CX671707

Overview
NameCX671707
Unique NameCX671707
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length914
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX671707_ssr749 microsatellite CX671707_ssr749:749..760. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig5088 contig Csv1_Contig5088:1..914. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX671707 vs. ExPASy Swiss-Prot
Match: HDA19_ARATH (Histone deacetylase 19 OS=Arabidopsis thaliana GN=HDA19 PE=1 SV=2)

HSP 1 Score: 400.979 bits (1029), Expect = 4.986e-111
Identity = 187/235 (79.57%), Postives = 214/235 (91.06%), Query Frame = -2
Query:  209 VMEVFRPGAVVLQCGADSLSGDRLGCFNLSIKGHAECVKFMRSFNVPLLLLGGGGYTIRNVARCWCYETGVALGVEVDDKMPQHEYYEYFGPDYTLHVAPSNMENKNSRQLLEEIRNKLLEYLSKLQHAPSVQFQERPPDSELPEADEDQEDGDERWDPDSDMDVDDERKSLPNRVKREAVEPEQKDREGLKGMAEQARGFDMIADDSISTKVLDMSSMPIDEPSIKVEQENMSK 913
            VME+FRPGAVVLQCGADSLSGDRLGCFNLSIKGHAECVKFMRSFNVPLLLLGGGGYTIRNVARCWCYETGVALGVEV+DKMP+HEYYEYFGPDYTLHVAPSNMENKNSRQ+LEEIRN LL  LSKLQHAPSV FQERPPD+E PE DEDQEDGD+RWDPDSDMDVDD+RK +P+RVKREAVEP+ KD++GLKG+ E+ +G ++  D+S STKV  ++ + ++E S+K+E+E  +K
Sbjct:  256 VMEIFRPGAVVLQCGADSLSGDRLGCFNLSIKGHAECVKFMRSFNVPLLLLGGGGYTIRNVARCWCYETGVALGVEVEDKMPEHEYYEYFGPDYTLHVAPSNMENKNSRQMLEEIRNDLLHNLSKLQHAPSVPFQERPPDTETPEVDEDQEDGDKRWDPDSDMDVDDDRKPIPSRVKREAVEPDTKDKDGLKGIMERGKGCEVEVDESGSTKVTGVNPVGVEEASVKMEEEGTNK 490          
BLAST of CX671707 vs. ExPASy Swiss-Prot
Match: HDA19_MAIZE (Probable histone deacetylase 19 OS=Zea mays PE=2 SV=1)

HSP 1 Score: 318.161 bits (814), Expect = 4.250e-86
Identity = 167/247 (67.61%), Postives = 196/247 (79.35%), Query Frame = -2
Query:  209 VMEVFRPGAVVLQCGADSLSGDRLGCFNLSIKGHAECVKFMRSFNVPLLLLGGGGYTIRNVARCWCYETGVALGVEVDDKMPQHEYYEYFGPDYTLHVAPSNMENKNSRQLLEEIRNKLLEYLSKLQHAPSVQFQERPPDSELPEADEDQEDGDERWDPDSDMDVDD--------ERKSLPNRVKREAVEPEQKDREGLKGMAEQARGFDMIADDSISTK---VLDMSSMPIDEPS-IKVEQENMSK 913
            VMEVFRPGAVVLQCGADSLSGDRLGCFNLSIKGHAECV++MRSFNVPLLLLGGGGYTIRNVARCWCYETGVALG E +DKMP +EYYEYFGPDYTLHVAPSNMENKN+RQ L++IR+K    LSKL+HAPSV FQER PD+E+PE DEDQ+D DER DPDSDM+VDD         R  L  ++KRE  E   + ++G + +A + RG + +A+D  S+K     D S+M IDEPS +K E E+ +K
Sbjct:  261 VMEVFRPGAVVLQCGADSLSGDRLGCFNLSIKGHAECVRYMRSFNVPLLLLGGGGYTIRNVARCWCYETGVALGQEPEDKMPVNEYYEYFGPDYTLHVAPSNMENKNTRQQLDDIRSK----LSKLRHAPSVHFQERVPDTEIPEQDEDQDDPDERHDPDSDMEVDDHKAVEESSRRSILGIKIKREFGENATRVQDGGR-VASEHRGLEPMAEDIGSSKQAPQADASAMAIDEPSNVKNEPESSTK 502          
BLAST of CX671707 vs. ExPASy Swiss-Prot
Match: HDA6_ARATH (Histone deacetylase 6 OS=Arabidopsis thaliana GN=HDA6 PE=1 SV=1)

HSP 1 Score: 234.958 bits (598), Expect = 4.732e-61
Identity = 115/177 (64.97%), Postives = 140/177 (79.10%), Query Frame = -2
Query:  410 VMEVFRPGAVVLQCGADSLSGDRLGCFNLSIKGHAECVKFMRSFNVPLLLLGGGGYTIRNVARCWCYETGVALGVEVDDKMPQHEYYEYFGPDYTLHVAPSNMENKNSRQLLEEIRNKLLEYLSKLQHAPSVQFQERPPDSELPEADEDQEDGDERWDP---------DSDMDVDDE 913
            VMEV++P AVVLQCGADSLSGDRLGCFNLS+KGHA+C++F+RS+NVPL++LGGGGYTIRNVARCWCYET VA+GVE D+K+P +EY+EYFGPDYTLHV PS MEN N+ + +E IRN LLE LS L HAPSVQFQ  PP + +   DE ++D + R  P         +SD D DD+
Sbjct:  260 VMEVYQPEAVVLQCGADSLSGDRLGCFNLSVKGHADCLRFLRSYNVPLMVLGGGGYTIRNVARCWCYETAVAVGVEPDNKLPYNEYFEYFGPDYTLHVDPSPMENLNTPKDMERIRNTLLEQLSGLIHAPSVQFQHTPPVNRV--LDEPEDDMETRPKPRIWSGTATYESDSDDDDK 434          
BLAST of CX671707 vs. ExPASy Swiss-Prot
Match: HDAC1_RAT (Histone deacetylase 1 OS=Rattus norvegicus GN=Hdac1 PE=2 SV=1)

HSP 1 Score: 224.942 bits (572), Expect = 4.897e-58
Identity = 114/218 (52.29%), Postives = 154/218 (70.64%), Query Frame = -2
Query:  317 VMEVFRPGAVVLQCGADSLSGDRLGCFNLSIKGHAECVKFMRSFNVPLLLLGGGGYTIRNVARCWCYETGVALGVEVDDKMPQHEYYEYFGPDYTLHVAPSNMENKNSRQLLEEIRNKLLEYLSKLQHAPSVQFQERPPDSELPE--ADEDQEDGDERWD--------------PDSDMDVDDERKSLPNRVKREAVEPE---QKDREGLKGMAEQAR 913
            VME+F+P AVVLQCG+DSLSGDRLGCFNL+IKGHA+CV+F++SFN+P+L+LGGGGYTIRNVARCW YET VAL  E+ +++P ++Y+EYFGPD+ LH++PSNM N+N+ + LE+I+ +L E L  L HAP VQ Q  P D+ +PE   DED+ED D+R                 DSD + +  RK+  N  K + V+ E   +KD E  K + E+ +
Sbjct:  248 VMEMFQPSAVVLQCGSDSLSGDRLGCFNLTIKGHAKCVEFVKSFNLPMLMLGGGGYTIRNVARCWTYETAVALDTEIPNELPYNDYFEYFGPDFKLHISPSNMTNQNTNEYLEKIKQRLFENLRMLPHAPGVQMQAIPEDA-IPEESGDEDEEDPDKRISICSSDKRIACEEEFSDSDEEGEGGRKNSSNFKKAKRVKTEDEKEKDPEEKKEVTEEEK 464          
BLAST of CX671707 vs. ExPASy Swiss-Prot
Match: HDAC1_MOUSE (Histone deacetylase 1 OS=Mus musculus GN=Hdac1 PE=1 SV=1)

HSP 1 Score: 224.942 bits (572), Expect = 4.897e-58
Identity = 114/218 (52.29%), Postives = 154/218 (70.64%), Query Frame = -2
Query:  317 VMEVFRPGAVVLQCGADSLSGDRLGCFNLSIKGHAECVKFMRSFNVPLLLLGGGGYTIRNVARCWCYETGVALGVEVDDKMPQHEYYEYFGPDYTLHVAPSNMENKNSRQLLEEIRNKLLEYLSKLQHAPSVQFQERPPDSELPE--ADEDQEDGDERWD--------------PDSDMDVDDERKSLPNRVKREAVEPE---QKDREGLKGMAEQAR 913
            VME+F+P AVVLQCG+DSLSGDRLGCFNL+IKGHA+CV+F++SFN+P+L+LGGGGYTIRNVARCW YET VAL  E+ +++P ++Y+EYFGPD+ LH++PSNM N+N+ + LE+I+ +L E L  L HAP VQ Q  P D+ +PE   DED+ED D+R                 DSD + +  RK+  N  K + V+ E   +KD E  K + E+ +
Sbjct:  248 VMEMFQPSAVVLQCGSDSLSGDRLGCFNLTIKGHAKCVEFVKSFNLPMLMLGGGGYTIRNVARCWTYETAVALDTEIPNELPYNDYFEYFGPDFKLHISPSNMTNQNTNEYLEKIKQRLFENLRMLPHAPGVQMQAIPEDA-IPEESGDEDEEDPDKRISICSSDKRIACEEEFSDSDEEGEGGRKNSSNFKKAKRVKTEDEKEKDPEEKKEVTEEEK 464          
BLAST of CX671707 vs. ExPASy Swiss-Prot
Match: HDAC1_BOVIN (Histone deacetylase 1 OS=Bos taurus GN=HDAC1 PE=2 SV=1)

HSP 1 Score: 224.942 bits (572), Expect = 4.897e-58
Identity = 114/218 (52.29%), Postives = 154/218 (70.64%), Query Frame = -2
Query:  317 VMEVFRPGAVVLQCGADSLSGDRLGCFNLSIKGHAECVKFMRSFNVPLLLLGGGGYTIRNVARCWCYETGVALGVEVDDKMPQHEYYEYFGPDYTLHVAPSNMENKNSRQLLEEIRNKLLEYLSKLQHAPSVQFQERPPDSELPE--ADEDQEDGDERWD--------------PDSDMDVDDERKSLPNRVKREAVEPE---QKDREGLKGMAEQAR 913
            VME+F+P AVVLQCG+DSLSGDRLGCFNL+IKGHA+CV+F++SFN+P+L+LGGGGYTIRNVARCW YET VAL  E+ +++P ++Y+EYFGPD+ LH++PSNM N+N+ + LE+I+ +L E L  L HAP VQ Q  P D+ +PE   DED+ED D+R                 DSD + +  RK+  N  K + V+ E   +KD E  K + E+ +
Sbjct:  248 VMEMFQPSAVVLQCGSDSLSGDRLGCFNLTIKGHAKCVEFVKSFNLPMLMLGGGGYTIRNVARCWTYETAVALDTEIPNELPYNDYFEYFGPDFKLHISPSNMTNQNTNEYLEKIKQRLFENLRMLPHAPGVQMQAIPEDA-IPEESGDEDEEDPDKRISICSSDKRIACEEEFSDSDEEGEGGRKNSSNFKKAKRVKTEDEKEKDPEEKKEVTEEEK 464          
BLAST of CX671707 vs. ExPASy Swiss-Prot
Match: HDA1B_XENLA (Probable histone deacetylase 1-B OS=Xenopus laevis GN=hdac1-B PE=1 SV=1)

HSP 1 Score: 223.402 bits (568), Expect = 1.425e-57
Identity = 114/223 (51.12%), Postives = 157/223 (70.40%), Query Frame = -2
Query:  296 VMEVFRPGAVVLQCGADSLSGDRLGCFNLSIKGHAECVKFMRSFNVPLLLLGGGGYTIRNVARCWCYETGVALGVEVDDKMPQHEYYEYFGPDYTLHVAPSNMENKNSRQLLEEIRNKLLEYLSKLQHAPSVQFQERPPDSELPEA-DEDQEDGDERWD--------------PDSDMDVDDERKSLPN--RVKREAVEPEQKDREGLKGMAEQARGFDMIAD 913
            VME+F+P AVVLQCGADSLSGDRLGCFNL+IKGHA+CV+F+++FN+P+L+LGGGGYTIRNVARCW YET VAL  E+ +++P ++Y+EYFGPD+ LH++PSNM N+N+ + LE+I+ +L E L  L HAP VQ Q  P DS   ++ +ED+ED D+R                 DS+ + +  RK++ N  +VKR   E E+K+ E  K + E+ +  D   D
Sbjct:  248 VMEMFQPSAVVLQCGADSLSGDRLGCFNLTIKGHAKCVEFIKTFNLPMLMLGGGGYTIRNVARCWTYETAVALDSEIPNELPYNDYFEYFGPDFKLHISPSNMTNQNTNEYLEKIKQRLFENLRMLPHAPGVQMQAIPEDSVHDDSGEEDEEDPDKRISIRSSDKRIACDEEFSDSEDEGEGGRKNVANFKKVKRVKTE-EEKEGEDKKDVKEEEKAKDEKTD 469          
BLAST of CX671707 vs. ExPASy Swiss-Prot
Match: HDAC1_PONAB (Histone deacetylase 1 OS=Pongo abelii GN=HDAC1 PE=2 SV=1)

HSP 1 Score: 222.246 bits (565), Expect = 3.174e-57
Identity = 112/218 (51.38%), Postives = 154/218 (70.64%), Query Frame = -2
Query:  317 VMEVFRPGAVVLQCGADSLSGDRLGCFNLSIKGHAECVKFMRSFNVPLLLLGGGGYTIRNVARCWCYETGVALGVEVDDKMPQHEYYEYFGPDYTLHVAPSNMENKNSRQLLEEIRNKLLEYLSKLQHAPSVQFQERPPDSELPE--ADEDQEDGDERWD--------------PDSDMDVDDERKSLPNRVKREAVEPE---QKDREGLKGMAEQAR 913
            VME+F+P AVVLQCG+DSLSGDRLGCFNL+IKGHA+CV+F++SFN+P+L+LGGGGYTIRNVARCW YET VAL  E+ +++P ++Y+EYFGPD+ LH++PSNM N+N+ + LE+I+ +L E L  L HAP VQ Q  P D+ +PE   DED++D D+R                 DS+ + +  RK+  N  K + V+ E   +KD E  K + E+ +
Sbjct:  248 VMEMFQPSAVVLQCGSDSLSGDRLGCFNLTIKGHAKCVEFVKSFNLPMLMLGGGGYTIRNVARCWTYETAVALDTEIPNELPYNDYFEYFGPDFKLHISPSNMTNQNTNEYLEKIKQRLFENLRMLPHAPGVQMQAIPEDA-IPEESGDEDEDDPDKRISICSSDKRIACEEEFSDSEEEGEGGRKNSSNFKKAKRVKTEDEKEKDPEEKKEVTEEEK 464          
BLAST of CX671707 vs. ExPASy Swiss-Prot
Match: HDAC1_HUMAN (Histone deacetylase 1 OS=Homo sapiens GN=HDAC1 PE=1 SV=1)

HSP 1 Score: 222.246 bits (565), Expect = 3.174e-57
Identity = 112/218 (51.38%), Postives = 154/218 (70.64%), Query Frame = -2
Query:  317 VMEVFRPGAVVLQCGADSLSGDRLGCFNLSIKGHAECVKFMRSFNVPLLLLGGGGYTIRNVARCWCYETGVALGVEVDDKMPQHEYYEYFGPDYTLHVAPSNMENKNSRQLLEEIRNKLLEYLSKLQHAPSVQFQERPPDSELPE--ADEDQEDGDERWD--------------PDSDMDVDDERKSLPNRVKREAVEPE---QKDREGLKGMAEQAR 913
            VME+F+P AVVLQCG+DSLSGDRLGCFNL+IKGHA+CV+F++SFN+P+L+LGGGGYTIRNVARCW YET VAL  E+ +++P ++Y+EYFGPD+ LH++PSNM N+N+ + LE+I+ +L E L  L HAP VQ Q  P D+ +PE   DED++D D+R                 DS+ + +  RK+  N  K + V+ E   +KD E  K + E+ +
Sbjct:  248 VMEMFQPSAVVLQCGSDSLSGDRLGCFNLTIKGHAKCVEFVKSFNLPMLMLGGGGYTIRNVARCWTYETAVALDTEIPNELPYNDYFEYFGPDFKLHISPSNMTNQNTNEYLEKIKQRLFENLRMLPHAPGVQMQAIPEDA-IPEESGDEDEDDPDKRISICSSDKRIACEEEFSDSEEEGEGGRKNSSNFKKAKRVKTEDEKEKDPEEKKEVTEEEK 464          
BLAST of CX671707 vs. ExPASy Swiss-Prot
Match: HDA1A_XENLA (Probable histone deacetylase 1-A OS=Xenopus laevis GN=hdac1-A PE=1 SV=1)

HSP 1 Score: 219.55 bits (558), Expect = 2.057e-56
Identity = 113/223 (50.67%), Postives = 156/223 (69.96%), Query Frame = -2
Query:  296 VMEVFRPGAVVLQCGADSLSGDRLGCFNLSIKGHAECVKFMRSFNVPLLLLGGGGYTIRNVARCWCYETGVALGVEVDDKMPQHEYYEYFGPDYTLHVAPSNMENKNSRQLLEEIRNKLLEYLSKLQHAPSVQFQERPPDSELPEA-DEDQEDGDERWD--------------PDSDMDVDDERKSLPN--RVKREAVEPEQKDREGLKGMAEQARGFDMIAD 913
            VME+F+P AVVLQCGADSLSGDRLGCFNL+IKGHA+CV+F+++FN+PLL+LGGGGYTIRNVARCW YET VAL  E+ +++P ++Y+EYFGPD+ LH++PSNM N+N+ + LE+I+ +L E L  L HAP VQ Q    DS   ++ +ED++D D+R                 DS+ + +  RK++ N  +VKR   E E+K+ E  K + E+ +  D   D
Sbjct:  248 VMEMFQPSAVVLQCGADSLSGDRLGCFNLTIKGHAKCVEFIKTFNLPLLMLGGGGYTIRNVARCWTYETAVALDSEIPNELPYNDYFEYFGPDFKLHISPSNMTNQNTNEYLEKIKQRLFENLRMLPHAPGVQMQAVAEDSIHDDSGEEDEDDPDKRISIRSSDKRIACDEEFSDSEDEGEGGRKNVANFKKVKRVKTE-EEKEGEDKKDVKEEEKAKDEKTD 469          
The following BLAST results are available for this feature:
BLAST of CX671707 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 44
Match NameE-valueIdentityDescription
HDA19_ARATH4.986e-11179.57Histone deacetylase 19 OS=Arabidopsis thaliana GN=... [more]
HDA19_MAIZE4.250e-8667.61Probable histone deacetylase 19 OS=Zea mays PE=2 S... [more]
HDA6_ARATH4.732e-6164.97Histone deacetylase 6 OS=Arabidopsis thaliana GN=H... [more]
HDAC1_RAT4.897e-5852.29Histone deacetylase 1 OS=Rattus norvegicus GN=Hdac... [more]
HDAC1_MOUSE4.897e-5852.29Histone deacetylase 1 OS=Mus musculus GN=Hdac1 PE=... [more]
HDAC1_BOVIN4.897e-5852.29Histone deacetylase 1 OS=Bos taurus GN=HDAC1 PE=2 ... [more]
HDA1B_XENLA1.425e-5751.12Probable histone deacetylase 1-B OS=Xenopus laevis... [more]
HDAC1_PONAB3.174e-5751.38Histone deacetylase 1 OS=Pongo abelii GN=HDAC1 PE=... [more]
HDAC1_HUMAN3.174e-5751.38Histone deacetylase 1 OS=Homo sapiens GN=HDAC1 PE=... [more]
HDA1A_XENLA2.057e-5650.67Probable histone deacetylase 1-A OS=Xenopus laevis... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS10_12F10_b Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-12F10-L20-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX671707 ID=CX671707; Name=CX671707; organism=Citrus sinensis; type=EST; length=914bp
TTTTTTTATCAAAGAAAATAAGTTTGACATTTTGCTAAGACAGAAGTTTT
ATACTTCAATACATTAGACTGATTGGAGAAATATAACTTGGAAAGCGATG
TTTGGAACAACCAATCAGGTTTTCATGTCTAAAACACATAATTCGTATAG
CAGATGTCGATGCTGAGATAAAGTTTAGTTACGAATGCGGGTACATGTGA
TCAGATGCCTTGCTCATGTTTTCTTGTTCAACTTTGATGCTCGGTTCATC
AATTGGCATTGAACTCATATCTAAAACCTTTGTGCTTATAGAATCGTCTG
CAATCATGTCGAAGCCTCTAGCTTGCTCGGCCATTCCTTTAAGGCCCTCC
CGATCTTTTTGCTCAGGTTCAACTGCTTCTCTCTTAACTCTGTTTGGTAG
GGACTTTCGTTCATCATCAACATCCATGTCAGAATCTGGATCCCATCTCT
CATCGCCATCCTCCTGATCTTCATCCGCCTCTGGAAGTTCAGAATCAGGT
GGTCTTTCCTGAAACTGGACACTGGGTGCATGTTGAAGCTTTGAGAGATA
TTCGAGAAGCTTATTCCTTATTTCCTCAAGCAACTGGCGCGAATTCTTAT
TCTCCATGTTACTGGGAGCAACATGAAGAGTATAGTCAGGACCAAAATAC
TCATAATACTCATGCTGTGGCATCTTGTCATCAACCTCTACTCCAAGTGC
AACTCCTGTCTCGTAGCACCAGCAACGAGCAACATTCCGAATAGTGTAAC
CACCACCACCCAGCAGCAACAGAGGCACATTGAATGATCTCATAAATTTG
ACACATTCTGCATGACCTTTAATTGAAAGATTGAAGCATCCTAACCTATC
CCCAGACAATGAGTCAGCACCACATTGGAGGACCACAGCACCAGGTCTAA
AAACTTCCATCACT
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