLGAIGLVSILSVCLTMYGVASFNEGEPSTAPVLTLTGRKKEADKLQTAEGWSQFTGGFFFGGVSGAVWAYFLLYVLDLPYFFK 209          
BLAST of CX671758 vs. ExPASy Swiss-Prot
Match: PSAL_GUITH (Photosystem I reaction center subunit XI OS=Guillardia theta GN=psaL PE=3 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 1.945e-32
Identity = 69/150 (46.00%), Postives = 94/150 (62.67%), Query Frame = -3
Query:  148 QVIQPINGDPFIGSLETPITSSPLIAWYLSNLPAYRTAVSPLLRGVEVGLAHGFLLVGPFVKAGPLRNTEIAGPAGSLAAGDLVVILSICLTIYGIASFSEGEPSTAPGLTLTGRKKEPDQLQTADGWAKFTXXXXXXGISGVIWAYFLL 597
            Q ++P N DPF+G+L TPIT+S      LSNLPAYR  +SPLLRG+E+G+ HG+ LVGPF K GPLRN+E+A  AG  +A  L++I++ CL IYG+ SF+  +                +QLQ+A GW +FT       I G  +AY L+
Sbjct:    3 QFVKPYNDDPFVGNLATPITTSSFTRTLLSNLPAYRAGLSPLLRGLEIGMTHGYFLVGPFYKLGPLRNSEVALLAGVFSALGLIIIMAACLAIYGVVSFNTNDGG--------------EQLQSAKGWRQFTSGWLVGSIGGASFAYILI 138          
BLAST of CX671758 vs. ExPASy Swiss-Prot
Match: PSAL_PORPU (Photosystem I reaction center subunit XI OS=Porphyra purpurea GN=psaL PE=3 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 4.790e-31
Identity = 69/156 (44.23%), Postives = 97/156 (62.18%), Query Frame = -3
Query:  130 QVIQPINGDPFIGSLETPITSSPLIAWYLSNLPAYRTAVSPLLRGVEVGLAHGFLLVGPFVKAGPLRNTEIAGPAGSLAAGDLVVILSICLTIYGIASFSEGEPSTAPGLTLTGRKKEPDQLQTADGWAKFTXXXXXXGISGVIWAYFLLYVLNLP 597
            + I+P N DPF+G+L TP+++S      L NLPAYR  +SPLLRG+E+G+AHG+ L+GPF K GPLR T++A  AG L++  L++IL+ CL++YG  SF+              R    D LQTA+GW +FT       + G  +AY LL   N+P
Sbjct:    3 EFIKPYNDDPFVGNLSTPVSTSSFSKGLLGNLPAYRRGLSPLLRGLEIGMAHGYFLIGPFDKLGPLRGTDVALLAGFLSSVGLIIILTTCLSMYGNVSFT--------------RSDSKDPLQTAEGWGQFTAGFLVGAVGGSGFAYLLL--ANIP 142          
BLAST of CX671758 vs. ExPASy Swiss-Prot
Match: PSAL_GRATL (Photosystem I reaction center subunit XI OS=Gracilaria tenuistipitata var. liui GN=psaL PE=3 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 4.790e-31
Identity = 69/154 (44.81%), Postives = 97/154 (62.99%), Query Frame = -3
Query:  130 IQPINGDPFIGSLETPITSSPLIAWYLSNLPAYRTAVSPLLRGVEVGLAHGFLLVGPFVKAGPLRNTEIAGPAGSLAAGDLVVILSICLTIYGIASFSEGEPSTAPGLTLTGRKKEPDQLQTADGWAKFTXXXXXXGISGVIWAYFLLYVLNLP 591
            IQ  N DPF+G+L TP+++S      L+NLPAYR  +SPLLRG+E+G+AHG+ LVGPF K GPLRNT++A  +G L+A  L++IL++CL++YG  SF + +                D LQT +GW +FT       + G  +AY LL   N+P
Sbjct:    5 IQSYNNDPFLGNLSTPVSTSTFTKGLLNNLPAYRRGLSPLLRGLEIGMAHGYFLVGPFDKLGPLRNTDVALLSGFLSAVGLIIILTVCLSMYGNVSFDKDDAK--------------DLLQTTEGWGQFTAGFLVGAVGGSGFAYLLL--ANIP 142          
BLAST of CX671758 vs. ExPASy Swiss-Prot
Match: PSAL_THEEB (Photosystem I reaction center subunit XI OS=Thermosynechococcus elongatus (strain BP-1) GN=psaL PE=1 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 8.171e-31
Identity = 61/150 (40.67%), Postives = 97/150 (64.67%), Query Frame = -3
Query:  148 QVIQPINGDPFIGSLETPITSSPLIAWYLSNLPAYRTAVSPLLRGVEVGLAHGFLLVGPFVKAGPLRNTEIAGPAGSLAAGDLVVILSICLTIYGIASFSEGEPSTAPGLTLTGRKKEPDQLQTADGWAKFTXXXXXXGISGVIWAYFLL 597
            ++++P NGDPF+G L TPI+ S L+  ++ NLPAYR  +SP+LRG+EVG+AHG+ L+GP+VK GPLR++++A   G ++   L+++ + CL  YG+ SF +G  S+             D L+T++GW++FT       +     A+FLL
Sbjct:    4 ELVKPYNGDPFVGHLSTPISDSGLVKTFIGNLPAYRQGLSPILRGLEVGMAHGYFLIGPWVKLGPLRDSDVANLGGLISGIALILVATACLAAYGLVSFQKGGSSS-------------DPLKTSEGWSQFTAGFFVGAMGSAFVAFFLL 140          
BLAST of CX671758 vs. ExPASy Swiss-Prot
Match: PSAL_CYACA (Photosystem I reaction center subunit XI OS=Cyanidium caldarium GN=psaL PE=3 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 1.067e-30
Identity = 64/148 (43.24%), Postives = 92/148 (62.16%), Query Frame = -3
Query:  148 IQPINGDPFIGSLETPITSSPLIAWYLSNLPAYRTAVSPLLRGVEVGLAHGFLLVGPFVKAGPLRNTEIAGPAGSLAAGDLVVILSICLTIYGIASFSEGEPSTAPGLTLTGRKKEPDQLQTADGWAKFTXXXXXXGISGVIWAYFLL 591
            I+P   +PF+G+L TP+ SS +  WYL NLP YR  +SPLLRG+E+G+AHG+ ++GPF K GPLRNT+++  +G +AA  L++I SI + IYGI +F   E +              D+LQTA+GW +         + G  +AY LL
Sbjct:    5 IKPYGSNPFVGNLSTPVNSSKVTIWYLKNLPIYRRGLSPLLRGLEIGMAHGYFIIGPFYKLGPLRNTDLSLLSGLIAAIGLIIISSIAMIIYGIVTFDNSENN--------------DKLQTANGWRQLASGFLLGAVGGAGFAYILL 138          
BLAST of CX671758 vs. ExPASy Swiss-Prot
Match: PSAL_SYNEN (Photosystem I reaction center subunit XI OS=Synechococcus elongatus naegeli GN=psaL PE=3 SV=2)

HSP 1 Score: 131.339 bits (329), Expect = 5.296e-30
Identity = 60/150 (40.00%), Postives = 96/150 (64.00%), Query Frame = -3
Query:  148 QVIQPINGDPFIGSLETPITSSPLIAWYLSNLPAYRTAVSPLLRGVEVGLAHGFLLVGPFVKAGPLRNTEIAGPAGSLAAGDLVVILSICLTIYGIASFSEGEPSTAPGLTLTGRKKEPDQLQTADGWAKFTXXXXXXGISGVIWAYFLL 597
            ++++P NGDPF+G L TPI+ S L+  ++ NLPAYR  +SP+L G+EVG+AHG+ L+GP+VK GPLR++++A   G ++   L+++ + CL  YG+ SF +G  S+             D L+T++GW++FT       +     A+FLL
Sbjct:    4 ELVKPYNGDPFVGHLSTPISDSGLVKTFIGNLPAYRQGLSPILPGLEVGMAHGYFLIGPWVKLGPLRDSDVANLGGLISGIALILVATACLAAYGLVSFQKGGSSS-------------DPLKTSEGWSQFTAGFFVGAMGSAFVAFFLL 140          
The following BLAST results are available for this feature:
BLAST of CX671758 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 37
Match NameE-valueIdentityDescription
PSAL_CUCSA1.465e-8876.56Photosystem I reaction center subunit XI, chloropl... [more]
PSAL_ARATH1.240e-8777.14Photosystem I reaction center subunit XI, chloropl... [more]
PSAL_SPIOL2.859e-8475.24Photosystem I reaction center subunit XI, chloropl... [more]
PSAL_HORVU3.386e-7772.40Photosystem I reaction center subunit XI, chloropl... [more]
PSAL_GUITH1.945e-3246.00Photosystem I reaction center subunit XI OS=Guilla... [more]
PSAL_PORPU4.790e-3144.23Photosystem I reaction center subunit XI OS=Porphy... [more]
PSAL_GRATL4.790e-3144.81Photosystem I reaction center subunit XI OS=Gracil... [more]
PSAL_THEEB8.171e-3140.67Photosystem I reaction center subunit XI OS=Thermo... [more]
PSAL_CYACA1.067e-3043.24Photosystem I reaction center subunit XI OS=Cyanid... [more]
PSAL_SYNEN5.296e-3040.00Photosystem I reaction center subunit XI OS=Synech... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS10_13A04_g Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-13A04-A7-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX671758 ID=CX671758; Name=CX671758; organism=Citrus sinensis; type=EST; length=746bp
TTTTTTAACTGAAGCAAGTTTCATTTGCAATAAACATCCCAAACAGGTAG
ATTTACAGAGTAGCAAATTGAGATATATGGGATCTTAAAACCAAAGAGTA
GATGTTACATATTTCTATTTAACGAAGTAGGGAAGGTTAAGAACGTAAAG
CAGGAAATAAGCCCAAATGACACCAGAAATTCCACCAAAGAAGAATCCTC
AAGTGAACTTAGCCCACCCATCAGCTGTTTGCAACTGATCAGGCTCCTTC
TTCCTTCCGGTCAATGTTAAGCCTGGAGCAGTGGATGGCTCTCCTTCACT
GAATGAAGCAATTCCATAGATTGTCAAGCAAATGCTGAGGATCACAACAA
GGTCACCAGCTGCCAATGACCCTGCTGGTCCTGCTATTTCTGTGTTTCTC
AATGGCCCTGCCTTAACAAATGGACCCACAAGGAGGAATCCATGGGCCAA
CCCCACCTCTACTCCTCTCAGTAGTGGGCTGACTGCCGTCCGATAAGCTG
GTAGATTTGAGAGGTACCATGCAATCAATGGACTTGATGTAATTGGAGTC
TCCAAGCTTCCAATGAATGGATCACCATTGATTGGCTGAATAACTTGGTA
AGTTGGCTTTTCAGATTGGATAGCTTTGACAAGGAAACGAGGGCTTCTCT
TGGAGGGAACAACCCTGAATGGAGATCCAGAGATACCCCTTGGAGTAAGC
AGGCTCCTGGAAACTGGTGAAGTAAAGCTACTCTTGAGCTGGCTGG
back to top