CX671696 | Citrus Genome Database

Overview


Name	CX671696
Unique Name	CX671696
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	797

Libraries


Library Name	Type
Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

[Close]

BLAST of CX671696 vs. ExPASy Swiss-Prot
Match: CALR_RICCO (Calreticulin OS=Ricinus communis PE=2 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 4.466e-47
Identity = 65/75 (86.67%), Postives = 73/75 (97.33%), Query Frame = 1

Query:  223 QKIKNPNYKGKWKAPMIDNPDFKDDPDLYVYPNLKYVGIELWQVKSGTMFDNVLVSDDPEYANKLAEETWGKHKD 447
            +KIKNPNYKGKWKAPMIDNPDFKDDP++YVYPNLKYVGIELWQVKSGT+FDNVL+ +DPEYA +LAEETWGK+KD
Sbjct:  280 KKIKNPNYKGKWKAPMIDNPDFKDDPEIYVYPNLKYVGIELWQVKSGTLFDNVLICNDPEYAKQLAEETWGKNKD 354

HSP 2 Score: 58.151 bits (139), Expect = 4.466e-47
Identity = 28/52 (53.85%), Postives = 28/52 (53.85%), Query Frame = 2

Query:    2 KKPEGYDDIPKEIXXXXXXXXXXXXXXXXXXXXXPTIPNPEYKGPWKPKVTK 157
            KKPEGYDDIPKEI                     PTI NPEYKGPWKPK  K
Sbjct:  232 KKPEGYDDIPKEIPDPDAKKPEDWDDEEDGEWTAPTIANPEYKGPWKPKKIK 283

[Close]

BLAST of CX671696 vs. ExPASy Swiss-Prot
Match: CALR_BERST (Calreticulin OS=Berberis stolonifera PE=2 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 1.289e-46
Identity = 65/75 (86.67%), Postives = 72/75 (96.00%), Query Frame = 1

Query:  223 QKIKNPNYKGKWKAPMIDNPDFKDDPDLYVYPNLKYVGIELWQVKSGTMFDNVLVSDDPEYANKLAEETWGKHKD 447
            +KIKNPN+KGKWKAPMIDNPDFKDDPD+YV+P LKYVGIELWQVKSGTMFDNVL+ DDP+YA KLAEETWGK+KD
Sbjct:  282 KKIKNPNFKGKWKAPMIDNPDFKDDPDIYVFPKLKYVGIELWQVKSGTMFDNVLICDDPDYAKKLAEETWGKNKD 356

HSP 2 Score: 56.9954 bits (136), Expect = 1.289e-46
Identity = 27/52 (51.92%), Postives = 28/52 (53.85%), Query Frame = 2

Query:    2 KKPEGYDDIPKEIXXXXXXXXXXXXXXXXXXXXXPTIPNPEYKGPWKPKVTK 157
            KKPEGYDDIPKEI                     PTIPNP+YKG WKPK  K
Sbjct:  234 KKPEGYDDIPKEITDPEAKKPEDWDDEEDGEWTAPTIPNPDYKGEWKPKKIK 285

[Close]

BLAST of CX671696 vs. ExPASy Swiss-Prot
Match: CALR_PRUAR (Calreticulin OS=Prunus armeniaca PE=2 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 3.717e-46
Identity = 62/75 (82.67%), Postives = 73/75 (97.33%), Query Frame = 1

Query:  223 QKIKNPNYKGKWKAPMIDNPDFKDDPDLYVYPNLKYVGIELWQVKSGTMFDNVLVSDDPEYANKLAEETWGKHKD 447
            +KIKNPN+KGKWKAP+IDNP+FKDDP+LYVYPNLKYVGIELWQVKSGT+FDN+L++D+PEYA +LAEETWGK KD
Sbjct:  284 KKIKNPNFKGKWKAPLIDNPEFKDDPELYVYPNLKYVGIELWQVKSGTLFDNILITDEPEYAKQLAEETWGKQKD 358

HSP 2 Score: 58.151 bits (139), Expect = 3.717e-46
Identity = 28/52 (53.85%), Postives = 28/52 (53.85%), Query Frame = 2

Query:    2 KKPEGYDDIPKEIXXXXXXXXXXXXXXXXXXXXXPTIPNPEYKGPWKPKVTK 157
            KKPEGYDDIPKEI                     PTIPNPEYKG WKPK  K
Sbjct:  236 KKPEGYDDIPKEITDPDAKKPEDWDDEEDGEWTAPTIPNPEYKGEWKPKKIK 287

[Close]

BLAST of CX671696 vs. ExPASy Swiss-Prot
Match: CALR_NICPL (Calreticulin OS=Nicotiana plumbaginifolia GN=CAL1 PE=2 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 3.717e-46
Identity = 61/75 (81.33%), Postives = 70/75 (93.33%), Query Frame = 1

Query:  223 QKIKNPNYKGKWKAPMIDNPDFKDDPDLYVYPNLKYVGIELWQVKSGTMFDNVLVSDDPEYANKLAEETWGKHKD 447
            +KIKNPNYKGKWKAP+IDNPDFKDDPDLYV+P LKYVG+ELWQVKSGT+FDN+++ DDPEYA  +AEETWGK KD
Sbjct:  287 KKIKNPNYKGKWKAPLIDNPDFKDDPDLYVFPKLKYVGVELWQVKSGTLFDNIVICDDPEYAKAIAEETWGKQKD 361

HSP 2 Score: 59.6918 bits (143), Expect = 3.717e-46
Identity = 28/52 (53.85%), Postives = 29/52 (55.77%), Query Frame = 2

Query:    2 KKPEGYDDIPKEIXXXXXXXXXXXXXXXXXXXXXPTIPNPEYKGPWKPKVTK 157
            KKPEGYDDIP+EI                     PTIPNPEYKGPWKPK  K
Sbjct:  239 KKPEGYDDIPEEITDPDAKKPEDWDDEEDGEWTAPTIPNPEYKGPWKPKKIK 290

[Close]

BLAST of CX671696 vs. ExPASy Swiss-Prot
Match: CALR_BETVU (Calreticulin OS=Beta vulgaris PE=2 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 1.397e-45
Identity = 64/75 (85.33%), Postives = 71/75 (94.67%), Query Frame = 1

Query:  223 QKIKNPNYKGKWKAPMIDNPDFKDDPDLYVYPNLKYVGIELWQVKSGTMFDNVLVSDDPEYANKLAEETWGKHKD 447
            +KIKNPNYKGKWKAPMIDNP+FKDDP+LYVYP L+YVG+ELWQVKSGT+FDNVLV DDPEYA +LAEETWGK KD
Sbjct:  285 KKIKNPNYKGKWKAPMIDNPEFKDDPELYVYPKLRYVGVELWQVKSGTLFDNVLVCDDPEYAKQLAEETWGKQKD 359

HSP 2 Score: 55.8398 bits (133), Expect = 1.397e-45
Identity = 27/52 (51.92%), Postives = 27/52 (51.92%), Query Frame = 2

Query:    2 KKPEGYDDIPKEIXXXXXXXXXXXXXXXXXXXXXPTIPNPEYKGPWKPKVTK 157
            KKPEGYDDIP EI                     PTIPNPEYKGPWK K  K
Sbjct:  237 KKPEGYDDIPAEITDPEAKKPEDWDDEEDGEWTAPTIPNPEYKGPWKAKKIK 288

[Close]

BLAST of CX671696 vs. ExPASy Swiss-Prot
Match: CALR1_ARATH (Calreticulin-1 OS=Arabidopsis thaliana GN=CRT1 PE=1 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 6.844e-45
Identity = 65/75 (86.67%), Postives = 72/75 (96.00%), Query Frame = 1

Query:  223 QKIKNPNYKGKWKAPMIDNPDFKDDPDLYVYPNLKYVGIELWQVKSGTMFDNVLVSDDPEYANKLAEETWGKHKD 447
            +KIKNP YKGKWKAPMIDNP+FKDDP+LYV+P LKYVG+ELWQVKSG++FDNVLVSDDPEYA KLAEETWGKHKD
Sbjct:  282 KKIKNPAYKGKWKAPMIDNPEFKDDPELYVFPKLKYVGVELWQVKSGSLFDNVLVSDDPEYAKKLAEETWGKHKD 356

HSP 2 Score: 51.9878 bits (123), Expect = 6.844e-45
Identity = 25/51 (49.02%), Postives = 25/51 (49.02%), Query Frame = 2

Query:    5 KPEGYDDIPKEIXXXXXXXXXXXXXXXXXXXXXPTIPNPEYKGPWKPKVTK 157
            KP GYDDIPKEI                     PTIPNPEY G WKPK  K
Sbjct:  235 KPAGYDDIPKEIPDTDAKKPEDWDDEEDGEWTAPTIPNPEYNGEWKPKKIK 285

[Close]

BLAST of CX671696 vs. ExPASy Swiss-Prot
Match: CALR2_ARATH (Calreticulin-2 OS=Arabidopsis thaliana GN=CRT2 PE=1 SV=3)

HSP 1 Score: 140.969 bits (354), Expect = 4.733e-43
Identity = 59/75 (78.67%), Postives = 71/75 (94.67%), Query Frame = 1

Query:  223 QKIKNPNYKGKWKAPMIDNPDFKDDPDLYVYPNLKYVGIELWQVKSGTMFDNVLVSDDPEYANKLAEETWGKHKD 447
            ++IKNPNYKGKW+AP+IDNPDFKDDP+LYV+P LKYVG+ELWQVKSG++FDNVL+ DDP+YA KLA+ETWGK KD
Sbjct:  282 KQIKNPNYKGKWEAPLIDNPDFKDDPELYVFPKLKYVGLELWQVKSGSLFDNVLICDDPDYAKKLADETWGKLKD 356

HSP 2 Score: 54.6842 bits (130), Expect = 4.733e-43
Identity = 26/52 (50.00%), Postives = 27/52 (51.92%), Query Frame = 2

Query:    2 KKPEGYDDIPKEIXXXXXXXXXXXXXXXXXXXXXPTIPNPEYKGPWKPKVTK 157
            KKP+GYDDIPKEI                     PTIPNPEY G WKPK  K
Sbjct:  234 KKPDGYDDIPKEIPDTDSKKPEDWDDEEDGEWTAPTIPNPEYMGEWKPKQIK 285

[Close]

BLAST of CX671696 vs. ExPASy Swiss-Prot
Match: CALR_ORYSJ (Calreticulin OS=Oryza sativa subsp. japonica GN=Os07g0246200 PE=1 SV=2)

HSP 1 Score: 137.117 bits (344), Expect = 6.168e-43
Identity = 58/75 (77.33%), Postives = 67/75 (89.33%), Query Frame = 1

Query:  223 QKIKNPNYKGKWKAPMIDNPDFKDDPDLYVYPNLKYVGIELWQVKSGTMFDNVLVSDDPEYANKLAEETWGKHKD 447
            +KIKNPNY+GKWKAPMIDNPDFKDDP +Y + +LKY+GIELWQVKSGT+FDN L++DDPE A   AEETWGKHKD
Sbjct:  289 KKIKNPNYQGKWKAPMIDNPDFKDDPYIYAFDSLKYIGIELWQVKSGTLFDNFLITDDPELAKTFAEETWGKHKD 363

HSP 2 Score: 58.151 bits (139), Expect = 6.168e-43
Identity = 28/52 (53.85%), Postives = 28/52 (53.85%), Query Frame = 2

Query:    2 KKPEGYDDIPKEIXXXXXXXXXXXXXXXXXXXXXPTIPNPEYKGPWKPKVTK 157
            KKPEGYDDIPKEI                     PTIPNPEYKGPWK K  K
Sbjct:  241 KKPEGYDDIPKEIPDPDAKKPEDWDDEEDGEWTAPTIPNPEYKGPWKQKKIK 292

[Close]

BLAST of CX671696 vs. ExPASy Swiss-Prot
Match: CALR_MAIZE (Calreticulin OS=Zea mays GN=CRT PE=2 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 5.127e-42
Identity = 55/75 (73.33%), Postives = 67/75 (89.33%), Query Frame = 1

Query:  223 QKIKNPNYKGKWKAPMIDNPDFKDDPDLYVYPNLKYVGIELWQVKSGTMFDNVLVSDDPEYANKLAEETWGKHKD 447
            +KIKNPNY+GKWKAPMIDNPDFKDDP +Y + +LKY+GIELWQVKSGT+FDN++++DDP  A   AEETWGKHK+
Sbjct:  285 KKIKNPNYQGKWKAPMIDNPDFKDDPYIYAFDSLKYIGIELWQVKSGTLFDNIIITDDPALAKTFAEETWGKHKE 359

HSP 2 Score: 58.151 bits (139), Expect = 5.127e-42
Identity = 28/52 (53.85%), Postives = 28/52 (53.85%), Query Frame = 2

Query:    2 KKPEGYDDIPKEIXXXXXXXXXXXXXXXXXXXXXPTIPNPEYKGPWKPKVTK 157
            KKPEGYDDIPKEI                     PTIPNPEYKGPWK K  K
Sbjct:  237 KKPEGYDDIPKEIPDPDAKKPEDWDDEEDGEWTAPTIPNPEYKGPWKQKKIK 288

[Close]

BLAST of CX671696 vs. ExPASy Swiss-Prot
Match: CALR3_ARATH (Calreticulin-3 OS=Arabidopsis thaliana GN=CRT3 PE=2 SV=2)

HSP 1 Score: 113.62 bits (283), Expect = 1.880e-31
Identity = 44/75 (58.67%), Postives = 63/75 (84.00%), Query Frame = 1

Query:  223 QKIKNPNYKGKWKAPMIDNPDFKDDPDLYVYPNLKYVGIELWQVKSGTMFDNVLVSDDPEYANKLAEETWGKHKD 447
            ++IKNPNYKGKWK P IDNP+F+DDPDLYV  ++KY GIE+WQVK+G++FDN+L+ DDP YA  + ++ + +H++
Sbjct:  288 KRIKNPNYKGKWKNPWIDNPEFEDDPDLYVLKSIKYAGIEVWQVKAGSIFDNILICDDPAYARSIVDDYFAQHRE 362

HSP 2 Score: 43.1282 bits (100), Expect = 1.880e-31
Identity = 21/51 (41.18%), Postives = 23/51 (45.10%), Query Frame = 2

Query:    5 KPEGYDDIPKEIXXXXXXXXXXXXXXXXXXXXXPTIPNPEYKGPWKPKVTK 157
            KPEG+D IP+EI                     P IPN  YKGPWK K  K
Sbjct:  241 KPEGFDSIPREIPDRKAKEPEDWDEEENGLWEPPKIPNSAYKGPWKAKRIK 291

The following BLAST results are available for this feature:

BLAST of CX671696 vs. ExPASy Swiss-Prot

BLAST of CX671696 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 34


Match Name	E-value	Identity	Description
CALR_RICCO	4.466e-47	86.67	Calreticulin OS=Ricinus communis PE=2 SV=1	[more]
CALR_BERST	1.289e-46	86.67	Calreticulin OS=Berberis stolonifera PE=2 SV=1	[more]
CALR_PRUAR	3.717e-46	82.67	Calreticulin OS=Prunus armeniaca PE=2 SV=1	[more]
CALR_NICPL	3.717e-46	81.33	Calreticulin OS=Nicotiana plumbaginifolia GN=CAL1 ...	[more]
CALR_BETVU	1.397e-45	85.33	Calreticulin OS=Beta vulgaris PE=2 SV=1	[more]
CALR1_ARATH	6.844e-45	86.67	Calreticulin-1 OS=Arabidopsis thaliana GN=CRT1 PE=...	[more]
CALR2_ARATH	4.733e-43	78.67	Calreticulin-2 OS=Arabidopsis thaliana GN=CRT2 PE=...	[more]
CALR_ORYSJ	6.168e-43	77.33	Calreticulin OS=Oryza sativa subsp. japonica GN=Os...	[more]
CALR_MAIZE	5.127e-42	73.33	Calreticulin OS=Zea mays GN=CRT PE=2 SV=1	[more]
CALR3_ARATH	1.880e-31	58.67	Calreticulin-3 OS=Arabidopsis thaliana GN=CRT3 PE=...	[more]

Pages

Properties


Property Name	Value
Genbank description	UCRCS10_12F03_g Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-12F03-L6-5.g, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CX671696 ID=CX671696; Name=CX671696; organism=Citrus sinensis; type=EST; length=797bp
CAAGAAGCCAGAGGGCTATGATGACATTCCAAAGGAGATAACAGATCCTG
ATGCCAAGAAGCCTGATGATTGGGATGATGAGGAAGATGGTGAATGGACA
GCTCCAACCATCCCTAACCCAGAGTACAAGGGTCCATGGAAGCCAAAGGT
TACTAAAATTCTAGATTAATTTGAACCATGTAAATATGGTTTTGGCTATC
TTGTAACTGTGTTTTGCCTCTGCAGAAAATTAAGAACCCTAATTACAAGG
GCAAGTGGAAGGCTCCAATGATTGACAACCCAGATTTCAAGGATGACCCA
GACCTTTATGTGTATCCCAACTTGAAGTATGTTGGCATTGAGTTGTGGCA
GGTGAAATCTGGAACCATGTTTGACAATGTCTTGGTTAGTGATGATCCAG
AGTATGCCAATAAGTTGGCCGAAGAAACATGGGGAAAGCATAAGGATGTA
TGATTGTTTTCTCCTCATCAAATCTGTCTCATAACTGATACTTACAAGCC
TCAGTATTTGATTTGGAGACCTATTGTTTTTGCAGGCCGAGAAGGCAGCA
TTTGATGAGGCCGAGAAGAAGAGAGAGGAGGAGGTGCTTTTTTGCTCAAT
TACTTTGTTGCACATTTTATTTTTTCTTTGGAATTGGGTTTTTAGCATAC
TTAGCTGAGTTTCCAAAGACATAATCATTTACCTAGATGAAAACTTATCT
GTTGAAAACTTTTTTGATTCTATTCTGTGTTACCAGTTATGCTAACTTTC
TGAAATGTGGTTAACAGGAATCAAAGGACGCACCTGATTCTGATGCT