CX671740

Overview
NameCX671740
Unique NameCX671740
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length854
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig168 contig Csv1_Contig168:268..1121. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX671740 vs. ExPASy Swiss-Prot
Match: MPPB_ARATH (Probable mitochondrial-processing peptidase subunit beta OS=Arabidopsis thaliana GN=At3g02090 PE=1 SV=2)

HSP 1 Score: 385.956 bits (990), Expect = 1.483e-106
Identity = 188/216 (87.04%), Postives = 204/216 (94.44%), Query Frame = -3
Query:  205 NEPAIFTGSEVRIIDDDIPLAQFAVAFAGASWTDPDSIALMVMQAMLGSWNKNSVGGKHMGSELAQRVGINEIAESMMAFNTNYKDTGLFGVYAVAKPDCLDDLAYAIMYETTKLAYRVSEADVTRARNQLKSSLLLHIDGTSPVAEDIGRQLLTYGRRIPFAELFARIDSVDASTVKRVANRFIYDRDIAIAAMGPIQGLPDYNWFRRRTYWNRY 852
            NEPA FTGSEVR+IDDD+PLAQFAVAF GASWTDPDS+ALMVMQ MLGSWNKN  GGKH+GS+L QRV INEIAES+MAFNTNYKDTGLFGVYAVAK DCLDDL+YAIMYE TKLAYRVS+ADVTRARNQLKSSLLLH+DGTSP+AEDIGRQLLTYGRRIP AELFARID+VDASTVKRVAN++IYD+DIAI+A+GPIQ LPDYN FRRRTYWNRY
Sbjct:  316 NEPASFTGSEVRMIDDDLPLAQFAVAFEGASWTDPDSVALMVMQTMLGSWNKNVGGGKHVGSDLTQRVAINEIAESIMAFNTNYKDTGLFGVYAVAKADCLDDLSYAIMYEVTKLAYRVSDADVTRARNQLKSSLLLHMDGTSPIAEDIGRQLLTYGRRIPTAELFARIDAVDASTVKRVANKYIYDKDIAISAIGPIQDLPDYNKFRRRTYWNRY 531          
BLAST of CX671740 vs. ExPASy Swiss-Prot
Match: MPPB_RAT (Mitochondrial-processing peptidase subunit beta OS=Rattus norvegicus GN=Pmpcb PE=1 SV=3)

HSP 1 Score: 207.608 bits (527), Expect = 7.229e-53
Identity = 99/213 (46.48%), Postives = 142/213 (66.67%), Query Frame = -3
Query:  208 PAIFTGSEVRIIDDDIPLAQFAVAFAGASWTDPDSIALMVMQAMLGSWNKNSVGGKHMGSELAQRVGINEIAESMMAFNTNYKDTGLFGVYAVAKPDCLDDLAYAIMYETTKLAYRVSEADVTRARNQLKSSLLLHIDGTSPVAEDIGRQLLTYGRRIPFAELFARIDSVDASTVKRVANRFIYDRDIAIAAMGPIQGLPDYNWFRRRTYWNR 846
            P  FTGSE+R+ DD +PLA  AVA     WT PD+I LMV   ++G+W+++  GG ++ S+LAQ      +  S  +FNT+Y DTGL+G+Y V +   + D+ +A+  E  +L   VSE++V RA+N LK+++LL +DG++P+ EDIGRQ+L Y RRIP  EL ARID+VDA  V+ V  ++IY +  AIAA+GPI+ LPD+N       W R
Sbjct:  276 PCKFTGSEIRVRDDKMPLAHLAVAIEAVGWTHPDTICLMVANTLIGNWDRSFGGGMNLSSKLAQLTCHGNLCHSFQSFNTSYTDTGLWGLYMVCEQATVADMLHAVQKEWMRLCTAVSESEVARAKNLLKTNMLLQLDGSTPICEDIGRQMLCYNRRIPIPELEARIDAVDAEMVREVCTKYIYGKSPAIAALGPIERLPDFNQICSNMRWTR 488          
BLAST of CX671740 vs. ExPASy Swiss-Prot
Match: MPPB_MOUSE (Mitochondrial-processing peptidase subunit beta OS=Mus musculus GN=Pmpcb PE=2 SV=1)

HSP 1 Score: 205.682 bits (522), Expect = 2.747e-52
Identity = 97/213 (45.54%), Postives = 143/213 (67.14%), Query Frame = -3
Query:  208 PAIFTGSEVRIIDDDIPLAQFAVAFAGASWTDPDSIALMVMQAMLGSWNKNSVGGKHMGSELAQRVGINEIAESMMAFNTNYKDTGLFGVYAVAKPDCLDDLAYAIMYETTKLAYRVSEADVTRARNQLKSSLLLHIDGTSPVAEDIGRQLLTYGRRIPFAELFARIDSVDASTVKRVANRFIYDRDIAIAAMGPIQGLPDYNWFRRRTYWNR 846
            P  FTGSE+R+ DD +PLA  A+A     W  PD+I LMV   ++G+W+++  GG ++ S+LAQ      +  S  +FNT+Y DTGL+G+Y V +   + D+ + +  E  +L   V+E++V RA+N LK+++LL +DG++P+ EDIGRQ+L Y RRIP  EL ARID+VDA TV+RV  ++I+D+  AIAA+GPI+ LPD+N       W R
Sbjct:  276 PCKFTGSEIRVRDDKMPLAHLAIAVEAVGWAHPDTICLMVANTLIGNWDRSFGGGMNLSSKLAQLTCHGNLCHSFQSFNTSYTDTGLWGLYMVCEQATVADMLHVVQNEWKRLCTDVTESEVARAKNLLKTNMLLQLDGSTPICEDIGRQMLCYNRRIPIPELEARIDAVDAETVRRVCTKYIHDKSPAIAALGPIERLPDFNQICSNMRWIR 488          
BLAST of CX671740 vs. ExPASy Swiss-Prot
Match: MPPB_PONAB (Mitochondrial-processing peptidase subunit beta OS=Pongo abelii GN=PMPCB PE=2 SV=1)

HSP 1 Score: 205.297 bits (521), Expect = 3.588e-52
Identity = 96/213 (45.07%), Postives = 142/213 (66.67%), Query Frame = -3
Query:  208 PAIFTGSEVRIIDDDIPLAQFAVAFAGASWTDPDSIALMVMQAMLGSWNKNSVGGKHMGSELAQRVGINEIAESMMAFNTNYKDTGLFGVYAVAKPDCLDDLAYAIMYETTKLAYRVSEADVTRARNQLKSSLLLHIDGTSPVAEDIGRQLLTYGRRIPFAELFARIDSVDASTVKRVANRFIYDRDIAIAAMGPIQGLPDYNWFRRRTYWNR 846
            P  FTGSE+R+ DD +PLA  A+A     W  PD+I LMV   ++G+W+++  GG ++ S+LAQ      +  S  +FNT+Y DTGL+G+Y V +P  + D+ + +  E  +L   V+E++V RARN LK+++LL +DG++P+ EDIGRQ+L Y RRIP  EL ARID+V+A T++ V  ++IY+R  AIAA+GPI+ LPD+        W R
Sbjct:  276 PCKFTGSEIRVRDDKMPLAHLAIAVEAVGWAHPDTICLMVANTLIGNWDRSFGGGMNLSSKLAQLTCHGNLCHSFQSFNTSYTDTGLWGLYMVCEPSTVADMLHVVQKEWMRLCTSVTESEVARARNLLKTNMLLQLDGSTPICEDIGRQMLCYNRRIPIPELEARIDAVNAETIREVCTKYIYNRSPAIAAVGPIEQLPDFKQICSNMCWLR 488          
BLAST of CX671740 vs. ExPASy Swiss-Prot
Match: MPPB_HUMAN (Mitochondrial-processing peptidase subunit beta OS=Homo sapiens GN=PMPCB PE=1 SV=2)

HSP 1 Score: 204.912 bits (520), Expect = 4.686e-52
Identity = 96/213 (45.07%), Postives = 142/213 (66.67%), Query Frame = -3
Query:  208 PAIFTGSEVRIIDDDIPLAQFAVAFAGASWTDPDSIALMVMQAMLGSWNKNSVGGKHMGSELAQRVGINEIAESMMAFNTNYKDTGLFGVYAVAKPDCLDDLAYAIMYETTKLAYRVSEADVTRARNQLKSSLLLHIDGTSPVAEDIGRQLLTYGRRIPFAELFARIDSVDASTVKRVANRFIYDRDIAIAAMGPIQGLPDYNWFRRRTYWNR 846
            P  FTGSE+R+ DD +PLA  A+A     W  PD+I LMV   ++G+W+++  GG ++ S+LAQ      +  S  +FNT+Y DTGL+G+Y V +   + D+ + +  E  +L   V+E++V RARN LK+++LL +DG++P+ EDIGRQ+L Y RRIP  EL ARID+V+A T++ V  ++IY+R  AIAA+GPI+ LPD+   R    W R
Sbjct:  276 PCKFTGSEIRVRDDKMPLAHLAIAVEAVGWAHPDTICLMVANTLIGNWDRSFGGGMNLSSKLAQLTCHGNLCHSFQSFNTSYTDTGLWGLYMVCESSTVADMLHVVQKEWMRLCTSVTESEVARARNLLKTNMLLQLDGSTPICEDIGRQMLCYNRRIPIPELEARIDAVNAETIREVCTKYIYNRSPAIAAVGPIKQLPDFKQIRSNMCWLR 488          
BLAST of CX671740 vs. ExPASy Swiss-Prot
Match: MPPB_BOVIN (Mitochondrial-processing peptidase subunit beta OS=Bos taurus GN=PMPCB PE=2 SV=1)

HSP 1 Score: 204.142 bits (518), Expect = 7.993e-52
Identity = 94/211 (44.55%), Postives = 141/211 (66.82%), Query Frame = -3
Query:  214 PAIFTGSEVRIIDDDIPLAQFAVAFAGASWTDPDSIALMVMQAMLGSWNKNSVGGKHMGSELAQRVGINEIAESMMAFNTNYKDTGLFGVYAVAKPDCLDDLAYAIMYETTKLAYRVSEADVTRARNQLKSSLLLHIDGTSPVAEDIGRQLLTYGRRIPFAELFARIDSVDASTVKRVANRFIYDRDIAIAAMGPIQGLPDYNWFRRRTYW 846
            P  FTGSE+R+ DD +PLA  AVA     W  PD+I LMV   ++G+W+++  GG ++ S+LAQ      +  S  +FNT+Y DTGL+G+Y V +P  + D+ + +  E  +L   V+E++V RA+N LK+++LL +DG++P+ EDIGRQ+L Y RRIP  EL ARID+V+A  ++ V  ++IYD+  A+AA+GPI+ LPD+N       W
Sbjct:  277 PCKFTGSEIRVRDDKMPLAHLAVAVEAVGWAHPDTICLMVANTLIGNWDRSFGGGMNLSSKLAQLTCHGNLCHSFQSFNTSYTDTGLWGIYMVCEPATVADMLHVVQKEWMRLCTSVTESEVARAKNLLKTNMLLQLDGSTPICEDIGRQMLCYNRRIPIPELEARIDAVNAEIIREVCTKYIYDKSPAVAAVGPIEQLPDFNQICSNMRW 487          
BLAST of CX671740 vs. ExPASy Swiss-Prot
Match: MPPB_BLAEM (Mitochondrial-processing peptidase subunit beta OS=Blastocladiella emersonii GN=MPP1 PE=3 SV=1)

HSP 1 Score: 197.978 bits (502), Expect = 5.728e-50
Identity = 108/212 (50.94%), Postives = 142/212 (66.98%), Query Frame = -3
Query:  205 FTGSEVRIIDDDIPLAQFAVAFAGASWTDPDSIALMVMQAMLGSWNKNSVGGKHMGSELAQRVGINEIAESMMAFNTNYKDTGLFGVYAVAKP-DCLDDLAYAIMYETTKLAYRVSEADVTRARNQLKSSLLLHIDGTSPVAEDIGRQLLTYGRRIPFAELFARIDSVDASTVKRVANRFIYDRDIAIAAMGPIQGLPDYNWFRRRTYWNRY 837
            FTGS+VRI  DD+P A  A+A  GASWT  D   L+V  AM+GS+++ + G  H  S+LAQ V  + +A S  +FNT Y DTGL+G+Y  +   D LDDLA+  + E  +LA   SE +V  A+ QLK+SLLL +DGT+PVAE+IGRQ+L YGRR+   E+   +D+V    VKRVAN FIYDRD+AI A+GP++ LPDYN  R      RY
Sbjct:  255 FTGSDVRIRVDDMPTAHIALAVEGASWTSADHWPLLVASAMIGSYDR-AAGNAHPSSKLAQIVAKHNLANSFTSFNTTYSDTGLWGIYIQSNNRDNLDDLAHFTVREWMRLATAPSEGEVAIAKQQLKTSLLLALDGTTPVAEEIGRQMLAYGRRLSPFEIDRLVDAVTVEDVKRVANEFIYDRDLAIVAVGPVECLPDYNRIRSAMNLLRY 465          
BLAST of CX671740 vs. ExPASy Swiss-Prot
Match: QCR1_MOUSE (Cytochrome b-c1 complex subunit 1, mitochondrial OS=Mus musculus GN=Uqcrc1 PE=1 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 3.143e-48
Identity = 91/214 (42.52%), Postives = 135/214 (63.08%), Query Frame = -3
Query:  205 PAIFTGSEVRIIDDDIPLAQFAVAFAGASWTDPDSIALMVMQAMLGSWNKNSVGGKHMGSELAQRVGINEIAESMMAFNTNYKDTGLFGVYAVAKPDCLDDLAYAIMYETTKLAYRVSEADVTRARNQLKSSLLLHIDGTSPVAEDIGRQLLTYGRRIPFAELFARIDSVDASTVKRVANRFIYDRDIAIAAMGPIQGLPDYNWFRRRTYWNRY 846
            P  FTGSE+R  DD +PLA  A+A  G  W +PD++ L V  A++G ++    GG H+ S LA     N++ +S   FN +Y DTGL G + V     +DD+ + +  +  +L    +E++VTR +N L+++L+ H+DGT+PV EDIGR LLTYGRRIP AE  +RI  VDA  ++ + +++ YD+  A+A  GPI+ LPDYN  R   +W R+
Sbjct:  267 PCRFTGSEIRHRDDALPLAHVAIAVEGPGWANPDNVTLQVANAIIGHYDCTCGGGVHLSSPLASVAVANKLCQSFQTFNISYSDTGLLGAHFVCDAMSIDDMVFFLQGQWMRLCTSATESEVTRGKNILRNALVSHLDGTTPVCEDIGRSLLTYGRRIPLAEWESRIQEVDAQMLRDICSKYFYDQCPAVAGYGPIEQLPDYNRIRSGMFWLRF 480          
BLAST of CX671740 vs. ExPASy Swiss-Prot
Match: QCR1_RAT (Cytochrome b-c1 complex subunit 1, mitochondrial OS=Rattus norvegicus GN=Uqcrc1 PE=1 SV=1)

HSP 1 Score: 191.815 bits (486), Expect = 4.105e-48
Identity = 92/214 (42.99%), Postives = 136/214 (63.55%), Query Frame = -3
Query:  205 PAIFTGSEVRIIDDDIPLAQFAVAFAGASWTDPDSIALMVMQAMLGSWNKNSVGGKHMGSELAQRVGINEIAESMMAFNTNYKDTGLFGVYAVAKPDCLDDLAYAIMYETTKLAYRVSEADVTRARNQLKSSLLLHIDGTSPVAEDIGRQLLTYGRRIPFAELFARIDSVDASTVKRVANRFIYDRDIAIAAMGPIQGLPDYNWFRRRTYWNRY 846
            P  FTGSE+R  DD +PLA  A+A  G  W +PD++AL V  A++G ++    GG H+ S LA     N++ +S   FN +Y +TGL G + V     +DD+ + +  +  +L    +E++VTR +N L+++L+ H+DGT+PV EDIGR LLTYGRRIP AE  +RI+ VDA  V+ V +++ YD+  A+A  GPI+ L DYN  R   +W R+
Sbjct:  267 PCRFTGSEIRHRDDALPLAHVAIAVEGPGWANPDNVALQVANAIIGHYDCTYGGGVHLSSPLASVAVANKLCQSFQTFNISYSETGLLGAHFVCDAMSIDDMIFFLQGQWMRLCTSATESEVTRGKNILRNALISHLDGTTPVCEDIGRSLLTYGRRIPLAEWESRIEEVDAQMVREVCSKYFYDQCPAVAGYGPIEQLSDYNRIRSGMFWLRF 480          
BLAST of CX671740 vs. ExPASy Swiss-Prot
Match: QCR1_HUMAN (Cytochrome b-c1 complex subunit 1, mitochondrial OS=Homo sapiens GN=UQCRC1 PE=1 SV=3)

HSP 1 Score: 188.348 bits (477), Expect = 4.539e-47
Identity = 91/214 (42.52%), Postives = 134/214 (62.62%), Query Frame = -3
Query:  205 PAIFTGSEVRIIDDDIPLAQFAVAFAGASWTDPDSIALMVMQAMLGSWNKNSVGGKHMGSELAQRVGINEIAESMMAFNTNYKDTGLFGVYAVAKPDCLDDLAYAIMYETTKLAYRVSEADVTRARNQLKSSLLLHIDGTSPVAEDIGRQLLTYGRRIPFAELFARIDSVDASTVKRVANRFIYDRDIAIAAMGPIQGLPDYNWFRRRTYWNRY 846
            P  FTGSE+R  DD +P A  A+A  G  W  PD++AL V  A++G ++    GG H+ S LA     N++ +S   F+  Y +TGL G + V     +DD+ + +  +  +L    +E++V R +N L+++L+ H+DGT+PV EDIGR LLTYGRRIP AE  +RI  VDAS V+ + +++IYD+  A+A  GPI+ LPDYN  R   +W R+
Sbjct:  267 PCRFTGSEIRHRDDALPFAHVAIAVEGPGWASPDNVALQVANAIIGHYDCTYGGGVHLSSPLASGAVANKLCQSFQTFSICYAETGLLGAHFVCDRMKIDDMMFVLQGQWMRLCTSATESEVARGKNILRNALVSHLDGTTPVCEDIGRSLLTYGRRIPLAEWESRIAEVDASVVREICSKYIYDQCPAVAGYGPIEQLPDYNRIRSGMFWLRF 480          
The following BLAST results are available for this feature:
BLAST of CX671740 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 37
Match NameE-valueIdentityDescription
MPPB_ARATH1.483e-10687.04Probable mitochondrial-processing peptidase subuni... [more]
MPPB_RAT7.229e-5346.48Mitochondrial-processing peptidase subunit beta OS... [more]
MPPB_MOUSE2.747e-5245.54Mitochondrial-processing peptidase subunit beta OS... [more]
MPPB_PONAB3.588e-5245.07Mitochondrial-processing peptidase subunit beta OS... [more]
MPPB_HUMAN4.686e-5245.07Mitochondrial-processing peptidase subunit beta OS... [more]
MPPB_BOVIN7.993e-5244.55Mitochondrial-processing peptidase subunit beta OS... [more]
MPPB_BLAEM5.728e-5050.94Mitochondrial-processing peptidase subunit beta OS... [more]
QCR1_MOUSE3.143e-4842.52Cytochrome b-c1 complex subunit 1, mitochondrial O... [more]
QCR1_RAT4.105e-4842.99Cytochrome b-c1 complex subunit 1, mitochondrial O... [more]
QCR1_HUMAN4.539e-4742.52Cytochrome b-c1 complex subunit 1, mitochondrial O... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS10_12H04_b Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-12H04-P8-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX671740 ID=CX671740; Name=CX671740; organism=Citrus sinensis; type=EST; length=854bp
TTTTGAAGAGTGAAGACAGCTTACTTATTTCCTGAACAAATTATGAAGTT
ACAGAAGCAAGAGCTAGAAAAGAATTCAATAAAATACCATAGCCCTGAAG
CCTCTCCCAAGGGCATTGATTGTGTAAATTGCAACCCAAAAATTGTTTGA
AATCTCCGCCCAGGAAGGCGGGGATGCAGTAATGAACAACCATGAGATAA
CTTAGTATCTATTCCAGTAGGTTCTGCGTCTGAACCAGTTGTAGTCGGGT
AAACCTTGAATTGGACCCATTGCAGCAATTGCGATATCCCTGTCGTAAAT
AAATCTGTTTGCAACGCGCTTGACAGTGCTTGCATCTACGGAGTCTATCC
TAGCAAACAATTCAGCAAATGGGATTCTTCGACCATATGTAAGCAGCTGG
CGTCCAATATCTTCAGCTACAGGGCTTGTTCCATCAATGTGAAGCAACAG
GGATGATTTCAACTGATTACGGGCACGAGTGACATCAGCTTCTGAAACCC
GATAAGCTAACTTGGTAGTCTCGTACATAATTGCATAGGCCAAATCATCT
AAGCAATCCGGCTTAGCAACAGCATAAACACCAAACAGACCAGTGTCTTT
GTAGTTCGTGTTGAAGGCCATCATGCTTTCTGCAATTTCATTAATGCCAA
CTCTCTGTGCCAGCTCGGAACCCATGTGCTTTCCACCCACTGAATTTTTA
TTCCATGAACCCAACATTGCCTGCATAACCATCAGGGCAATTGAATCTGG
ATCTGTCCAAGATGCTCCAGCGAAAGCAACCGCAAATTGTGCCAAAGGAA
TATCGTCATCAATTATTCTAACCTCAGAACCAGTGAAAATTGCTGGTTCA
TTTG
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